Marine Biology Commons^™

Advocacy For Marine Management: Contributions To A Policy Advocacy Initiative In The Maldives, Neal Collins

Capstone Collection

On June 5, 2009 a 42-­‐km2 area of coral reef situated in the Alif Dhaalu (South Ari) atoll of the Republic of Maldives was designated the South Ari Atoll Marine Protected Area (S.A. MPA) due to a globally significant whale shark aggregation site. The whale shark is notorious for its gargantuan size and docile nature, which has led to a burgeoning tourist industry that gives people the opportunity to swim with the gentle giants in tropical sites such as the Maldives. The S.A. MPA receives tens of thousands of visitors a year that engage in whale shark excursions, however, there …

De Novo Transcriptome Analysis Of The Marine Sponge Cinachyrella Spp: A Potential Model Organism For Oil And Dispersant Ecotoxicology, Emily Smith

HCNSO Student Theses and Dissertations

In order to study the potential effects of an oil spill on coral reef organisms, the marine sponge, Cinachyrella spp. was investigated. In this study, Cinachyrella spp. was placed in a closed aquaculture system and exposed to sub-lethal water-accommodated fractions (WAFs) of Macondo crude oil and chemically-enhanced water accommodated fractions (CE-WAFs) of the dispersant, Corexit 9500, over a 24-hour time course, in order to model the BP Deepwater Horizon oil spill and oil spill sponge response. Illumina RNA sequencing and gene expression analysis utilizing hierarchical clustering, principal component analysis, and KEGG bioinformatic database generated 34,147 unique transcripts with …

Evaluation Of Human Fecal Pollution In Mississippi Coastal And Creek Waters Using Library Independent Markers, Christopher John Flood

Dissertations

The objective of this study was to determine whether statistically valid correlations could be elucidated between standard indicator bacteria (enterococci and fecal coliforms) from coastal creek and marine samples and the presence of four library independent molecular markers that are human or sewage specific. Eight hundred and nineteen samples were collected between August 2007 and July 2010 to determine enterococcal and fecal coliform counts and the presence of genetic markers for sewage indicator organisms Methanobrevibacter smithii, human specific Bacteroides sp., Bacteroides thetaiotaomicron, and Fecalibacterium sp. During the course of this study environmental parameters were measured and statistically analyzed to determine …

Springtime Contribution Of Dinitrogen Fixation To Primary Production Across The Mediterranean Sea, E. Rahav, B. Herut, A. Levi, Margaret Mulholland, I. Berman-Frank

OES Faculty Publications

Dinitrogen (N-2) fixation rates were measured during early spring across the different provinces of Mediterranean Sea surface waters. N-2 fixation rates, measured using N-15(2) enriched seawater, were lowest in the eastern basin and increased westward with a maximum at the Strait of Gibraltar (0.10 to 2.35 nmol NL-1 d(-1), respectively). These rates were 3-7 fold higher than N-2 fixation rates measured previously in the Mediterranean Sea during summertime and we estimated that methodological differences alone did not account for the seasonal changes we observed. Higher contribution of N-2 fixation to primary production (4-8 %) was measured in the western basin …

Aerobic Degradation Of Α-, Β-, Γ-Hexachlorocyclohexane By Narragansett Bay Bacterioplankton, Ian M. Rambo

Senior Honors Projects

Hexachlorocyclohexanes (HCHs) are a family of chlorinated organic compounds that were previously used as agricultural insecticides. HCHs are recognized as persistent organic pollutants due to their toxicity, recalcitrant properties, and tendency to bioaccumulate in food webs. Although HCH was first synthesized in 1825, its use was not widespread until the discovery of the insecticidal activity of the γ-HCH isomer in 1942. γ-HCH and its toxic waste isomers α-HCH and β-HCH were banned from production and use by the United Nations in 2009, yet these chemicals still present environmental problems due to their persistence in soils and surface waters. HCHs continue …

The Utility Of Planning And Other Spatial Concepts In The Marine Spatial Management Of Marine Protected Areas (Mpas), Marine Reserves, Marine Zoning, Marine Sanctuaries And Parks, Marine Spatial Planning (Msp), Large Marine Ecosystems (Lmes) And Seascape / Marine Design., Samuel Martin, Brandyn Lucca, Dr. William R. Gordon Jr.

Senior Honors Projects

In the last fifty years, man has demonstrated an increased interest in gaining access to and apportioning the near and offshore marine environment. Governments, coastal and marine managers, economic-based users, stakeholders, and academics have gained an interest and involvement in the demarcation of marine boundaries. Many land-based spatial applications, utilized from disciplines such as planning, geography, landscape architecture and regional science have been applied to the spatial acquisition and management of ocean resources. In the last four decades new marine applications have emerged, they include: 1) Marine Protected Areas (MPAs), 2) Marine Reserves, 3) Marine Zoning, 4) Marine Sanctuaries, and …

Integrated Modeling Of Hydrodyanmics And Marsh Evolution Under Sea Level Rise In Apalachicola, Fl, Karim Alizad, Matthew V. Bilskie, Davina Passeri

Faculty Publications

The northern Gulf of Mexico is home to a vast amount of coastal ecosystems that provide natural and economic resources. Rising sea levels may threaten these resources with increased flood magnitude and frequency, accelerated erosion, loss of wetlands, and saltwater intrusion. The Ecological Effects of Sea Level Rise in Northern Gulf Of Mexico (EESLR-NGOM), a five year interdisciplinary effort funded by the National Oceanic and Atmospheric Administration (NOAA), aims to assess these effects and provide local coastal managers with the knowledge and tools to prepare for the dynamic impacts of tides and storm surge magnified by sea level rise (SLR). …

Accessing Learning In The Adult Zebrafish With A Novel Associative Learning Task, David Joseph Jouandot Ii

Dissertations

The zebrafish (Danio rerio) is accepted in the developmental and genomic communities as a model organism. However, the capacity for the zebrafish as a behavioral model has yet to be fully acknowledged. The research presented provides evidence validating the novel task, aids in gaining a better understanding of the learning processes, and identifies individual differences. The novel associative learning task differs from any present well established behavioral model and lends itself to future development. The task provides the zebrafish community with a high output behavioral task which is readily replicated and allows one researcher to test between eight …

Tactile Behavior In A Group Of Captive Rough-Toothed Dolphins As A Function Of Opportunities To Play With Objects, Kelly Ann Caffery

Dissertations

Cetaceans live in complex physical and social environments that are frequently changing. In contrast, the captive environment for marine mammals is often lacking in stimulation. As a result, enrichment is often used to increase species-typical behaviors and enhance the well-being of the animals. The purpose of this study was to compare the effects of enrichment objects on the social behavior of a group of seven captive rough-toothed dolphins (Steno bredanensis). Observations of this species in the wild suggest it may have a particular affinity for tactile and object play behaviors. Therefore, these behavior categories were a primary focus …

Phytoplankton Community Distribution And Light Absorption Properties In The Northern Gulf Of Mexico, Sumit Chakraborty

Dissertations

The theme of this dissertation was to understand the spatio-temporal dynamics of the phytoplankton community, its light absorption properties, and its relationship to underlying physicochemical processes. Understanding these phenomena will benefit efforts to predict pathways of carbon transformation in the ocean, to estimate primary productivity (PP) and to characterize distributions of phytoplankton communities using ocean color remote sensing.

This research entailed four different studies, which address different objectives. The first two studies dealt with phytoplankton community composition and its relationship to environmental variables. A chemotaxonomic approach was used, which was successful in revealing distinct phytoplankton assemblages in distinct water mass …

Distribution, Prevalence, And Genetic Analysis Of Panulirus Argus Virus 1 (Pav1) From The Caribbean Sea, Jessica Moss, Donald C. Behringer Jr., Jeffrey D. Shields, Antonio Baeza, Alfonso Aguilar-Perera, Phillippe G. Bush, Clement Dromer, Alejandro Herrera-Moreno, Lester Gittens, Thomas R. Matthews, Michael R. Mccord, Michelle T. Schärer, Lionel Reynal, Nathanial Truelove, Mark J. Butler Iv

Biological Sciences Faculty Publications

The pathogenic virus Panulirus argus virus 1 (PaV1) was first discovered in Caribbean spiny lobsters Panulirus argus from the Florida Keys (USA) in 1999 and has since been reported in Belize, Mexico, and Cuba; its distribution in the wider Caribbean is unknown. We collected tissue samples from adult spiny lobsters from 30 locations in 14 countries bordering the Caribbean Sea and used molecular diagnostics to assay for the presence of PaV1. PaV1 occurred primarily in the northern areas of the Caribbean, where its prevalence was highest. The virus was not found in lobsters from the southeastern Caribbean, and its prevalence …

Edges And Overlaps In Northwest Atlantic Phylogeography, Safra Altman, John D. Robinson, James M. Pringle, James E. Byers, John P. Wares

Publications and Research

As marine environments change, the greatest ecological shifts—including resource usage and species interactions—are likely to take place in or near regions of biogeographic and phylogeographic transition. However, our understanding of where these transitional regions exist depends on the defining criteria. Here we evaluate phylogeographic transitions using a bootstrapping procedure that allows us to focus on either the strongest genetic transitions between a pair of contiguous populations, versus evaluation of transitions inclusive of the entire overlap between two intraspecific genetic lineages. We compiled data for the Atlantic coast of the United States, and evaluate taxa with short- and long-dispersing larval phases …

For The Birds, Milan Bull

Wrack Lines

A new column about shore birds, starting with piping plovers.

Marine Turtle Health Assessment And Aquarium Suitability: Uzi Island, Zanzibar, Olivia “Warda” Crane

Independent Study Project (ISP) Collection

This study assessed the health of the marine turtles in the aquarium on Uzi Island. Health evaluations of each turtle included size, eating habit, and physical abnormalities. Behaviorally the sea turtles were observed at two different time periods multiple times. Results were compared to research on wild sea turtles. The conditions of the aquarium were evaluated for water quality and holding capacity. The water temperature, pH, and salinity levels were tested to assess the water quality. The results showed that the overall health of the sea turtles were positive from the normal activities and few abnormalities. The overall aquarium conditions …

Bioremediation Mariculture In Zanzibar, Tanzania: A Viability Assessment Of Using Bath Sponge And Pearl Oyster Farms To Filter Highly Olluted Waters In The Zanzibar Channel, Hayley Oakland

Independent Study Project (ISP) Collection

Bioremediation of polluted water off the coastline of the urban center of Zanzibar—Stone Town, Unguja—was assessed for implementation feasibility through bath sponge and pearl oyster mariculture. A vast research base of the city’s coastal area exists, including the pollution concentrations at various locations, the ramifications of this pollution on the fringing ecosystems, and the relevant water circulation system of eddies and passageways produced by the north flowing East African Counter Current. In following the experimental examples of bioremediation projects around the world, this study tested facets of the filtration abilities of marine sponges and oysters. Both organisms suggested strong pollution …

There's A New Crop In Town, Margaret (Peg) A. Van_Patten Ms.

Wrack Lines

This food is being grown and sold in Connecticut for the first time--maybe it's not what you think!

Partners In Spread Prevention, Nancy C. Balcom

Wrack Lines

Working together to stop the spread of aquatic invasive species.

Microhabitat Selection By Marine Mesoconsumers In A Thermally Heterogeneous Habitat: Behavioral Thermoregulation Or Avoiding Predation Risk?, Jeremy Vaudo, Michael Heithaus

Marine & Environmental Sciences Faculty Articles

Habitat selection decisions by consumers has the potential to shape ecosystems. Understanding the factors that influence habitat selection is therefore critical to understanding ecosystem function. This is especially true of mesoconsumers because they provide the link between upper and lower tropic levels. We examined the factors influencing microhabitat selection of marine mesoconsumers – juvenile giant shovelnose rays (Glaucostegus typus), reticulate whiprays (Himantura uarnak), and pink whiprays (H. fai) – in a coastal ecosystem with intact predator and prey populations and marked spatial and temporal thermal heterogeneity. Using a combination of belt transects and data …

Florida Keys Population Abundance Estimates For Nine Coral Species Proposed For Listing Under The U.S. Endangered Species Act, Steven Miller, William F. Precht, Leanne M. Rutten, Mark Chiappone

Marine & Environmental Sciences Faculty Reports

This report presents abundance and size-class distribution estimates for nine coral species in the Florida Keys and Dry Tortugas, all of which are proposed for listing or reclassification under the U.S. Endangered Species Act (ESA). The lack of population data for these species was highlighted as a deficiency in the ESA Review Process by the Biological Review Team (BRT) in their Status Review (Brainard et al. 2011) and also by the National Oceanic and Atmospheric Administration (NOAA) (Federal Register 2012). Field sampling protocols were adapted from Aronson et al. (1994) and the Atlantic and Gulf Rapid Reef Assessment program (Kramer …

Coral Population Trajectories, Increased Disturbance And Management Intervention: A Sensitivity Analysis, Bernhard Riegl, M. L. Berumen, Andrew Bruckner

Marine & Environmental Sciences Faculty Articles

Coral reefs distant from human population were sampled in the Red Sea and one-third showed degradation by predator outbreaks (crown-of-thorns-starfish = COTS observed in all regions in all years) or bleaching (1998, 2010). Models were built to assess future trajectories. They assumed variable coral types (slow/fast growing), disturbance frequencies (5,10,20 years), mortality (equal or not), and connectivity (un/connected to un/disturbed community). Known disturbances were used to parameterize models. Present and future disturbances were estimated from remote-sensing chlorophyll and temperature data. Simulations and sensitivity analysis suggest community resilience at >20-year disturbance frequency, but degradation at higher frequency. Trajectories move from fast-grower …