Marine Biology Commons^™

Shellfish Tissue Monitoring In Piscataqua Region Estuaries 2013, Matthew A. Wood, Philip R. Trowbridge

PREP Reports & Publications

Originally conducted by the Gulf of Maine Council on the Marine Environment from 1993 to 2011, the Gulfwatch Program examined trends in the water quality of the Gulf of Maine by monitoring toxic contaminant concentrations in the tissues of shellfish. Starting in 2012 the Piscataqua Region Estuaries Partnership (PREP) continued this program in the Piscataqua Region. Each year, PREP collects blue mussels at three sites: Dover Point, NH (NHDP), Clark Cove on Seavey Island, ME (MECC), and Hampton-Seabrook Harbor (NHHS). The mussel tissue is analyzed to determine the concentrations of toxic contaminantss including heavy metals, chlorinated pesticides, polychlorinated biphenyls (PCBs), …

Assessing The Responses Of Adult, Juvenile, And Larval Fish Assemblages To The Closure Of The Mississippi River Gulf Outlet, An Artificial Tidal Pass In Southeastern Louisiana, Rebecca Weatherall Cope

LSU New Orleans Theses and Dissertations

The creation of the Mississippi River Gulf Outlet (MRGO) in 1963 by the U.S. Army Corps of Engineers (USACE) represents one of the most catastrophic, anthropogenic stressors ever to impact the Lake Pontchartrain estuary in southeastern Louisiana, USA. The artificial tidal pass provided a direct route from the Gulf of Mexico to New Orleans. It allowed for high saline waters to enter Lake Pontchartrain, resulting in detrimental changes to the biotic community of the Lake and surrounding wetland areas. In July 2009, the USACE closed the MRGO in hopes of restoring natural ecosystems. This study assesses changes in the adult, …

Robinson Point, Belize: An Important Foraging Ground For Endangered Sea Turtles In The Western Caribbean Sea, Linda Searle

HCNSO Student Theses and Dissertations

Anecdotal reports, flipper tag returns, satellite migration paths, and above-water and net surveys have identified an important foraging area for sea turtles in the Robinson Point area, 12 kilometers southwest of Belize City. Visual observations confirmed that sea turtles were actively foraging at Robinson Point. Sixteen 30 minute visual observations from stationary and drifting boats made 132 sea turtle sightings from October 2007 through January 2008, with a maximum of 40 sightings made in one survey. In-water capture methodology tested the traditional turtle net, which captured 14 turtles in 63 sets for a success rate of only 22%. There were …

Development And Application Of A Gis-Based Long Island Sound Eelgrass Habitat Suitability Index Model, Jamie M.P. Vaudrey, Justin Eddings, Christopher Pickerell, Lorne Brousseau, Charles Yarish

Department of Marine Sciences

The primary objectives of the Eelgrass Habitat Suitability Index Model (EHSI Model) are to assist in the evaluation of sites being considered for eelgrass restoration efforts in the Long Island Sound (LIS) area and to identify areas where water quality issues reduce or eliminate the potential for natural eelgrass colonization. To achieve this goal, geospatial processing of data available from the Long Island Sound area was conducted using ArcGIS v10.0 including the 3D Analyst and Spatial Analyst extensions. The result is a series of maps presented in this report and a GIS-based model available for users to interact with the …

Species Composition And Reproductive Strategies Of Commensal Synalpheus Shrimp (Decapoda:Alpheidae) Occupying The Sponges Spheciospongia Vesparium And Spongia Sp. Of The Florida Reef Tract, Brittnee Nicole Barris

HCNSO Student Theses and Dissertations

Synalpheus shrimp species of the gambarelloides group are the only marine organisms displaying the highest level of social functioning, eusociality. Their social hierarchies are equally complex compared to the reproductive abnormalities that have been recently discovered. For instance, snapping shrimp of the genus Synalpheus were thought to be gonochoric, i.e. developing as independent sexes, until scanning electron microscopy studies revealed intersexed gonopores in several species. This project analyzed both the species composition, and accompanying reproductive structures, of Synalpheus spp. (Caridea: Alpheidae) comprised of densely aggregating communal and pair-living colonies in the Florida Keys, Florida.

Colonies of pair-living and communal Synalpheus …

Educating The Masses: Human Attitudes Affecting Reef Health, Ashley Wiehl

HCNSO Student Theses and Dissertations

About two thirds of the world’s population lives within 60 km of a coastline, however many members of the public do not recognize the importance of the nearby coral reef ecosystems. Although reef degradation is currently occurring at alarming rates, there is hope for the future of coral reef health. It is proven that humans have a large effect on the current health of coral reefs. This thesis aims to determine how marine scientists and educators can best influence the general public to affect behaviors to improve reef health. To do this involves taking analyzing the many effects of human …

East Coast Salt Marsh Response To Sea Level Rise: Microbial Community Function And Structure, Matt R. Simon

All Theses And Dissertations

Coastal salt marshes are under stress from anthropogenic climate change-induced sea level rise (SLR). Sediment microbial decomposition is a major driver of marsh subsidence and any impact of SLR on this biotic process would have a direct effect on marsh surface elevation relative to sea level. Furthermore, sensitivity to SLR of microbial community composition may play a role in the functional response. I collected sediment from six coastal marshes on the United States Atlantic East coast, exposed it to simulated sea level rise and measured total respired carbon over a three week period. My results indicated that SLR caused a …

Quantifying Uncertainty And Resilience On Coral Reefs Using A Bayesian Approach, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Coral reefs are rapidly deteriorating globally. The contemporary management option favors managing for resilience to provide reefs with the capacity to tolerate human-induced disturbances. Yet resilience is most commonly defined as the capacity of a system to absorb disturbances without changing fundamental processes or functionality. Quantifying no change, or the uncertainty of a null hypothesis, is nonsensical using frequentist statistics, but is achievable using a Bayesian approach. This study outlines a practical Bayesian framework that quantifies the resilience of coral reefs using two inter-related models. The first model examines the functionality of coral reefs in the context of their reef-building …

Assessing Respiration Rates And Nutrient Dynamics Of Aritifical Reef Biofilms And Bacterioplankton In The Mississippi Sound, Lynn Elizabeth Wilking

Master's Theses

Artificial reefs are primarily used to provide a suitable habitat for target fish populations, but the structures can also improve water quality and benefit non-target organisms. Laboratory incubation experiments were conducted in the presence of biofilm on rubble and in its absence to examine bacterial growth, community respiration, and nutrient dynamics at four artificial reef habitats in the Mississippi Sound. Biofilm samples were also collected from settlement plates deployed at each site and were analyzed for 813C and 81sN stable isotope content. Respiration rates were always higher in the presence of biofilm but bacterial abundance often declined over time, and …

Age, Growth, Mortality, And The Effects Of Trawling On Mortality Of The Longspine Porgy, Stenotomus Caprinus, Cher Marie Newman

Master's Theses

Stenotomus caprinus (Longspine Porgy) is one of the most abundant bycatch species caught in trawl fisheries in the northern Gulf of Mexico (GOM). Biological data of length, weight, and abundance have been collected since 1972 on the Southeast Area Monitoring and Assessment Program (SEAMAP) surveys with a variety of GOM species, including Longspine Porgy, using trawl nets during groundfish surveys. In 2010-2011 five Longspine Porgy were obtained from Groundfish and Pelagic surveys at each station for further analysis. Age distribution was determined through von Bertalanffy length and weight-age models. The samples were separated into two regions of the GOM to …

Determining The Extent And Characterizing Coral Reef Habitats Of The Northern Latitudes Of The Florida Reef Tract (Martin County), Brian K. Walker, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Climate change has recently been implicated in poleward shifts of many tropical species including corals; thus attention focused on higher-latitude coral communities is warranted to investigate possible range expansions and ecosystem shifts due to global warming. As the northern extension of the Florida Reef Tract (FRT), the third-largest barrier reef ecosystem in the world, southeast Florida (25–27° N latitude) is a prime region to study such effects. Most of the shallow-water FRT benthic habitats have been mapped, however minimal data and limited knowledge exist about the coral reef communities of its northernmost reaches off Martin County. First benthic habitat mapping …

Characterization Of Shark Movements On A Mesophotic Caribbean Coral Reef And Temporal Association With Fish Spawning Aggregations, Alexandra E. Pickard

HCNSO Student Theses and Dissertations

Habitat use of mesophotic coral reefs by sharks is largely unknown. However, it is well established that mesophotic reefs are the site of spawning aggregations for many species of teleost fish. These aggregations represent seasonal concentrations of potential prey biomass that may influence the habitat use of predatory species such as large sharks. I employed acoustic monitoring to examine the movements of three shark species [lemon shark (Negaprion brevirostris), tiger shark (Galeocerdo cuvier), and Caribbean reef shark (Carcharhinus perezi)] to determine 1) the comparative spatiotemporal patterns of mesophotic reef habitat use by the three …

Tracking Transmission Of Apicomplexan Symbionts In Diverse Caribbean Corals, Nathan L. Kirk, Raphael Ritson-Williams, Mary Alice Coffroth, Margaret W. Miller, Nicole D. Fogarty, Scott R. Santos

Marine & Environmental Sciences Faculty Articles

Symbionts in each generation are transmitted to new host individuals either vertically (parent to offspring), horizontally (from exogenous sources), or a combination of both. Scleractinian corals make an excellent study system for understanding patterns of symbiont transmission since they harbor diverse symbionts and possess distinct reproductive modes of either internal brooding or external broadcast spawning that generally correlate with vertical or horizontal transmission, respectively. Here, we focused on the under-recognized, but apparently widespread, coral-associated apicomplexans (Protista: Alveolata) to determine if symbiont transmission depends on host reproductive mode. Specifically, a PCR-based assay was utilized towards identifying whether planula larvae and reproductive …

A Comparison Of Site Fidelity And Habitat Use Of Red Snapper (Lutjanus Campechanus) To Evaluate The Performance Of Two Artificial Reefs In South Texas Utilizing Acoustic Telemetry, Andres Garcia

Theses and Dissertations - UTB/UTPA

Evaluation of artificial reefs is becoming an increasingly important component of fisheries management. This is particularly true for the northwestern Gulf of Mexico where natural hard substrate is limited and 359 petroleum platforms are scheduled for removal in 2013 due to the “idle iron” policy. This study compared the performance of two artificial reef configurations off the south Texas coast, the Texas Clipper and South Padre Island Near Shore Reefs that differ in material, depth, and distance from shore, with respect to behavior of red snapper, Lutjanus campechanus, an important recreational and commercial species. Red snapper were implanted with depth …

The Effects Of A Red Tide, Karenia Brevis Episode On The Benthic Macroinvertebrate Communities Of South Padre Island, Texas, Liana Lerma

Theses and Dissertations - UTB/UTPA

South Padre Island, Texas has experienced increasing frequency of harmful algal blooms (Karenia brevis) since the 1900’s, many of which resulted in massive fishes kills. In addition, shorebirds and other terrestrial wildlife deaths have been linked to K. brevis blooms prompting investigations of potential pathways by which brevetoxins may be transmitted to higher trophic levels. The benthic macrofanual community inhabiting the swash zone of sandy beaches consists primarily of filter feeding invertebrates which may serve as toxin bioaccumulators to secondary consumers of both marine and terrestrial food webs. The first reported mass mortality of swash zone benthic macrofauna on the …

The Rootscope: A Simple High-Throughput Screening System For Quantitating Gene Expression Dynamics In Plant Roots, Erin J. Kast , '15, Minh-Duyen T. Nguyen , '13, Rosalie E. Lawrence , '12, Christina Rabeler, Nicholas J. Kaplinsky

Biology Faculty Works

Background: High temperature stress responses are vital for plant survival. The mechanisms that plants use to sense high temperatures are only partially understood and involve multiple sensing and signaling pathways. Here we describe the development of the RootScope, an automated microscopy system for quantitating heat shock responses in plant roots.Results: The promoter of Hsp17.6 was used to build a Hsp17.6(p):GFP transcriptional reporter that is induced by heat shock in Arabidopsis. An automated fluorescence microscopy system which enables multiple roots to be imaged in rapid succession was used to quantitate Hsp17.6p: GFP response dynamics. Hsp17.6(p):GFP signal increased with temperature increases from …

Growth Of Tropical Dasyatid Rays Estimated Using A Multi-Analytical Approach, Owen R. O'Shea, Matias Braccini, Rory Mcauley, Conrad W. Speed, Mark G. Meekan

Fisheries Research Articles

We studied the age and growth of four sympatric stingrays: reticulate whipray, Himanutra uarnak (n=19); blue mask, Neotrygon kuhlii (n=34); cowtail, Pastinachus atrus (n=32) and blue-spotted fantail, Taeniura lymma (n=40) rays at Ningaloo Reef, a fringing coral reef on the north-western coast of western Australia. Age estimates derived from band counts within sectioned vertebrae ranged between 1 and 27 years (H. uarnak, 1 - 25 yrs.; N. kuhlii, 1.5 - 13 yrs.; P. atrus, 1 - 27 yrs. and T. lymma, 1 -11 yrs.). Due to limitations of sample sizes, we combined several analytical methods …

Accuracy Assessment Of Noaa's Florida Keys Benthic Habitat Map, Brian K. Walker, Ian Rodericks, Amanda Costaregni

Marine & Environmental Sciences Faculty Reports

This report describes the methodologies, analyses, and results for an independent accuracy assessment of a thematic benthic habitat map produced by NOAA for the Florida Keys. It is an analysis of four regional accuracy assessments. Over the course of the Florida Keys mapping project, NOAA amended part of the classification scheme. The original scheme for mapping benthic cover was a tiered approach where certain benthic cover categories were given priority over others (e.g. coral was most important). Recently, this was modified to a dominant benthic cover scheme where the habitat is characterized by the single most dominant cover type and …

Internet Reviews: Smithsonian Ocean Portal, John Creech

Library Scholarship

This column comprises a review of the Smithsonian Ocean Portal, an Internet resource created by Smithsonian Institution's Museum of Natural History.

Distribution Extension Of Escherbothrium Molinae Berman And Brooks, 1994 (Cestoda: Tetraphyllidea: Triloculariidae) In Urotrygon Sp. From The Pacific Coast Of Mexico, Francisco Zaragoza-Tapia, Scott Monks, Griselda Pulido-Flores, Juan Violante-González

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Cestodes collected from the spiral valves of the stingray Urotrygon sp. from the Pacific coast of Mexico were identified as Escherbothrium molinae Berman and Brooks, 1994. The first report of the species was from the Gulf of Nicoya and the Guanacaste coast, Costa Rica; this work represents the second report of the species since the original description and extends its distribution north to Acapulco, Guerrero, Mexico.