Marine Biology Commons^™

Evaluating Oyster Aquaculture’S Cost-Effectiveness As A Nitrogen Removal Best Management Practice – A Case Study Of The Delaware Inland Bays, Jefferson F. Flood

Journal of Ocean and Coastal Economics

Disease and overfishing have led to a dramatic decline in wild populations and subsequent harvests of the eastern oyster Crassostrea virginica over the past few decades in Delaware and other states along the Atlantic Coast. However, in addition to their value as food to consumers, oysters, whether wild populations or cultured stocks, can provide ecosystem services such as nutrient removal, which may result in localized water quality improvements. Consequently, recent policies in Delaware have sought to establish and grow an oyster aquaculture industry. However, a key challenge to achieving efficient levels of industry growth and water quality improvements is that …

Oxidative Stress, Genotoxicity, And Immune Response Biomarkers Measured In Red Snapper (Lutjanus Campechanus) Collected Aboard Multiple R/V Weatherbird Ii Cruises In The Gulf Of Mexico From 2015-08-20 To 2017-07-30, Steven A. Murawski, Kristina Deak, Larry Dishaw

C-IMAGE data

This dataset contains oxidative stress, genotoxicity and immune response biomarkers measured in red snappers collected aboard the R/V Weatherbird II cruises WB-1602, WB-1603, WB-1701 and WB-1736 in the Gulf of Mexico from 2015-08-20 to 2017-07-30. The dataset contains the location, date and depth of sample collection. In addition it includes the fish species, fish biometric data (such as weight, sex, liver weight, gonad weight, fork and total length) and concentrations or percentages of biomarkers that indicate oxidative stress (plasma superoxide dismutase, plasma sorbitol dehydrogenase, plasma malondialdehyde), immune response (hematocrit and leukocrit percentages, differential white blood cell counts in whole blood, …

Changes In The Spatial Distribution And Anatomy Of A Range Shift For The Atlantic Surfclam Spisula Solidissima In The Mid-Atlantic Bight And On Georges Bank, Jeremy R. Timbs, Eric N. Powell, Roger Mann

Faculty Publications

The Atlantic surfclam Spisula solidissima supports one of the largest fisheries on the US northeast coast. Using ~30 yr of data from surfclam stock surveys, variance-to-mean ratios (VtMRs) were calculated both temporally and spatially for a range of surfclam size classes to determine the degree of patchiness. The VtMR declined from the 1980s to present in all regions (offshore Delmarva, New Jersey, Long Island, Southern New England, Georges Bank); however, VtMR rose with increasing clam size. Taylor’s power law (TPL) analysis corroborated the VtMR; the surfclam is highly patchy across its range. The surfclam’s proclivity for a patchy distribution varied …

Supplemental Fos Article Materials, Sarah Gumbleton, David W. Kerstetter, Amy Hirons, Christopher Blanar

Marine & Environmental Sciences Faculty Datasets

This extended table documents the endoparasites found within great egrets, great blue herons, green herons, yellow-crowned night herons, black-crowned night herons and white ibis from this study and previous studies.

Leonardo And The Whale, Kay Etheridge

Biology Faculty Publications

Around 1480, when he was 28 years old, Leonardo da Vinci recorded what may have been a seminal event in his life. In writing of his travels to view nature he recounted an experience in a cave in the Tuscan countryside:

Having wandered for some distance among overhanging rocks, I can to the entrance of a great cavern... [and after some hesitation I entered] drawn by a desire to see whether there might be any marvelous thing within..."

[excerpt]

Ocean Acidification Refugia In Variable Environments, Lydia Kapsenberg, Tyler Cyronak

Marine & Environmental Sciences Faculty Articles

Climate change refugia in the terrestrial biosphere are areas where species are protected from global environmental change and arise from natural heterogeneity in landscapes and climate. Within the marine realm, ocean acidification, or the global decline in seawater pH, remains a pervasive threat to organisms and ecosystems. Natural variability in seawater carbon dioxide (CO₂) chemistry, however, presents an opportunity to identify ocean acidification refugia (OAR) for marine species. Here, we review the literature to examine the impacts of variable CO₂ chemistry on biological responses to ocean acidification and develop a framework of definitions and criteria that connects …

High Heat Tolerance Is Negatively Correlated With Upper Thermal Tolerance Plasticity In North Eastern Pacific Nudibranch Mollusks, Eric J. Armstrong, Richelle L. Tanner, Jonathon H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Rapid ocean warming may alter habitat suitability and population fitness for marine ectotherms. Susceptibility to thermal perturbations will depend in part on plasticity of a species’ upper thermal limits of performance (CT_max). However, we currently lack data regarding CT_max plasticity for several major marine taxa, including nudibranch mollusks, thus limiting predictive responses to habitat warming for these species. In order to determine relative sensitivity to future warming, we investigated heat tolerance limits (CT_max), heat tolerance plasticity (acclimation response ratio), thermal safety margins, temperature sensitivity of metabolism, and metabolic cost of heat shock in nine species …

Unexplored Diversity Of The Mesophotic Echinoderm Fauna Of The Easter Island Ecoregion, Ariadna Mecho, Erin E. Easton, Javier Sellanes, Matthias Gorny, Christopher Mah

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Easter Island ecoregion (EIE) is one of the most remote marine areas of the world and encompasses a vast and fragile ecosystem including oceanic islands and seamounts. In January 2014 and March 2016, a remotely operated vehicle was used to explore a subsurface peak off Easter Island (27.23°S, 109.48°W) and a seamount (26.92°S, 110.26°W), respectively located 10 km southwest and 98 km west of the island. More than 950 echinoderms were observed in the 5 h of video recorded during the seven dives conducted at depths between ~ 160 and 280 m. The communities of echinoderms observed at these …

Oxidative Stress, Genotoxicity, And Immune Response Biomarkers Measured In Golden Tilefish (Lopholatilus Chamaeleonticeps) Collected Aboard Multiple R/V Weatherbird Ii Cruises In The Gulf Of Mexico From 2015-08-17 To 2017-07-29, Steven Murawski, Kristina Deak, Larry Dishaw

C-IMAGE data

This dataset contains oxidative stress, genotoxicity, and immune response biomarkers measured in golden tilefish collected aboard the R/V Weatherbird II cruises WB-1602, WB-1603, WB-1701 and WB-1736 in the Gulf of Mexico from 2015-08-17 to 2017-07-29. The dataset contains the location, date and depth of sample collection. In addition it includes the fish species, fish biometric data (such as weight, sex, liver weight, gonad weight, fork and total length) and concentrations or percentages of biomarkers that indicate oxidative stress (plasma superoxide dismutase, plasma sorbitol dehydrogenase, plasma malondialdehyde), immune response (hematocrit and leukocrit percentages, differential white blood cell counts in whole blood, …

Evolving And Sustaining Ocean Best Practices And Standards For The Next Decade, Frank Muller-Karger

Marine Science Faculty Publications

The oceans play a key role in global issues such as climate change, food security, and human health. Given their vast dimensions and internal complexity, efficient monitoring and predicting of the planet’s ocean must be a collaborative effort of both regional and global scale. A first and foremost requirement for such collaborative ocean observing is the need to follow well-defined and reproducible methods across activities: from strategies for structuring observing systems, sensor deployment and usage, and the generation of data and information products, to ethical and governance aspects when executing ocean observing. To meet the urgent, planet-wide challenges we face, …

Expierience, Lukas Suess, Caleb Biggers, Chris Pestano, Gabriel Nguyen

Computer Engineering

The goal of this project is to create a realistic diving simulation to allow users to see what it is like to dive beneath the Cal Poly Pier. As it is now, the simulation includes a model of the pier, a few species, and the framework for user movement. These features were created by the previous project teams. Our team will make additions to the existing project such as more creatures and life. Before any additions are added, the existing code must be optimized. This project will show users how scientific surveys can be conducted, so the ability to conduct …

Tidalsim Senior Project Report, Kent Zhang, Colin Vandervoort

Computer Engineering

Throughout the course of this project, our team helped the Cal Poly Biological Sciences department refine an intertidal zone simulator. The aim of this device is to allow any marine biologist to easily simulate a vast range of tidal zones in order to test animal behaviors within these zones. Another goal of this project is to make each simulation tank independent from the others by using a single microcontroller to handle all inputs and outputs of the system as well as logging all relevant data. The current system is set up so that a separate microcontroller handles dissolved oxygen and …

Coral Microbiome Database: Integration Of Sequences Reveals High Diversity And Relatedness Of Coral-Associated Microbes, Megan J. Huggett, Amy Apprill

Research outputs 2014 to 2021

Coral-associated microorganisms are thought to play a fundamental role in the health and ecology of corals, but understanding of specific coral-microbial interactions are lacking. In order to create a framework to examine coral-microbial specificity, we integrated and phylogenetically compared 21,100 SSU rRNA gene Sanger-produced sequences from bacteria and archaea associated with corals from previous studies, and accompanying host, location and publication metadata, to produce the Coral Microbiome Database. From this database, we identified 39 described and candidate phyla of Bacteria and two Archaea phyla associated with corals, demonstrating that corals are one of the most phylogenetically diverse animal microbiomes. Secondly, …

Effects Of Barotrauma On Four Species Of Pacific Rockfishes (Sebastes Spp.), Lesley Salter

Master's Theses

Physoclistic fish, such as Pacific rockfishes (genus Sebastes), have closed swim bladders that help them regulate their buoyancy. When anglers catch these fish and reel them to the surface, gases within their swim bladder expand due to the decrease in pressure. This can cause their swim bladder to over inflate––a condition known as barotrauma. Overly buoyant fish experiencing barotrauma often struggle to swim back to dwelling depth if released at the ocean’s surface. These fish may experience high rates of mortality by thermal shock caused by the warmer surface temperatures, starvation, predation, or vision problems caused by barotrauma. Assisted …

Padanaram Harbor Management Plan, Kristin Uiterwyk, Steve Bliven, Jack Wiggin, Allison Novelly, Kimberly Starbuck, Jack Carolan

Urban Harbors Institute Publications

The Padanaram Harbor Management Plan was developed over a two‐year period, from 2017–2019, by a broad spectrum of Dartmouth governmental officials, citizens of the Town, regional and state agency staff, and representatives of non‐governmental organizations. There was significant public involvement through open meetings and an online survey. During the entire process, drafts of elements of the Plan were posted on the website of the Planning Board as they became available. The work was supported in consultation with staff of the Urban Harbors Institute from the University of Massachusetts Boston. Funding was provided through a grant from the Massachusetts Seaport Economic …

Fallen Pillars: The Past, Present, And Future Population Dynamics Of A Rare, Specialist Coral–Algal Symbiosis, Andrea Chan, Cynthia L. Lewis, Karen L. Neely, Iliana B. Baums

Marine & Environmental Sciences Faculty Articles

With ongoing changes in climate, rare and ecologically specialized species are at increased risk of extinction. In sessile foundation fauna that reproduce asexually via fragmentation of existing colonies, the number of colonies does not reflect the number of genets and thus can obscure genotypic diversity. Colonies that are the product of fragmentation are not visually distinguishable from colonies that stem from sexual recruits. For this reason, molecular markers are necessary to assess genotypic variation and population structure in clonal organisms such as reef-building corals and their endosymbiotic dinoflagellates. For the rare Caribbean pillar coral, Dendrogyra cylindrus, and its endosymbiotic …

Toward The Ultrasonic Sensing Of Organic Carbon In Seagrass-Bearing Sediments, Gabriel R. Venegas, Abdullah Rahman, Kevin M. Lee, Megan S. Ballard, Preston S. Wilson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Ten percent of all organic carbon (Corg) absorbed by the ocean each year is stored in seagrass-bearing sediments. The preservation of these carbon stores is considered a vital method to mitigate climate change. Seagrass-bearing sediments have been correlated with sediment geophysical properties yet have not been related to sediment acoustic properties. For this purpose, sediment cores were collected from a Thalassia testudinum seagrass meadow in South Texas, USA, where geophysical, acoustical, and Corg properties were measured. It is hypothesized that when deposits of Corg adsorb onto mineral surfaces and are stored in pore spaces, compliant layers between grain contacts and …

Density And Species Richness Of Macrofaunal Benthic Bivalves In North Inlet Estuary, South Carolina, Richard Hawley, Juliana Harding

Honors Theses

Marine benthic bivalves are consumed by higher trophic levels. Bivalve species richness and density depend on temperature, salinity, and location. Biweekly core samples were collected from Bly Creek from 12/2017 to 12/2018. Benthic macrofaunal bivalves were counted and identified to describe density and species richness. Bivalves were also photographed for species identification. Bivalves composed 0% to 17% of the total macrofauna. The maximum bivalve density (8,149 bivalves/m²) was recorded on December 23, 2018. The fewest bivalves were observed from December 2017 through March 2018. Eight bivalve species were recorded during 2018; at least one species was present year-round. …

Microplastics In Fiddler Crabs (Genus Uca), Gabrielle Forbes, Eric Rosch

Honors Theses

Microplastics, as defined by NOAA, are small plastic pieces less than five millimeters long, which cannot be seen with the naked eye. The production of plastic products and plastic use has exponentially increased since the start of plastic usage. Consequently, the amount of plastic waste has also increased greatly. Plastic waste that has been thrown out by humans into the environment breaks down into microscopic pieces, causing harm to organisms that live there. The purpose of this study was to see if there were microplastics passing through fiddler crabs (genus Uca), collected from the marsh at Waties Island, SC. Fecal …

Demersal Fish Use Of Printed Oyster Shells As Nesting Habitat In North Inlet Estuary, Sc, Annie Boyd, Juliana Harding

Honors Theses

Temperate estuarine blenny species establish subtidal territories and nesting sites. Four blenny species co-occur in North Inlet, SC including the striped blenny, Chasmodes bosquianus, crested blenny, Hypleurochilus geminatus, feather blenny, Hypsoblennius hentzi, and freckled blenny, Hypsoblennius ionthas. All four fishes use empty oyster (Crassostrea virginica) shells as nesting sites. Current 3D printer technology was used to create standard nest substrates to describe relationships between blenny habitat use and nest site dimensions. Replicate printed shells of 2 gape widths (5, 7 mm) for each of 2 shell cavity volumes (22 mL, 15mL, Oyster A and …