Life Sciences Commons^™

Developing A General Ai Model For Integrating Diverse Genomic Modalities And Comprehensive Genomic Knowledge, Zhenhao Zhang, Xinyu Bao, Linghua Jiang, Xin Luo, Zheyu Zhang, Jing Yin, Meiqi Zhao, Yichun Wang, Annelise Comai, Joerg Waldhaus, Anders S Hansen, Wenbo Li, Jie Liu

Faculty, Staff and Student Publications

Advances in next-generation sequencing technologies have vastly expanded the availability of diverse genomic, epigenomic, and transcriptomic data, presenting the opportunity to develop a general AI model that integrates comprehensive genomic knowledge into a unified model. Unlike previous predictive models, which are typically specialized to certain tasks, our general AI model unifies a wide range of genomic modalities, such as nascent RNA and ultra-high-resolution chromatin organization, within a multi-task architecture. Using ATAC-seq and DNA sequences as inputs, we incorporated diverse genomic modalities as output, and the model exhibits strong generalizability across different cell types and tissues in all tasks we trained. …

Countermovement Jump Force Plate Metrics As Neuromuscular Indicators For Seasonal Micro-Adaptations And Hitting Performance Variability In Professional Baseball, Brandon Russell Pentheny

Doctoral Dissertations and Projects

This dissertation explored the use of countermovement jump (CMJ) force plate metrics as indicators of neuromuscular status and their relationship to hitting performance variability across a competitive season in professional baseball. Although there is an increase in the integration of sports science and performance analytics in professional sports, a significant gap remains in longitudinal, in-season monitoring models that connect neuromuscular adaptations to hitting-specific outputs, such as bat velocity and ball exit velocity (BEV). This study examined lower-body force production as measured by uniaxial bilateral force plates and how they interact with hitting output task demands over time. Using a longitudinal …

Effect Of Chronic Heat Stress On Duodenal Epithelial Barrier Integrity In Low- And High-Water-Efficient Broiler Chickens, Lulu Liu, Elizabeth S. Greene, Brooklee Roach, Sara Orlowski, Sami Dridi

Poultry Science Faculty Publications and Presentations

Heat stress (HS) has long posed a significant challenge to the poultry industry due to its adverse effects, such as depressed feed intake, decreased growth performance, and increased water consumption. Water efficiency (WE, conversion of water intake into body weight gain), although often neglected, is a key economic and production trait that is significantly affected by HS. Recently, we selected two broiler lines for high WE (HWE) and low WE (LWE) and showed a differential hypothalamic expression of genes involved in water homeostasis regulation. As the gut also plays a significant role in water absorption, the present study aimed to …

Comparing Machine Learning, Deep Learning, And Reinforcement Learning Performance In Culex Pipiens Predictive Modeling, Wei Yin, Sanad H. Ragab, Michael G. Tyshenko, Teresa Patricia Feria-Arroyo, Tamer Oraby

School of Mathematical & Statistical Sciences Faculty Publications

Several machine learning (ML) and deep learning (DL) methods have been used to predict the presence of species in classification problems. Another set of methods, called reinforcement learning (RL), has been used in training agents to perform various tasks, but not in predicting species distribution. Culex pipiens (Diptera: Culicidae), commonly known as the common house mosquito, is a globally distributed species prevalent in temperate and subtropical regions. They serve as a primary vector for West Nile Virus (WNV), a mosquito-borne pathogen that affects humans and other animals. The study objective is to compare the performance of logistic regression, random forest …

The Effects Of Visual And Audio Secondary Cognitive Tasks During Landing: A Statistical Parametric Mapping Analysis Of Hip And Knee Biomechanics, Hillary Nguyen, Amber Lyle, Kevin Tran, Dominic Espinoza, Gerwyn Hughes

International Journal of Exercise Science

International Journal of Exercise Science 18(7): 1367-1380, 2025. https://doi.org/10.70252/KGHI3479 ACL injuries often occur when athletes perform cognitive tasks while performing a landing/cutting movement. This study investigated the effects of secondary cognitive tasks on hip and knee biomechanics during single limb landing. Sixteen recreational athletes (10 females and 6 males, age: 21.6 ± 2.5 years, mass: 65.2 ± 8.9 kg, height 1.66 ± 0.07 m) performed landings on their dominant limb as a single task and while simultaneously performing secondary cognitive tasks (mental arithmetic) provided through audio and visual means. Hip and knee joint angles and moments were calculated in all …

Single Vs. Whole Muscle Group Assessments: Does The Specific Muscle Influence Its Association With Performance?, Carina M. Velasquez, Kealey J. Wohlgemuth, Mckenzie M. Hare, Kathryn E. Southall, Jacob A. Mota

Topics in Exercise Science and Kinesiology

Topics in Exercise Science and Kinesiology Volume 6: Issue 1, Article 11, 2025. Biometric Muscle size and echo intensity are thought to influence muscle function. Unfortunately, previous works often will examine a single muscle from a group of agonists as a metric of whole muscle performance. This approach may not always be the most appropriate to assess performance outcomes. The purpose of the study was to 1) quantify the association of muscle size and echo intensity with vertical jump performance (VJ), 2) Compare the associations between individual and whole muscle group size and echo intensity, 3) determine whether single or …

Berberine–Piperine Co-Treatment As A Potential Therapeutic Strategy For Triple Negative Breast Cancer: An In Vitro Study, Aysha Suliman Alshamsi

Thesis/ Dissertation Defenses

Massive applications were implemented to limit the risks of breast cancer, especially for the aggressive and treatment-resistant subtype triple-negative breast cancer that pose substantial obstacles for conventional approaches; therefore, natural substances have come to light as potential alternatives for anticancer therapy, especially in aggressive subtypes such as triple-negative breast cancer (TNBC). In this respect, berberine (barberry) and piperine (black pepper) are natural substances found in plants that have received extensive attention for their role as phytotherapeutic agents. Berberine has shown anti-inflammatory, antioxidant, and anticancer activities. Piperine is known to improve the bioavailability of other medications and has its own anticancer …

Treadmill Exercise And Indoor Cycling: Self-Selected Intensity, Perceived Enjoyment, And Importance Of Preference For Activity Mode, Ernst A. Hansen, Jonathan Ipsen, Jari Schneider, Simon Petersen, Alexander Petersen, Marianne Lindahl

International Journal of Exercise Science

International Journal of Exercise Science 18(5): 1344-1354, 2025. https://doi.org/10.70252/NCPI2090 For advancement of public health through exercise, exercise intensity and enjoyment are important. We aimed at testing whether self-selected exercise intensity was higher during treadmill exercise than during indoor cycling. Secondly, the enjoyment associated with the two activities was evaluated. Thirdly, in a person-centered analysis, taking into account the participants’ preference for mode of activity, we assessed whether preference for one of the activity modes was accompanied by greater intensity. Healthy adults (n=21) participated in the repeated measures crossover-designed study. They performed 16-min bouts of treadmill exercise and indoor cycling at …

Acute Physiological Responses To Rope Climbing Ergometer High-Intensity Interval Training In Males And Females, Hannah K. Eberhardt, Matthew F. Brisebois, Matthew A. Yeomans, Patrick G. Saracino

International Journal of Exercise Science

International Journal of Exercise Science 18(3): 1355-1366, 2025. https://doi.org/10.70252/EAFV3707 This study aimed to assess the acute physiological responses to a single bout of rope climbing high-intensity interval training (RC-HIIT) and compare the responses between sexes as no data currently exists on this training modality. Following an overnight fast, body composition was assessed, and resting measurements were recorded. Participants then completed an exercise protocol consisting of 10 rounds of maximal effort rope climbing using a 30:60 second work:rest ratio. Gas analysis and heart rate (HR) were recorded continuously. Blood lactate (BLa) was measured following the final work interval. Participants remained seated …

Bluefish (Pomatomus Saltatrix) Neurocranium, Courtney R. Schober, Alyssa Olmeda, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Adsorptive Removal Of Arsenite And Cobalt By Commercial Sorbents, Sevda Joudiazar, Sushma Yadav, Zhiming Zhang, Anshuman Satpathy, Eustace Fernando, Roxana Rahmati, Junchul Kim, Rupali Datta, Dibyendu Sarkar

Michigan Tech Publications

Despite the prevalence and toxicity of heavy metals in the environment, arsenic and cobalt are of particular concern due to their high mobility and bioaccumulation potential, particularly in contaminated groundwater. Herein, we studied the adsorption behavior of commercially available sorbents, including Fluorosorb-100 (FS-100), Fluorosorb-200 (FS-200), and Filtrasorb-400 (F-400), for the removal of arsenite (As(III)) and cobalt (Co(II)), aiming at the selection of filter media in terms of future groundwater remediation. Kinetic analysis revealed that As(III) adsorption followed a pseudo-second-order model, while Co(II) showed mixed first- and second-order behavior, reflecting sorbent-dependent mechanisms. Equilibrium isotherm modeling revealed strong correlations with both Langmuir …

Nepenthes Megastoma (Nepenthaceae), A Micro-Endemic Pitcher Plant From Puerto Princesa Subterranean River National Park, Palawan, Philippines, John Charles A. Altomonte, John Paul R. Collantes, Vernaluz Mangussad, Rene Alfred Anton Bustamante, Alastair S. Robinson

Environmental Science Faculty Publications

Nepenthes megastoma is described and illustrated as a new species from the Puerto Princesa Subterranean River National Park, a UNESCO World Heritage Site in Palawan Philippines. This carnivorous tropical pitcher plant is currently known from just three locations in the Mount Saint Paul karst formation, where it grows on vertical limestone walls. Morphologically, N. megastoma is characterised by its highly branched stems, campanulate pitchers, peltate tendril exsertion, dimorphic upper pitchers, and unidirectionally upturned female flowers. It is assessed as Critically Endangered under the IUCN Red List criteria, based on its restriction to three subpopulations comprising few total individuals. Pitcher morphology …

Shade As An Agro-Technique To Improve Gas Exchange, Productivity, Bioactive Potential, And Antioxidant Activity Of Fruits Of Hylocereus Costaricensis, Milena Maria Tomaz De Oliveira, Noemi Tel-Zur, Francisca Gislene Albano-Machado, Daniela Melo Penha, Monique Mourão Pinho, Marlos Bezerra, Maria Raquel Alcântara De Miranda, Carlos Farley Herbster Moura, Ricardo Elesbão Alves, William Natale, Márcio Cleber De Medeiros Corrêa

Plants, Soils, and Climate Faculty Publications

Hylocereus species are promising for enhancing fruit productivity in arid regions, but high solar radiation often leads to yield loss. This study aimed to evaluate the short-term impact of different shading levels on the physiological performance, productivity, and post-harvest quality of Hylocereus costaricensis under semi-arid conditions. Plants were grown in the field under two shade levels, i.e., 35 and 50% and their performances were compared to plants under control, i.e., 0% of shade or full sunlight. The nighttime CO₂ assimilation and productivity increased significantly by 310.5 and 114.6% and 34.3 and 50.14% for plants under 35 and 50% of …

Data Cleaning With Excel, Rubab Shahzad

Day Family Research Lab Workshop Series

This workshop will delve into the importance of cleaning research data and why clean data is an important part of the larger research data lifecycle. This session will also provide an overview of data cleaning and preprocessing using Microsoft Excel including a hands-on demonstration.

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In Vitro Antiviral Activity Of Cat’S Claw (Uncaria Tomentosa) Bark Extract Against Human Influenza A Virus, Juliann N. Makau, Keith K. Talaam, Mike Odiwuor, Janet M. Majanja, Sophia Musenjeri, Ratika Rahmasari, Samoel A. Khamadi, Ken Watanabe

Pharmaceutical Sciences and Research

Influenza A viruses mutate very fast and this leads to the development of resistance to antivirals, hence the need to find new therapeutics. Due to their extensive traditional use, natural products are crucial resources for the discovery of drugs. Cat’s claw (Uncaria tomentosa), is a tropical vine known for various health benefits and in this study we evaluated its anti-influenza activity. Pulverized material of the stem bark was extracted using 80% ethanol, hot water, and 1% sodium bicarbonate. The extracts were dried and dissolved in dimethylsulfoxide before testing for cytotoxicity and antiviral activity using crystal violet assay. The …

Morphometric And Meristic Analysis Of Labeo Coubie In Esa-Odo Water Reservoir, Esa-Odo, Osun State Nigeria, Olugbemi V. Ekundare, Funmilayo B. Oyekanmi, Mahmud Sanni, Azeez Aransi, Dorcas O. Owolabi

Tanzania Journal of Science

One of the common species of family Cyprinidae found in Nigeria and West Africa is Labeo coubie. They are of commercial importance in West Africa. This study embarked on the assessment of the length- weight relationship, condition factor, morphometrics and meristic characteristics of L. coubie from Esa-Odo water reservoir, Esa-Odo, Osun State Nigeria. A total of 135 (65 males and 70 females) individual L. coubie collected from fishermen were subjected to morphometric and meristic analysis. Results showed 4.90, 5.46 and 5.24 as the b value for male, female and combined sexes respectively, describing positive allometric growth for all the fish …

Antibiofilm Potential Of Zanthoxylum Zanthoxyloides Bark-Extract Against Biofilm-Producing Streptococcus Mutans In Dental Caries, Efunwole Omonike Omolade, Olaitan J. Olubukola, Wahab Abideen A, Oyedara Opemipo Omotayo, Oluwajide O. Odunola

Tanzania Journal of Science

Streptococcus mutans is the major cause of dental caries, which is costly to treat. The burden is worse in low- and middle-income countries, due to poor access to oral health services and diets high in free sugars. Conventional antibiofilm agents in oral health often have side effects, prompting the search for safer and affordable alternatives. This study investigates the antibiofilm activity of Zanthoxylum zanthoxyloides bark extract against biofilm-forming S. mutans. Dental plaque and tooth samples were collected from hospitals after ethical approval. S. mutans was identified using standard microbiological methods on Mitis Salivarius agar supplemented with Bacitracin and potassium tellurite. …

White Bryony (Bryonia Alba), Taun Beddes, Michael Caron, Jacob Hadfield, Cory Ransom

All Current Publications

White bryony is more than just a nuisance plant. It is an aggressive, perennial vine that threatens riparian ecosystems, agricultural lands, and residential landscapes by destructively smothering vegetation. Additionally, its toxicity poses risks to people, livestock, and pets. Early detection and consistent management are critical to reducing its spread in Utah.

Life As An Intern For Njit Stem For Success, Christopher Tava

STEM Month

I joined the STEM for Success Team in May 2023 with two main goals. The first goal was to reach 100 hours worth of contributions, as part of a mandatory internship requirement to graduate from the Academy for Mathematics, Science, & Engineering (AMSE). I reached that goal by early October 2023, although I have been motivated to continue my work with NJIT beyond that hour target. The second goal was to accomplish something that I was proud of with the resources that the New Jersey Institute of Technology (NJIT) provided me. I had heard of former students of AMSE that …

Genomic And Metabolic Network Characterization Of Fusarium Species, Hend Hussain Mueenuddin

Thesis/ Dissertation Defenses

Fusarium covers the wide genus of fungi with over 400 species that are key in agricultural and medical practice. The purpose of the current study was to perform a comprehensive genomic profiling of the 19 Fusarium species that were captured in the National Centre of Biotechnology Information (NCBI) database. The study was made to make a comparison of the data, based on the descriptive statistics of every species, with graphical representation images enabling clear demonstration of the numbers. The study indicated that the chromosomal numbers were in the range of 0-15, the gene count was roughly 11000 -19000, while that …

Cv: Philip Blankenship (Behavioral Neuroscience), Philip Blankenship

Psychology Department Faculty Curricula Vitae

No abstract provided.

Heritage-Based City Branding Case Study Of Fayoum City, Menna Mounir, Sameir Hammad

Mansoura Engineering Journal

Uniqueness and distinction have become fundamental requirements in promoting and branding cities. Influencing people's perceptions is best achieved by reinforcing the city's identity. This identity is the main component that can transform any ‘space’ into a ‘place’. Promoting a city should extend to highlighting the Heritage, landscape, religious sites, pathways, cuisine, inhabitants, activities, and personal experiences. These elements collectively express the city spirit and enrich visitors’ experience.

This study aims to enhance the image of heritage-based cities by exploring the potential for city branding and leveraging heritage to boost the national economy.

Fayoum was selected as a case study for …

Hydration Strategies In Ultra-Endurance Running: A Narrative Review Of Programmed Versus Thirst-Driven Approaches, Shawn C. Wierick, Rosie I. Perez, Xiujing Zhao, Brendon P. Mcdermott

Health, Human Performance and Recreation Faculty Publications and Presentations

Background/Objectives: Ultra-endurance running (UER) presents unique hydration challenges due to prolonged duration, variable terrain, environmental extremes, and gastrointestinal limitations. Athletes often use either programmed fluid intake (PFI), which prescribes fluid volumes based on estimated sweat rate, or thirst-driven fluid intake (TDFI), which relies on internal cues. This review examines the effectiveness and limitations of each strategy in the context of UER performance and safety. Methods: A narrative review was conducted using a targeted selection of peer-reviewed studies. Both laboratory- and field-based research were included to evaluate the physiological rationale, practical feasibility, and outcomes associated with PFI and TDFI. A total …

Epigenetic Landscape In Lysosomal Storage Disorders: Mechanisms And Modulation, Andrés Felipe Leal, Harry Pachajoa, Shunji Tomatsu

Department of Pediatrics Faculty Papers

Lysosomal storage disorders (LSDs) are rare substrate-accumulating diseases primarily characterized by mutations in genes encoding proteins involved in lysosomal function, most of which have enzymatic activity. Resulting lysosomal dysfunction leads to the overaccumulation of non- or partially degraded substrates. While it is true that enzyme deficiency is the primary cause of LSDs, the epigenetic alterations in DNA methylation, miRNA expression, and histone modifications appear to be critical mechanisms involved in the pathogenesis of LSDs. As epigenetic marks are, in most cases, reversible, their study becomes vital to developing strategies aimed at reversing epigenome alterations. Although classical therapeutic alternatives aim to …

The Web Of Tpd Reform: A Reflective Tool For Analyzing And Improving Teaching Professional Development Programs For Teaching Assistants, Adam J. Chouinard, Diyala S. Shihadih, Star W. Lee, Stephanie J. Gutzler, Kaleb K. Heinrich, Mitra Asgari, Erin Shortlidge

Biology Faculty Publications and Presentations

Teaching assistants (TAs) play a pivotal role in the teaching mission of higher education, but too often they are asked to do this important job without adequate teaching professional development (TPD). By receiving training in inclusive and evidence-based teaching practices, TAs can in turn help disseminate effective teaching methods for the benefit of students throughout the nation; as future faculty, TPD also better prepares TAs for their careers, helps solve longstanding problems of inclusion and retention in STEM, and reforms disciplinary educational norms through cultural evolution. Thanks to prior research and advocacy efforts, there is a growing awareness that STEM …

Reprogramming Tumor Microenvironment Via Systemic Delivery Of Tlr3 Agonist And Manganese Nanoparticle, Young Seok Cho, Xingwu Zhou, Xiaoqi Sun, Ziye Wan, Julia Crowther, Mariko Takahashi, Swetha Kodamasimham, Qi Wu, May Thazin Phoo, Youngseo Na, Kai Han, Zaiye Li, Anna Schwendeman, Steven P Schwendeman, Yu Leo Lei, James J Moon

Faculty, Staff and Student Publications

Toll-like receptor (TLR) agonists, as potent immunostimulatory adjuvants, play a critical role in linking the innate and adaptive immune responses. However, their antitumor effects as cancer immunotherapeutic agents have been limited. Here, we report our finding that manganese ion (Mn2+) potentiates various TLR agonists, leading to robust activation of the TLR pathway and the stimulator of interferon genes (STING) pathway among innate immune cells. In particular, we have observed robust antitumor efficacy after intratumoral administration of a TLR3 agonist and Mn2+. To achieve systemic codelivery of TLR3 agonist and Mn2+, we have developed a low-molecular-weight poly(inosinic:cytidylic acid)-Mn2+ coordination lipid nanoparticle …

Differences In Dieting Behavior In Athletic Trainers, Emily Madrak, Ki L. Cole, Bridget M. Miller, Jennifer L. Volberding

Journal of Sports Medicine and Allied Health Sciences: Official Journal of the Ohio Athletic Trainers Association

Introduction: Athletic trainers (ATs) have a foundational knowledge in many facets of health, including optimization of wellness. Though ATs may be actively trying to improve their own health, societal pressure can have a large impact on behavior. The purpose of this study was to identify differences between gender and years-certified in diet patterns in ATs. Methods: A cross-sectional survey was distributed to 2500 National Athletic Training Association members, It included a demographics section and five-item researcher-created questions regarding diet. Chi-square tests of independence were used to determine the relationship. Results: Significance was determined for gender and question 2, “Have …

Comparing Lower Extremity Kinematics Using Trazer And Inertial Motion Capture Systems, Gabriella Juoza-Clark Spt, Joellen Carter Spt, Nikki Stam Spt, Kevin Robinson Pt, Dsc, Ocs

Journal of Sports Medicine and Allied Health Sciences: Official Journal of the Ohio Athletic Trainers Association

Introduction: This study assessed the validity of a non-immersive body motion tracking system (TRAZER) as an alternative to using Inertial Measurement Units (IMU)-based motion capture (MyoMotion) for lower extremity kinematic analysis. Methods: Twenty healthy participants (10 females, 10 males) with a mean age of 24.03 years (range: 20-33 years) and a mean BMI of 25.15 kg/m² (range: 18.45-32.23 kg/m²) performed double and single-leg squats. Data Analysis: Kinematic data from TRAZER and MyoMotion IMUs were compared using a mixed two-way ANOVA. Results: No significant differences were observed in knee flexion data across all movements (p > 0.05) and knee abduction during the …

Parameters Of Suspension Training On Core Performance: A Critically Appraised Topic, Sara Stiltner, Andrea Cripps

Journal of Sports Medicine and Allied Health Sciences: Official Journal of the Ohio Athletic Trainers Association

Clinical Scenario: The core is a functional unit connecting the upper and lower extremities consisting of abdominal, back, and hip musculature. A highly functional core is essential within the kinetic chain and aids in injury prevention and rehabilitation. Traditional means of core stability training are performed on a stable surface. An emerging mode of core training is suspension training (ST), which utilizes a movement paired with instability to challenge the core stabilizers and increase motor unit recruitment.The purpose of suspension training is to increase muscle activation in core stabilizer’s, while mimicking functional movements.It was the purpose of this research to …

Using External Visual Feedback Techniques To Improve Chronic Ankle Instability: A Critically Appraised Topic, Paxtyn Watkins, Bradlee Wells, Aric J. Warren

Journal of Sports Medicine and Allied Health Sciences: Official Journal of the Ohio Athletic Trainers Association

Introduction: Lateral ankle sprains (LAS) are among the most common musculoskeletal injury in physically active populations posing a substantial health burden. Individuals who sustain ankle sprains often have a diminished quality of life with prolonged symptoms, decreased levels of physical activity, and the propensity to develop chronic ankle instability (CAI). It is estimated that up to 40% of people who sustain an initial lateral ankle sprain will develop CAI. Many therapeutic interventions exist to help alleviate symptoms and the feeling of “giving out.” This critically appraised topic will examine multiple interventions that involve using external visual feedback methods to improve …