Life Sciences Commons^™

Sex-Specific Aging In Animals: Perspective And Future Directions, Anne M. Bronikowski, Richard P. Meisel, Peggy R. Biga, James R. Walters, Judith E. Mank, Erica Larschan, Gerald S. Wilkinson, Nicole Valenzuela, Ashley Mae Conard, João Pedro De Magalhães, Jingyue (Ellie) Duan, Amy E. Elias, Tony Gamble, Rita M. Graze, Kristin E. Gribble, Jill A. Kreiling, Nicole C. Riddle

Biological Sciences Faculty Research and Publications

Sex differences in aging occur in many animal species, and they include sex differences in lifespan, in the onset and progression of age-associated decline, and in physiological and molecular markers of aging. Sex differences in aging vary greatly across the animal kingdom. For example, there are species with longer-lived females, species where males live longer, and species lacking sex differences in lifespan. The underlying causes of sex differences in aging remain mostly unknown. Currently, we do not understand the molecular drivers of sex differences in aging, or whether they are related to the accepted hallmarks or pillars of aging or …

Similarities In Virulence And Extended Spectrum Beta-Lactamase Gene Profiles Among Cefotaxime-Resistant Escherichia Coli Wastewater And Clinical Isolates, Elizabeth Liedhegner, Brandon Bojar, Rachelle E. Beattie, Caitlin Cahak, Krassimira R. Hristova, Troy Skwor

Biological Sciences Faculty Research and Publications

The World Health Organization has identified antibiotic resistance as one of the largest threats to human health and food security. In this study, we compared antibiotic resistance patterns between ESBL-producing Escherichia coli from human clinical diseases and cefotaxime-resistant environmental strains, as well as their potential to be pathogenic. Antibiotic susceptibility was tested amongst clinical isolates (n = 11), hospital wastewater (n = 22), and urban wastewater (n = 36, both influent and treated effluents). Multi-drug resistance predominated (>70%) among hospitalwastewater and urban wastewater influent isolates. Interestingly, isolates from clinical and urban treated effluents showed similar multi-drug …

Identifying Gene Network Patterns And Associated Cellular Immune Responses In Children With Or Without Nut Allergy, Khui Hung Lee, Anthony Bosco, Michael O'Sullivan, Yong Song, Jessica Metcalfe, Kan Yu, Benjamin J. Mullins, Richard Loh, Guicheng Zhang

Research outputs 2022 to 2026

Background: Although evidence suggests that the immune system plays a key role in the pathophysiology of nut allergy, the precise immunological mechanisms of nut allergy have not been systematically investigated. The aim of the present study was to identify gene network patterns and associated cellular immune responses in children with or without nut allergy. Methods: Transcriptome profiling of whole blood cells was compared between children with and without nut allergy. Three genes were selected to be validated on a larger cohort of samples (n = 86) by reverse transcription-polymerase chain reactions (RT-qPCR). The composition of immune cells was inferred from …

Vegetable Diseases Of Utah, Claudia Nischwitz, Marion Murray, Nick Volesky

All Current Publications

This guide provides a list of vegetable crop diseases that have been documented in Utah along with some that are likely to occur. Plant diseases are caused by pathogens such as fungi, bacteria, viruses, and fungal-like organisms. Diagnosing specific plant diseases takes careful observation of signs, symptoms, and sometimes culturing and molecular testing in a laboratory setting.

Celosia Cut Flower Production In Utah, Anna Collins, Melanie Stock, Maegen A. Lewis, Sheriden M. Hansen

All Current Publications

Celosia is a warm-season annual that can be grown in a field or high tunnel in Utah. Transplant plugs after last frost in the field and 6 to 8 weeks before last frost in a high tunnel. Celosia benefit from trellising to promote straight stems and do best with moderate soil fertility and frequent harvesting. Peak harvest occurs from July – September in the field and begins nearly one month earlier in a high tunnel. Once established, celosia thrive in Utah’s hot summers and can be used in fresh or dried arrangements.

Transpiration Responses Of Herbicide-Resistant And -Susceptible Palmer Amaranth (Amaranthus Palmeri (S.) Wats.) To Progressively Drying Soil, Koffi Badou Jeremie Kouame, Mary Savin, Gulab Rangani, Thomas R. Butts, Matthew B. Bertucci, Nilda Roma-Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Drought events are predicted to increase in the future. Evaluating the response of herbicide-resistant and -susceptible weed ecotypes to progressive drought can provide insights into whether resistance traits affect the fitness of resistant weed populations. Two experiments were conducted in the greenhouse between January and May 2021 to evaluate drought tolerance differences between Palmer amaranth accessions resistant to S-metolachlor or glyphosate and their susceptible counterparts. The accessions used were S-metolachlor-resistant (17TUN-A), a susceptible standard (09CRW-A), and glyphosate-resistant (22–165 EPSPS copies) and glyphosate-susceptible (3–10 EPSPS copies) plants from accession 16CRW-D. Daily transpiration of each plant was measured. The daily transpiration rate …

Support Systems And Patient Care Delivery For Nonnative English-Speaking Patients: A Study Of Secondary School Athletic Trainers, Brea M. Stanton, Matthew J. Rivera, Zachary K. Winkelmann Phd, Lat, Atc, Lindsey E. Eberman

Faculty Publications

Context

Nonnative English speakers (NNESs) in the United States have more than doubled since 1990, increasing the likelihood of their seeking health care and experiencing language barriers. Language barriers in health care result in ineffective communication, a decreased level of care, and a reduction in overall provider satisfaction.

Objective

To investigate the experiences of secondary school athletic trainers (ATs) who provided care to patients who were NNESs or communicated with their NNES support systems.

Design

Qualitative study.

Setting

Semistructured interviews.

Patients or Other Participants

Fifteen secondary school ATs with experience communicating with NNES patients or their support systems.

Data Collection …

Economics Of Cormorant Predation On Catfish Farms, Carole Engle, Ganesh Kumar, Terrel Christie, Brian S. Dorr, Brian Davis, Luke Roy, Anita Kelly

United States Department of Agriculture Wildlife Services: Staff Publications

The Double-crested Cormorant is the primary avian predator on catfish farms causing significant economic losses primarily due to 1) on-farm expenditures related to bird-management activities and 2) value of the catfish lost to cormorants. This comprehensive economic study quantified these two economic effects by surveying catfish farms in the delta regions of Mississippi and Arkansas. On-farm expenditures for bird scaring were used to quantify bird-management costs. Economic losses from fish consumed by cormorants were quantified by evaluating data from field studies of the abundance, distribution, and diet of cormorants in the Mississippi delta. This study found that catfish farmers …

Climate Change Awareness In The United Arab Emirates, Mariam Matar Abdulla Mohammed Almheiri

Theses

Climate change has focused public attention in the United Arab Emirates (UAE) on the role of society in environmental protection. The objective of this study was to determine the level of public awareness of climate change in the seven emirates of the UAE. The study also aimed to determine the spatial and geographical distribution and gender differences, as well as to investigate the possible influence of human activities on climate change impacts. In a cross-sectional survey, the researcher used a questionnaire to collect data from a sample of 4000 participants to answer the research questions. The drop-off pick-up (DOPU) method …

Imidazole Derivative Improves Antioxidant Status And Causes Differential Alteration Of Redox-Status In Drosophila Melanogaster, Elizabeth Temidayo Oluwayemi, Oluwakemi Josephine Awakan, Abiodun Omokehinde Eseola, Winfried Plass, Oluyomi Stephen Adeyemi

Karbala International Journal of Modern Science

This study investigated the toxicity of a new imidazole compound, 1-(1,4,5-triphenyl-1H-imidazol-2-yl)-naphthalen-2-ol, through the evaluation of selected oxidative stress markers and antioxidants. Both male and female D. melanogaster (3–5 days old) were fed a diet containing the imidazole derivative (20, 50, and 100 mg IMZ/kg diet) for five days. After cessation of imidazole treatment, half the population of the imidazole-exposed flies was homogenized for biochemical assays, while the other half of the flies was allowed to have a normal diet for an additional five days to see if any induced effect would be resolved. Imidazole derivatives did not significantly …

Glcms Based Multi-Inputs 1d Cnn Deep Learning Neural Network For Covid-19 Texture Feature Extraction And Classification, Elaf Ali Abbood, Tawfiq A. Al-Assadi

Karbala International Journal of Modern Science

Coronavirus disease 2019 epidemic (COVID-19) is an infectious disease that appeared because of the newest version of discovered coronavirus. The advent and rapid spread of this disease over the world necessitated a concerted effort to contain and eradicate it. Computer Tomography (CT) imaging and X-Ray images are considered as one of the important medical examinations used for disease diagnosis. To speed up and confirm the correctness of the medical diagnosis, many artificial intelligence techniques and machine learning methods are proposed. In this paper, a new and efficient proposed system is introduced to extract appropriate and meaningful features for CT scans …

A Convenient Green Method To Synthesize Β-Carotene From Edible Carrot And Nanoparticle Formation, Baker A. Joda, Zena M. Abed Al-Kadhim, Hussian J. Ahmed, Alaa K. H. Al-Khalaf

Karbala International Journal of Modern Science

A simple green chemistry approach was used to synthesize β-carotene from edible carrot without using solvent and heat. In this study, beta-carotene was extracted from edible carrots through a natural extraction method with several physical technical steps. The extracted sample was isolated using high-performance liquid chromatography (HPLC). A β-carotene peak was detected from HPLC with an absorbance maximum (2.135 mAU). The absorption of UV-Visible spectrum indicated that beta-carotene absorbs most strongly between 230-300 and 400-500 nm. The functional groups, namely, C=C (1649 cm^-1), =C-H (900-900 cm^-1) vibrations of antisymmetric deformation of CH₃ groups and CH …

Perceptions On Governance For Effective Adaptation To Climate Change Within Community-Based Wildlife Conservancies In Kenya, S. Kibet, Oliver Vivian Wasonga

IGC Proceedings (1977-2023)

Community-based wildlife conservancies (CBC) represent a broad spectrum of new management arrangements and benefit sharing partnerships in natural resource management by none state agents, but who, by virtue of their collective location and activities, are critically placed to shape the present and future status of these resources. This approach of wildlife management is increasingly gaining popularity as an option for achieving sustainable co-existence and complementarity between wildlife conservation and livestock production in the drylands of Kenya. Despite difference in ownership and governance structure in place, all conservancies have instituted new rules of control and access. This study sought to understand …

The Cleaned Approach For Flagging And Addressing Environmental Issues, A. Notenbaert, B. Paul, R. Van Der Hoek, J. Mukiri

IGC Proceedings (1977-2023)

While livestock presents an important livelihood strategy for many smallholders, it is also held responsible for important environmental impacts. In this paper, we used an online survey to identify the perceptions of global livestock experts on environmental impacts of livestock and how these might be tackled. We then explored how the CLEANED environmental ex-ante assessment tool (Comprehensive Livestock Environmental Assessment for improved Nutrition, a secured Environment and sustainable Development = CLEANED) responds to this and how it can be used to influence decision making towards more environmentally-friendly livestock production.

According to the survey, there was general agreement between researchers, development …

Survey Of The Farm Management, Focusing On The Regional Difference And Cattle Farming In Burkina Faso, H. Kumagai, T. Kawashima, A. Sienou, F. Nagumo

IGC Proceedings (1977-2023)

In Burkina Faso the history using of cattle as draft power for cultivation is not long. This study was conducted to investigate the farm management, focusing on the regional difference and the presence of cattle farming in the country. Interview was carried out on 30 farms from B Province in the Centre-West Region consisting of 8 non-cattle owners (BNs) and 22 cattle owners (BCs), and on 9 farms of cattle owners from H Province in the Haut-Bassins Region (HCs) in November 2013. The average household sizes of BNs, BCs and HCs were 16.5, 27.2 and 31.3, respectively. The ratios of …

Sowing Date Affects Dry Matter Yield Of Fodder Beet (Beta Vulgaris L.) Crops And Farm Profitability, Edith N. Khaembah, John M. De Ruiter, S. Maley

IGC Proceedings (1977-2023)

Fodder beet (Beta vulgaris L.) is a high yielding and high energy supplementary ruminant feed. Including the crop in a pasture system means loss in production and additional costs during crop establishment, but economic benefits may be recovered with increased seasonal productivity and feed quality. In this study, the Agricultural Production Systems sIMulator was used to estimate herbage production of a typical dairy farm in the Canterbury region of New Zealand based on using a ryegrass (Lolium perenne L.)-clover (Trifolium repens L.) pasture (“Pasture only”) or pasture in combination with fodder beet …

Machine Learning-Based Soft Computing Regression Analysis Approach For Crime Data Prediction, Rabia Musheer Aziz, Aftab Hussain, Prajwal Sharma, Pavan Kumar

Karbala International Journal of Modern Science

The crime rate in India is considerably increasing day by day. Consequently, the data associated with crime is also increasing, opening doors for data-driven approaches to these data to extract insightful knowledge, which can help police and other law enforcement organizations of the country in crime control and prevention. Crime prediction using machine learning algorithms on crime data can predict region-wise crime counts. In this paper, a machine learning-based soft computing regression analysis approach for Indian Crime Data Analysis (ICDA) is proposed. Different regression algorithms, namely, Simple Linear Regression (SLR), Multiple Linear Regression (MLR), Decision Tree Regression (DTR), Support Vector …

Impact Of Corn Silage Moisture And/Or Kernel Processing At Harvest On Finishing Steer Growth Performance, Efficiency Of Dietary Net Energy Utilization And Carcass Traits, Thomas G. Hamilton, Warren Rusche, Julie Walker, Zachary K. F. Smith

SDSU Beef Day 2022 Summary Publication

Study Description:

Red Angus steers (n = 192; initial shrunk BW = 983 ± 62.3 lbs) were used in the 112 d finishing experiment at the Southeast Research Farm (SERF) of the South Dakota Agricultural Experiment Station in Beresford. Steers were from a single source and obtained from a local SD auction facility. Steers were received 2 weeks prior to trial initiation. Steers were offered a common diet containing 60% concentrate upon arrival. Steers were transitioned to a 90% concentrate diet over the course of 14 d. Steers were consuming the finishing diet (Table 1) at the initiation of the …

The Effect Of Marine Snow Particle Distribution On The Foraging Behavior Of Calanus Pacificus, Elena Beckhaus

Theses

Marine snow is a major component of the biological pump, through which carbon is exported to the deep ocean. The sinking of marine snow can be disrupted by organisms, including many species of zooplankton that ingest or break up aggregates. These processes can have important impacts on planktonic food web dynamics and carbon export. Marine snow can have vertically patchy distributions, occurring in thin layers, which may further affect interactions with zooplankton. In this lab-based study, we examined how the presence of a marine snow layer affects copepod behavior and ingestion.

We conducted a series of experiments in which copepods …

A Twist To The Kirby-Bauer Disk Diffusion Susceptibility Test: An Accessible Laboratory Experiment Comparing Haloferax Volcanii And Escherichia Coli Antibiotic Susceptibility To Highlight The Unique Cell Biology Of Archaea, Heather Schiller, Criston Young, Stefan Schulze, Manuela Tripepi, Mechthild Pohlschroder

College of Life Sciences Faculty Papers

Archaea, once thought to only live in extreme environments, are present in many ecosystems, including the human microbiome, and they play important roles ranging from nutrient cycling to bioremediation. Yet this domain is often overlooked in microbiology classes and rarely included in laboratory exercises. Excluding archaea from high school and undergraduate curricula prevents students from learning the uniqueness and importance of this domain. Here, we have modified a familiar and popular microbiology experiment-the Kirby-Bauer disk diffusion antibiotic susceptibility test-to include, together with the model bacterium Escherichia coli, the model archaeon Haloferax volcanii. Students will learn the differences and similarities between …

Zoonotic Pathogens From Illegally Traded Wildlife Justify Adopting The One Health Perspective In Disease Response, Marianne Allison G. Lee, Vinyl Joseph S. Valeza, Jonathan Patrick H. Yan, Ronald Allan L. Cruz

Biology Faculty Publications

Recent studies have described a direct relationship between the illegal wildlife trade (IWT) and the prevalence of zoonotic pathogens in human populations. In the Philippines, the Philippine Integrated Disease Surveillance and Response (PIDSR) framework outlines the monitoring, response, and management of disease outbreaks, but needs to be updated in the wake of zoonoses from IWT. Here, we identified zoonotic pathogens that may be introduced to human populations through the IWT, pinpointed potential outbreak hotspots, and provided recommendations on how to improve the Philippines’ public health response while considering One Health. Using seizure data from the Biodiversity Management Bureau (DENR-BMB) covering …

Temperaturas Críticas De Primavera Para Yemas De Los Árboles Frutales, Michael Pace, Marion Murray

All Current Publications

Esta publicación enumera las temperaturas primaverales críticas para las yemas de árboles frutales cuando el 10% y 90% de las yemas mueren en diferentes etapas de desarrollo después de 30 minutos de exposición.

Three Complete Mitochondrial Genomes Of Shortfin Mako Sharks, Isurus Oxyrinchus, From The Atlantic And Pacific Oceans, Marissa Mehlrose, Andrea Bernard, Kimberly A. Finnegan, Lauren E. Krausfeldt, Jose V. Lopez, Mahmood Shivji

Biology Faculty Articles

We present complete mitogenome sequences of three shortfin mako sharks (Isurus oxyrinchus) sampled from the western Pacific, and eastern and western Atlantic oceans. Mitogenome sequence lengths ranged between 16,699 bp and 16,702 bp, and all three mitogenomes contained one non-coding control region, two rRNA genes, 22 tRNA genes, and 13 protein-coding genes. Comparative assessment of five mitogenomes from globally distributed shortfin makos (the current three and two previously published mitogenomes) yielded 98.4% identity, with the protein-coding genes ATP8, ATP6, and ND5 as the most variable regions (sequence identities of 96.4%, 96.5%, and 97.6%, respectively). These mitogenome sequences contribute resources …

Determining The Role Of Dendritic Cells During Response To Treatment With Paclitaxel/Anti-Tim-3, Alycia Gardner

USF Tampa Graduate Theses and Dissertations

Intratumoral CD103+ dendritic cells (cDC1) are required for anti-tumor immune responses. In tumors that are poorly responsive to immunotherapeutic approaches targeting T cells, targeting cDC1 represents an alternative approach that may be useful in improving patient response rates. As such, it is critical to understand cDC1 function within tumors, and what may be preventing optimal function of cDC1. TIM-3 is a receptor that is highly expressed by cDC1 in murine and human mammary tumors, and TIM-3 blocking antibodies are currently being evaluated in clinical trials for a number of solid and hematological malignancies. In order to best design combinatorial therapeutic …

Identifying Available Resources And Agricultural Practices Useful In Soil Fertility Management To Support Orange-Fleshed Sweet Potato Cultivation On Smallholder Farms In Mozambique, Rafaela Feola Conz, Engil Isadora Pujol Pereira, Abdul Naico, Maria Isabel Andrade, Johan Six

School of Earth, Environmental, & Marine Sciences Faculty Publications

Orange-fleshed sweet potato is an important source of macro-and micronutrients for humans, particularly in resource-poor rural communities. However, sweet potato cultivation removes large amounts of nutrients from the soil. Hence, soil fertility replenishment is vital to secure long-term food production. The lack of access to fertilizers hinders the ability of farmers to supply and replenish soil nutrients, intensifying food insecurity. This study aimed at identifying locally available organic residues and agricultural practices with potential application in soil fertility management to prevent soil degradation in southern Mozambique. We conducted a survey to gather information on the farmers’ demographics and farming systems …

Knockdown Of Mdm2 In Hepg2 Cell Line: A Step Towards Understanding The Relation Between Mirna590-3p And Its Downstream Target Gene, Mdm2, In Hepatocellular Carcinoma, Jihad Mahmoud

Theses and Dissertations

Background: miRNA 590-3p is a small non-coding RNA that has previously been associated with the occurrence and progression of several cancer types. Its expression pattern and biological role in Hepatocellular carcinoma (HCC), however, remain controversial. Interestingly, a previous study in our lab revealed a tumor suppressing activity of miR-590-3p in HCC and identified the MDM2 gene as the miR-590-3p target gene.

Aim: The current study aimed to knock down the expression of MDM2 in HepG2 cells to understand how the inhibition of MDM2, as a validated downstream target of miR-590-3p, would affect different functional pathways in HCC. In …

Evaluation Of Hermetic Storage Bags For The Preservation Of Yellow Maize In Poultry Farms In Dormaa Ahenkro, Ghana, Bismark Opoku, Enoch Adjei Osekre, George Opit, Augustine Bosomtwe, Georgina Bingham

Department of Entomology: Faculty Publications

Using low-quality maize, resulting from insect pests and fungal attack, for formulating feed reduces chicken performance. This study evaluated the effectiveness of hermetic storage bags to keep insect pest and mycotoxin levels in check in yellow maize. The study was conducted in storehouses at three poultry farms in Dormaa Ahenkro, Bono Region, Ghana. The experiment was set up in a Randomized Complete Block Design with ZeroFly®Hermetic (ZFH), Purdue Improved Crop Storage (PICS), and Polypropylene (PP) bags as treatments. In each treatment, twelve 50 kg samples of untreated maize were each put in 100 kg capacity bags. Two bags in each …

Development Of The Seqcode: A Proposed Nomenclatural Code For Uncultivated Prokaryotes With Dna Sequences As Type, William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna-Louise Reysenbach, Luis M. Rodriguez-R, Ramon Rossello-Mora, Iain Sutcliffe, Stephanus N. Venter

Life Sciences Faculty Research

Over the last fifteen years, genomics has become fully integrated into prokaryotic systematics. The genomes of most type strains have been sequenced, genome sequence similarity is widely used for delineation of species, and phylogenomic methods are commonly used for classification of higher taxonomic ranks. Additionally, environmental genomics has revealed a vast diversity of as-yetuncultivated taxa. In response to these developments, a new code of nomenclature, the Code of Nomenclature of Prokaryotes Described from Sequence Data (SeqCode), has been developed over the last two years to allow naming of Archaea and Bacteria using DNA sequences as the nomenclatural types. The SeqCode …

Offshore Spreading Of A Supercritical Plume Under Upwelling Wind Forcing: A Case Study Of The Winyah Bay Outflow, Alexander E. Yankovsky, Douglas Cahl, George Voulgaris

Faculty Publications

In this study, we present observations of the Winyah Bay (WB) plume (SC, United States) formed by high freshwater discharge and a moderate upwelling-favorable wind acting continuously for ∼1.5 days prior to the shipboard survey. If a similar wind forcing persists over a longer period, the plume turns upstream (against its natural propagation) and curves offshore forming a “filament” with minimal transverse spreading, as seen in numerous satellite images. The observed plume comprises a train of tidal sub-plumes undergoing rotational adjustment and being transported offshore by Ekman dynamics. The WB outflow is supercritical in terms of the interior Froude number. …

A Predictive Model For Geographical Location Using Microbiome Composition And Covid-19 Based Analysis, Ahmed Adel Aboushanab

Theses and Dissertations

The human microbiome is a main contributor for the health and welfare of the human body. It is affected by many factors like diet and hygiene. These factors differ between different populations. Testing the population-microbiome differences using healthy samples from different countries is the first objective of this study. This data was then used in training and testing machine learning models (Random Forest and L2-logistic Regression Classifiers) for the prediction of the geographical location based on the microbiome data. Random Forest Classifier had the highest accuracy. Feature importance analysis showed that the data for Proteobacteria, Actinobacteria, and Bacteroidetes improved the …