Life Sciences Commons^™

Reproductive Diapause In The Ladybird Beetle Cycloneda Munda, John J. Obrycki

Lady Beetle Research Data

Adult Cycloneda munda were collected from Fayette County, Kentucky (38.12°N, 84.54°W). Eggs were collected daily from 4 to 6 females and placed in L:D 16:8, 14:10, 12:12,10:14, at 22°C ± 1.0°C. F1 offspring were individually reared in glass vials at each photoperiod on pea aphids and Ephestia kuehniella eggs to examine the effects of photoperiod on development (Data file 1: C-munda-Dev-Times-at-LD.jmp). Comparisons of the developmental responses to the four LD treatments were made. Pairs of F1 Cycloneda munda adults were maintained at the same larval photoperiod. Pairs were fed and maintained at each photoperiod for 110 days. The date of …

Transformation Of Major Peanut (Arachis Hypogaea) Stilbenoid Phytoalexins Caused By Selected Microorganisms, Victor S. Sobolev, Travis E. Walk, Renee S. Arias, Alicia N. Massa, Valerie A. Orner, Marshall C. Lamb

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The peanut plant accumulates defensive stilbenoid phytoalexins in response to the presence of soil fungi, which in turn produce phytoalexin-detoxifying enzymes for successfully invading the plant host. Aspergillus spp. are opportunistic pathogens that invade peanut seeds; most common fungal species often produce highly carcinogenic aflatoxins. The purpose of the present research was to evaluate the in vitro dynamics of peanut phytoalexin transformation/detoxification by important fungal species. This work revealed that in feeding experiments, Aspergillus spp. from section Flavi were capable of degrading the major peanut phytoalexin, arachidin-3, into its hydroxylated homolog, arachidin-1, and a benzenoid, SB-1. However, Aspergillus niger from …

Significant Changes In Cost Of Production For 2022 Crops, Glennis Mcmclure

Cornhusker Economics

For the 2022 crop production year, eighty-four Nebraska crop budgets, including two cover crops and a pasture budget, were prepared by crop specialists and extension economists at the University of Nebraska -Lincoln. The 2022 crop budget information is provided in three formats including the new report format from the Center’s new Agricultural Budget Calculator (ABC). Excel and printable pdf file versions are available as well.

Nutritional Status And Dietary Intake Of School-Age Children And Early Adolescents: Systematic Review In A Developing Country And Lessons For The Global Perspective, Durray Shahwar Abid Khan, Jai K. Das, Shagufta Zareen, Zohra S. Lassi, Afsah Salman, Muhammad Raashid, Aftab A. Dero, Aijaz Khanzada, Zulfiqar Ahmed Bhutta

Department of Paediatrics and Child Health

Background: The prevalence of double burden of malnutrition (DBM) is high in low- and middle-income countries (LMICs). Data on malnutrition trends is present for children age, however the data for school-going children and adolescents aged 5-15 years is scarce.
Objective: This systematic review presents the pooled prevalence of nutritional status and dietary intake among school-going children and adolescents (5-15 years of age) in an LMIC of Pakistan and the perspective for broader global nutrition in this age group.
Methods: An electronic search of databases was run on Pubmed and Medline (via Ovid) along with gray literature and archives of local …

Filling The Gap: Molting Behavior Of Colima Warblers And Research Opportunities For Understudied North American Songbirds, Benjamin Gochanour, Jose L. Alcantara, Paula Cimprich, Jeffrey F. Kelly, Andrea Contina

School of Integrative Biological & Chemical Sciences Faculty Publications

We implemented stable isotope analysis to evaluate the molt behavior of the Colima warbler (Leiothlypis crissalis), an understudied migratory songbird occurring in Mexico and recently discovered breeding in the southern part of Texas, USA. We built a geostatistical model showing variation in deuterium precipitation values (d2Hp) across a latitudinal gradient within the Colima warbler breeding range in northeastern Mexico. Then, based on stable isotope ratios of deuterium in feathers (d2Hf), we assigned wintering Colima warblers captured in Central Mexico to possible molting areas near the southwestern portion of the species' breeding range. To the best of our knowledge, this is …

Comparison Of Human Urinary Exosomes Isolated Via Ultracentrifugation Alone Versus Ultracentrifugation Followed By Sec Column-Purification, Kun Huang, Sudha Garimella, Alyssa Clay-Gilmour, Lucia Vojtech, Bridget Armstrong, Madison Bessonny, Alexis Stamatikos

Faculty Publications

Chronic kidney disease is a progressive, incurable condition that involves a gradual loss of kidney function. While there are no non-invasive biomarkers available to determine whether individuals are susceptible to developing chronic kidney disease, small RNAs within urinary exosomes have recently emerged as a potential candidate to use for assessing renal function. Ultracentrifugation is the gold standard for urinary exosome isolation. However, extravesicular small RNA contamination can occur when isolating exosomes from biological fluids using ultracentrifugation, which may lead to misidentifying the presence of certain small RNA species in human urinary exosomes. Therefore, we characterized human urinary exosomal preparations isolated …

An Efficient Method Of Evaluating Multiple Concurrent Management Actions On Invasive Populations, Amy J. Davis, Randy Farrar, Brad Jump, Parker Hall, Travis Guerrant, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Evaluating the efficacy of management actions to control invasive species is crucial for maintaining funding and to provide feedback for the continual improvement of management efforts. However, it is often difficult to assess the efficacy of control methods due to limited resources for monitoring. Managers may view effort on monitoring as effort taken away from performing management actions. We developed a method to estimate invasive species abundance, evaluate management effectiveness, and evaluate population growth over time from a combination of removal activities (e.g., trapping, ground shooting) using only data collected during removal efforts (method of removal, date, location, number of …

The Optimum Grazing Time Based On Milk Fatty Acids And Yield For Holstein Lactating Cows Through Eco-Pastoral System In Alpine Grassland, M. Kim, J. Y. Kim, M. H. Jo, C. H. Kim, K. Sung

IGC Proceedings (1977-2023)

This study aimed to detect the optimum grazing time based on milk fatty acids and yield for the Holstein cow (Bos taurus) through eco-pastoral system in Korean alpine grassland. The treatment of grazing time was 3 levels: Non-grazing, Half-day grazing, Full-day grazing. First, the difference of milk fatty acids (saturated fatty acid, unsaturated fatty acid, Total ω-3, etc.) and milk yield was checked by grazing time via ANOVA. Second, various measurements of milk fatty acids were reduced to principal components for effective and obvious detecting the variation as a grazing time. Final, the variations of milk fatty acid …

Prospects Of Cattle Farming In An Era Of Land Degradation-Perceptions Of The Farmers In The Okakarara Communal Area, Namibia, H. T. N. Heita, D. Gunner

IGC Proceedings (1977-2023)

Livestock farming plays an important role in many rural people s’ livelihoods around the globe. The sector is, however, faced with numerous challenges, particularly land degradation. Namibia, one of the driest countries in the world, is no exception to land degradation challenges, mostly among communal rangeland areas. Several studies and interventions on land degradation have been conducted in the country, however, with limited or no information on farmers' perceptions. Although land degradation may be a physical process, understanding its causes, process, indicators, and effects from the own users’ is indispensable. Here, we assessed farmers' perception in the eastern part of …

Effects Of Seasonal Rest Grazing And Diet Selection Of Sheep On Pasture Composition In Bromus Inermis Improved Meadow Steppe, H. Zhang, Y. J. Zhang, N. Liu

IGC Proceedings (1977-2023)

To develop sustainable grazing management systems based on highly-productive dominant species, it is critical to maintain pasture growth and prevent land degradation on meadow steppe. A field study was performed to identify the impact of seasonal rest grazing on diet selection of sheep and pasture composition in Bromus inermis improved meadow steppe from 2015 to 2017 in Hulunbuir, Inner Mongolia, China. Three seasonal rest grazing strategies were conducted: R1 included a spring rest from June 15 to July 15, R2 a summer rest from July 15 to August 15 and R3 an autumn rest from August 15 to September 15. …

The Effect Of Hay Supplementation On Performance Of Grazing Alpaca In The Peruvian Andes, M. Enciso, C. Gómez, C. Osorio

IGC Proceedings (1977-2023)

Productivity of alpaca grazing rangelands in the Andes is often limited by the low availability and quality of those pastures during the dry season of the year. The use as supplements of forages cultivated during the rainy season in appropriate areas in the Andes may be a strategy to improve performance of alpacas. Therefore, the supplementation of oat-vetch pellets or oat hay was evaluated and compared with a control group without supplementation. Sixty three female alpacas (15 months of age, 34 ± 1.0 kg BW), divided in three groups, grazing range pastures (6.1% crude protein and 61.3% NDF) during dry …

Multiyear Defoliations In Southern New England Increases Oak Mortality, Jeffrey S. Ward, Chad C. Jones, Joseph P. Barsky

Botany Faculty Publications

After decades of multiyear defoliation episodes in southern New England, Lymantria dispar dispar (LDD; previously gypsy moth) populations collapsed with the appearance of the LDD fungus in 1989. Multiyear defoliations did not occur again until 2015-2018. To assess the impact of the return of multiyear defoliations, we examined 3095 oaks on 29 permanent study areas in Connecticut and Rhode Island that were established at least eleven years before the latest outbreaks. Pre-defoliation stand level oak mortality averaged 2% (three-year basis). Post-defoliation mortality did not differ between managed and unmanaged stands, but was much higher in severely defoliated stands (36%) than …

Understanding The Impact Of Fat10 Overexpression On Liver Metabolism, Sharifa Love-Rutledge, Lauren Richardson

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Sex-Related Differences In Aging Rate Are Associated With Sex Chromosome System In Amphibians, Hugo Cayuela, Beth Reinke, 48 Other Co-Authors

Biology Faculty Publications

Sex-related differences in mortality are widespread in the animal kingdom. Although studies have shown that sex determination systems might drive lifespan evolution, sex chromosome influence on aging rates have not been investigated so far, likely due to an apparent lack of demographic data from clades including both XY (with heterogametic males) and ZW (heterogametic females) systems. Taking advantage of a unique collection of capture–recapture datasets in amphibians, a vertebrate group where XY and ZW systems have repeatedly evolved over the past 200 million years, we examined whether sex heterogamy can predict sex differences in aging rates and lifespans. We showed …

Ranking The Biases: The Choice Of Otus Vs. Asvs In 16s Rrna Amplicon Data Analysis Has Stronger Effects On Diversity Measures Than Rarefaction And Otu Identity Threshold, Marlène Chiarello, Mark Mccauley, Sébastien Villéger, Colin R. Jackson

Faculty and Student Publications

Advances in the analysis of amplicon sequence datasets have introduced a methodological shift in how research teams investigate microbial biodiversity, away from sequence identity-based clustering (producing Operational Taxonomic Units, OTUs) to denoising methods (producing amplicon sequence variants, ASVs). While denoising methods have several inherent properties that make them desirable compared to clustering-based methods, questions remain as to the influence that these pipelines have on the ecological patterns being assessed, especially when compared to other methodological choices made when processing data (e.g. rarefaction) and computing diversity indices. We compared the respective influences of two widely used methods, namely DADA2 (a denoising …

2022 Gray Wolf Questions And Answers, United States Fish And Wildlife Service

United States Fish and Wildlife Service: Publications

2022 Gray Wolf Questions and Answers

What does the February 10, 2022, ruling mean?

How does this ruling affect wolves in the Northern Rocky Mountains?

When does the court decision to vacate the delisting rule go into effect?

What is the legal status of gray wolves as of this ruling?

Is the Service continuing its status review of wolves in the western United States?

Is emergency listing an option for the Northern Rocky Mountain population?

Are wolf hunts going to stop as a result of the court decision?

How does this ruling affect wolves in Yellowstone National Park?

Where can …

Houtman Abrolhos Islands Fish Habitat Protection Area: A Summary Of Marine Resource Use And Ecological Attributes, Scott N. Evans, Nick Konzewitsch, Lynda M. Bellchambers

Fisheries Research Reports

The Houtman Abrolhos Islands (Abrolhos) is an archipelago of up to 210 small islands and associated reefs located approximately 65-90 km offshore from Geraldton, Western Australia (WA). The islands and waters of the Abrolhos are of significance for both land-based and marine based values. The marine state territorial waters of the Abrolhos are managed by the Department of Primary Industries and Regional Development (DPIRD) as the Houtman Abrolhos Islands Fish Habitat Protection Area (Abrolhos FHPA). This report aims to provide a summary of the DPIRD data on aquatic resource use (e.g., aquaculture, commercial, recreational and charter fishing) and ecological attributes …

Mako: A Graph-Based Pattern Growth Approach To Detect Complex Structural Variants., Jiadong Lin, Xiaofei Yang, Walter Kosters, Tun Xu, Yanyan Jia, Songbo Wang, Qihui Zhu, Mallory Ryan, Li Guo, Chengsheng Zhang, The Human Genome Structural Variation Consortium, Charles Lee, Scott E Devine, Evan E Eichler, Kai Ye

Faculty Research 2022

Complex structural variants (CSVs) are genomic alterations that have more than two breakpoints and are considered as the simultaneous occurrence of simple structural variants. However, detecting the compounded mutational signals of CSVs is challenging through a commonly used model-match strategy. As a result, there has been limited progress for CSV discovery compared with simple structural variants. Here, we systematically analyzed the multi-breakpoint connection feature of CSVs, and proposed Mako, utilizing a bottom-up guided model-free strategy, to detect CSVs from paired-end short-read sequencing. Specifically, we implemented a graph-based pattern growth approach, where the graph depicts potential breakpoint connections, and pattern growth …

Kentucky Warbler (Vol. 98, No. 1), Kentucky Library Research Collections

The Kentucky Warbler

No abstract provided.

The Casnr L.I.N.K.S. Newsletter: Learning Innovation Network For K-12 Schools, Edition 2, February 2022, Bailey Feit, Tammy Mittelstet

CASNR L.I.N.K.S. Newsletter

The purpose of this L.I.N.K.S. newsletter is to provide a monthly update of opportunities and resources for K-12 schools to connect with the University of Nebraska's CASNR Food, Energy, Water, and Societal Systems (FEWS²) programs and partners.

Included in this edition:

Classroom resources for all levels

Eye on new curriculum

Teacher opportunities

List of new partnerships

Ask an expert

Eye on CASR research: Travis Mulliniks

Student experiences

Send your students to campus

Success stories

Consensus Recommendation For Mouse Models Of Ocular Hypertension To Study Aqueous Humor Outflow And Its Mechanisms., Colleen M Mcdowell, Krishnakumar Kizhatil, Michael H Elliott, Darryl R Overby, Joseph Van Batenburg-Sherwood, J Cameron Millar, Markus H Kuehn, Gulab Zode, Ted S Acott, Michael G Anderson, Sanjoy K Bhattacharya, Jacques A Bertrand, Terete Borras, Diane E Bovenkamp, Lin Cheng, John Danias, Michael Lucio De Ieso, Yiqin Du, Jennifer A Faralli, Rudolf Fuchshofer, Preethi S Ganapathy, Haiyan Gong, Samuel Herberg, Humberto Hernandez, Peter Humphries, Simon W M John, Paul L Kaufman, Kate E Keller, Mary J Kelley, Ruth A Kelly, David Krizaj, Ajay Kumar, Brian C Leonard, Raquel L Lieberman, Paloma Liton, Yutao Liu, Katy C Liu, Navita N Lopez, Weiming Mao, Timur Mavlyutov, Fiona Mcdonnell, Gillian J Mclellan, Philip Mzyk, Andrews Nartey, Louis R Pasquale, Gaurang C Patel, Padmanabhan P Pattabiraman, Donna M Peters, Vijaykrishna Raghunathan, Ponugoti Vasantha Rao, Naga Rayana, Urmimala Raychaudhuri, Ester Reina-Torres, Ruiyi Ren, Douglas Rhee, Uttio Roy Chowdhury, John R Samples, E Griffen Samples, Najam Sharif, Joel S Schuman, Val C Sheffield, Cooper H Stevenson, Avinash Soundararajan, Preeti Subramanian, Chenna Kesavulu Sugali, Yang Sun, Carol B Toris, Karen Y Torrejon, Amir Vahabikashi, Janice A Vranka, Ting Wang, Colin E Willoughby, Chen Xin, Hongmin Yun, Hao F Zhang, Michael P Fautsch, Ernst R Tamm, Abbot F Clark, C Ross Ethier, W Daniel Stamer

Faculty Research 2022

Due to their similarities in anatomy, physiology, and pharmacology to humans, mice are a valuable model system to study the generation and mechanisms modulating conventional outflow resistance and thus intraocular pressure. In addition, mouse models are critical for understanding the complex nature of conventional outflow homeostasis and dysfunction that results in ocular hypertension. In this review, we describe a set of minimum acceptable standards for developing, characterizing, and utilizing mouse models of open-angle ocular hypertension. We expect that this set of standard practices will increase scientific rigor when using mouse models and will better enable researchers to replicate and build …

Extensive Identification Of Genes Involved In Congenital And Structural Heart Disorders And Cardiomyopathy., Nadine Spielmann, Gregor Miller, Tudor I Oprea, Chih-Wei Hsu, Gisela Fobo, Goar Frishman, Corinna Montrone, Hamed Haseli Mashhadi, Jeremy Mason, Violeta Munoz Fuentes, Stefanie Leuchtenberger, Andreas Ruepp, Matias Wagner, Dominik S Westphal, Cordula Wolf, Agnes Görlach, Adrián Sanz-Moreno, Yi-Li Cho, Raffaele Teperino, Stefan Brandmaier, Sapna Sharma, Isabella Rikarda Galter, Manuela A Östereicher, Lilly Zapf, Philipp Mayer-Kuckuk, Jan Rozman, Lydia Teboul, Rosie K A Bunton-Stasyshyn, Heather Cater, Michelle Stewart, Skevoulla Christou, Henrik Westerberg, Amelia M Willett, Janine M Wotton, Willson B Roper, Audrey E Christiansen, Christopher S Ward, Jason D Heaney, Corey L Reynolds, Jan Prochazka, Lynette Bower, David Clary, Mohammed Selloum, Ghina Bou About, Olivia Wendling, Hugues Jacobs, Sophie Leblanc, Hamid Meziane, Tania Sorg, Enrique Audain, Arthur Gilly, Nigel W Rayner, Impc Consortium, Genomics England Research Consortium, Marc-Phillip Hitz, Eleftheria Zeggini, Eckhard Wolf, Radislav Sedlacek, Stephen A Murray, Karen L. Svenson, Robert E Braun, Jacqueline K White, Lois Kelsey, Xiang Gao, Toshihiko Shiroishi, Ying Xu, Je Kyung Seong, Fabio Mammano, Glauco P Tocchini-Valentini, Arthur L Beaudet, Terrence F Meehan, Helen Parkinson, Damian Smedley, Ann-Marie Mallon, Sara E Wells, Harald Grallert, Wolfgang Wurst, Susan Marschall, Helmut Fuchs, Steve D M Brown, Ann M Flenniken, Lauryl M J Nutter, Colin Mckerlie, Yann Herault, K C Kent Lloyd, Mary E Dickinson, Valerie Gailus-Durner, Martin Hrabe De Angelis

Faculty Research 2022

Clinical presentation of congenital heart disease is heterogeneous, making identification of the disease-causing genes and their genetic pathways and mechanisms of action challenging. By using in vivo electrocardiography, transthoracic echocardiography and microcomputed tomography imaging to screen 3,894 single-gene-null mouse lines for structural and functional cardiac abnormalities, here we identify 705 lines with cardiac arrhythmia, myocardial hypertrophy and/or ventricular dilation. Among these 705 genes, 486 have not been previously associated with cardiac dysfunction in humans, and some of them represent variants of unknown relevance (VUR). Mice with mutations in Casz1, Dnajc18, Pde4dip, Rnf38 or Tmem161b genes show developmental cardiac structural abnormalities, …

Disturbance Reduces Fungal White-Rot Litter Mat Cover In A Wet Subtropical Forest, D. Jean Lodge, Ashley E. Van Beusekom, Grizelle González, Mareli Sánchez-Julia, Sarah Stankavich

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Fungi that bind leaf litter into mats and produce white-rot via degradation of lignin and other aromatic compounds influence forest nutrient cycling and soil fertility. Extent of white-rot litter mats formed by basidiomycete fungi in Puerto Rico decreased in response to disturbances—a simulated hurricane treatment executed by canopy trimming and debris addition in 2014, a drought in 2015, a treefall, and two hurricanes 10 days apart in September 2017. Percent fungal litter mat cover ranged from 0.4% after Hurricanes Irma and Maria to a high of 53% in forest with undisturbed canopy prior to the 2017 hurricanes, with means mostly …

Sex Differences In Endurance Exercise Capacity And Skeletal Muscle Lipid Metabolism In Mice, Lola Holcomb, Patrick Rowe, Caitlin O'Neill, Elizabeth Dewitt, Stephen C. Kolwicz Jr.

Health Sciences Faculty Publications

Previous studies suggest that sex differences in lipid metabolism exist with females demonstrating a higher utilization of lipids during exercise, which is mediated partly by increased utilization of muscle triglycerides. However, whether these changes in lipid metabolism contribute directly to endurance exercise performance is unclear. Therefore, the objective of this study was to investigate the contribution of exercise substrate metabolism to sex differences in endurance exercise capacity (EEC) in mice. Male and female C57BL/6-NCrl mice were subjected to an EEC test until exhaustion on a motorized treadmill. The treadmill was set at a 10% incline, and the speed gradually increased …

Body Mass Index (Bmi): A Screening Tool Analysis, Deepesh Khanna, Cadynce Peltzer, Payal Kahar, Mayur S. Parmar

HPD Articles

Body mass index (BMI), a measurement based on a person's height and weight, allows the classification of individuals into categories such as obese or overweight. With these classifications, we can assess risk for hypertension, diabetes, cancer, hypercholesterolemia, and other chronic diseases. Furthermore, childhood BMI serves as a prediction method for health and disease later in life. Along with BMI, researchers also study waist circumference and waist-to-hip ratio in correlation with the above-mentioned chronic illnesses. This brief review explores the associations between body mass index, waist circumference, and the waist-hip ratio as measurements and their capability as predictors for persistent conditions …

Global And Regional Sea Level Rise Scenarios For The United States: Updated Mean Projections And Extreme Weather Level Probabilities Along U.S. Coastlines, William V. Sweet, Benjamin D. Hamlington, Robert E. Kopp, Christopher P. Weaver, Patrick L. Barnard, David Bekaert, William Brooks, Michael Craghan, Gregory Dusek, Thomas Frederikse, Gregory Garner, Ayesha S. Genz, John P. Krasting, Eric Larour, Doug Marcy, John J. Marra, Jayantha Obeysekera, Mark Osler, Matthew Pendleton, Daniel Roman, Lauren Schmied, Will Veatch, Kathleen D. White, Casey Zuzak

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

This report and accompanying datasets from the U.S. Sea Level Rise and Coastal Flood Hazard Scenarios and Tools Interagency Task Force provide 1) sea level rise scenarios to 2150 by decade that include estimates of vertical land motion and 2) a set of extreme water level probabilities for various heights along the U.S. coastline. These data are available at 1-degree grids along the U.S. coastline and downscaled specifically at NOAA tide-gauge locations. Estimates of flood exposure are assessed using contemporary U.S. coastal flood-severity thresholds for current conditions (e.g., sea levels and infrastructure footprint) and for the next 30 years (out …

Diagnostic Accuracy Of Axillary Nodal Ultrasound After Neoadjuvant Chemotherapy In Node-Positive Breast Cancer Patients: A Validation Study, Syeda Sakina Abidi, Lubna Mushtaque Vohra, Asad Ali Kerawala, Imrana Masroor, Muhammad Umair Tahseen

Section of General Surgery

Objective: To determine the accuracy and false negative rate of axillary ultrasound compared to sentinel node biopsy.
Methods: The retrospective study was conducted at the Aga Khan University Hospital, Karachi, from February 1 to March 31, 2021, and comprised data of breast cancer patients who had undergone neo-adjuvant chemotherapy followed by axillary lymph node dissection or axillary disease diagnosed using lymph node biopsy or sentinel lymph node biopsy between January 1, 2016, and December 30, 2020. After receiving neoadjuvant chemotherapy, axillary ultrasound findings were compared with histopathology of lymph nodes. Data was analysed using SPSS 22.
Results: Of the 155 …

Mass Removal Efficiencies In Water And Consequences After A River Diversion Into Coastal Wetlands: Second Thoughts, R. Eugene Turner, Erik M. Swenson, James M. Lee, Charles S. Milan

Faculty Publications

Salinity control, nutrient additions, and sediment supply were directly or indirectly the rationale for a $220 million coastal wetland restoration project (Davis Pond River Diversion) that began in 2002. We sampled Mississippi River water going in and out of the receiving basin from 1999 to 2018 to understand why wetland loss increased after it began. There was a reduction in inorganic sediments, nitrogen (N), and phosphorus (P) concentrations within the ponding area of 77%, 39% and 34%, respectively, which is similar to that in other wetlands. But the average sediment accumulation of 0.6 mm year(-1) inadequately balances the present-day 5.6 …

The Nexus Of Gut Microbiota, Diet, And Health, Sajal Bhattarai, Srinivas Janaswamy

Dairy Science and Food Science Faculty Publications: 2022 to Present

The gut microbiome incorporates the ecological niche specific to the totality of the microorganisms in the human gut. Unique to every individual, the blueprint of the microbiome sets up at birth and functions as a human organ and plays a significant role in digestion, detoxification, fighting pathogens, modulating the immune system, and improving health. The gut microbiota and associated health implications are influenced by factors such as birth and age, diseases, use of antibiotics and food components (e.g., complex carbohydrates and dietary fibers, plant proteins, unsaturated fatty acids, and functional compounds of natural origin such as flavones, flavonoids, polyphenols, and …

Ppld Is A De-N-Acetylase Of The Cell Wall Linkage Unit Of Streptococcal Rhamnopolysaccharides, Jeffrey S. Rush, Prakash Parajuli, Alessandro Ruda, Jian Li, Amol Arunrao Pohane, Svetlana Zamakhaeva, Mohammad M. Rahman, Jennifer C. Chang, Artemis Gogos, Cameron W. Kenner, Gérard Lambeau, Michael J. Federle, Konstantin V. Korotkov, Göran Widmalm, Natalia Korotkova

Molecular and Cellular Biochemistry Faculty Publications

The cell wall of the human bacterial pathogen Group A Streptococcus (GAS) consists of peptidoglycan decorated with the Lancefield group A carbohydrate (GAC). GAC is a promising target for the development of GAS vaccines. In this study, employing chemical, compositional, and NMR methods, we show that GAC is attached to peptidoglycan via glucosamine 1-phosphate. This structural feature makes the GAC-peptidoglycan linkage highly sensitive to cleavage by nitrous acid and resistant to mild acid conditions. Using this characteristic of the GAS cell wall, we identify PplD as a protein required for deacetylation of linkage N-acetylglucosamine (GlcNAc). X-ray structural analysis indicates …