Life Sciences Commons^™

Improving The Functionality Of Water Investments In The Drylands: Learning From Kenya’S County Climate Change Fund, C. Bedelian, M. Bonaya, A. Ibrahim, F. Ngarachu, C. Hesse

IGC Proceedings (1977-2023)

Kenya’s County Climate Change Fund (CCCF) is financing public good investments focused on the water sector to increase the resilience of communities to climate change. In the drylands, investments in water are critical for water and food security, yet ensuring the functionality and sustainability of water investments remains an ongoing challenge. This paper assesses the functionality and sustainability of 62 CCCF water investments in five dryland counties (Isiolo, Wajir, Garissa, Kitui and Makueni) in Kenya through a functionality survey and stakeholder workshops. The survey was designed based on a review of studies assessing the functionality of water supply systems. Across …

Size Estimates Of The Extinct Marine Snake Pterosphenus Schucherti From Eocene-Aged Sediments Of Central Georgia, Colin J. Calvert, Alfred J. Mead, Dennis Parmley

Georgia Journal of Science

Fossil snakes are most often identified from isolated vertebrae, complicating estimations of total body lengths of extinct taxa. Here we estimate the range of total body length of the late Eocene North American palaeophiid marine snake Pterosphenus schucherti based on 29 recently collected fossil vertebrae from Wilkinson County, Georgia, USA. Previous research suggests that the palaeophiids are most closely related to modern boids. Total body length estimates here are based on family-specific regressions of centrum length versus known total body length in extant members of Boidae, Pythonidae, and Colubridae. The high correlation coefficients for the family specific regressions supports previous …

Long-Read Sequencing Of The Zebrafish Genome Reorganizes Genomic Architecture, Yelena Chernyavskaya, Xiaofei Zhang, Jinze Liu, Jessica S. Blackburn

Molecular and Cellular Biochemistry Faculty Publications

BACKGROUND: Nanopore sequencing technology has revolutionized the field of genome biology with its ability to generate extra-long reads that can resolve regions of the genome that were previously inaccessible to short-read sequencing platforms. Over 50% of the zebrafish genome consists of difficult to map, highly repetitive, low complexity elements that pose inherent problems for short-read sequencers and assemblers.

RESULTS: We used long-read nanopore sequencing to generate a de novo assembly of the zebrafish genome and compared our assembly to the current reference genome, GRCz11. The new assembly identified 1697 novel insertions and deletions over one kilobase in length and placed …

Insecticide Resistance In Australian Spodoptera Frugiperda (J.E. Smith) And Development Of Testing Procedures For Resistance Surveillance, Lisa Bird, Melina M. Miles, Adam Quade, Helen Spafford

Biosecurity Research Articles

Spodoptera frugiperda (J.E. Smith) is a highly invasive noctuid pest first reported in northern Australia during early 2020. To document current status of resistance in S. frugiperda in Australia, insecticide toxicity was tested in field populations collected during the first year of establishment, between March 2020 and March 2021. Dose-response was measured by larval bioassay in 11 populations of S. frugiperda and a susceptible laboratory strain of Helicoverpa armigera. Emamectin benzoate was the most efficacious insecticide (LC50 0.023μg/ml) followed by chlorantraniliprole (LC50 0.055μg/ml), spinetoram (LC50 0.098μg/ml), spinosad (LC50 0.526μg/ml), and methoxyfenozide (1.413μg/ml). Indoxacarb was the least toxic …

Cilia Proteins Are Biomarkers Of Altered Flow In The Vasculature, Ankan Gupta, Karthikeyan Thirugnanam, Madhan Thamilarasan, Ashraf M. Mohieldin, Hadeel T. Zedan, Shubhangi Prabhudesai, Meghan R. Griffin, Andrew D. Spearman, Amy Pan, Sean P. Palecek, Huseyin C. Yalcin, Surya M. Nauli, Kevin R. Rarick, Rahima Zennadi, Ramani Ramchandran

Pharmacy Faculty Articles and Research

Cilia, microtubule-based organelles that project from the apical luminal surface of endothelial cells (ECs), are widely regarded as low-flow sensors. Previous reports suggest that upon high shear stress, cilia on the EC surface are lost, and more recent evidence suggests that deciliation—the physical removal of cilia from the cell surface—is a predominant mechanism for cilia loss in mammalian cells. Thus, we hypothesized that EC deciliation facilitated by changes in shear stress would manifest in increased abundance of cilia-related proteins in circulation. To test this hypothesis, we performed shear stress experiments that mimicked flow conditions from low to high shear stress …

Sex Differences In Desiccation Tolerance Varies By Colony In The Mesic Liverwort Plagiochila Porelloides, Juliana Da C. Silva-E-Costa, Andrea P. Luizi-Ponzo, David Nicholas Mcletchie

Biology Faculty Publications

Water scarcity, a common stress factor, negatively impacts plant performance. Strategies to cope with it, such as desiccation tolerance, are becoming increasingly important to investigate. However, phenomena, such as intraspecific variation in stress responses have not received much attention. Knowledge of this variability and the environmental drivers can be leveraged to further investigate the mechanisms of desiccation tolerance. Here we tested for variation in desiccation tolerance in Plagiochila porelloides among colonies and sexes within the same riparian zone. Field-collected dehardened plants were subjected to a desiccation event, under controlled conditions and then rehydrated. Plant water status, photosynthetic rates, net carbon …

Optimizing Graminoid Composition In Cost-Effective Seed Mixes For Prairie Strips, Justin Meissen

Tallgrass Prairie Publications and Reports

In order to reduce nutrient loss and increase other ecological benefits, there is growing interest in integrating reconstructed tallgrass prairie stands within and around crop fields. The most recent Farm Bill creates a new conservation practice (CP-43, Prairie Strips) to encourage prairie vegetation in and around farmed fields for the Conservation Reserve Program (CRP). Because this practice is flexible and easy to integrate into conventionally farmed fields, Prairie Strips have proven very popular, and nearly 15,000 acres have been enrolled in less than 2 years (Farm Service Agency 2021).

To optimize the potential value of this popular nutrient reduction practice, …

Detection Of Methicillin-Resistant Staphylococcus Aureus Infections Using Molecular Methods, Fred C. Tenover, Isabella A. Tickler

Biology Faculty Publications

The application of molecular detection methods for bacterial pathogens has dramatically improved the outcomes of septic patients, including those with methicillin-resistant Staphylococcus aureus (MRSA) infections. Molecular methods can be applied to a variety of clinical specimens including nasal swabs, growth in blood culture bottles, and wounds. While data show that the overall accuracy of molecular tests for MRSA is high, results can be confounded by the presence of multiple staphylococcal species in a specimen, insertions and deletions of DNA in and around the Staphylococcal Cassette Chromosome mec (SCCmec) element, and point mutations in mecA. Herein, we explore the complexities of …

Implementation Of A Drive-Through Covid-19 Mass Vaccination Site: Experiences From Louvax–Broadbent In Louisville, Kentucky, Ruth Carrico, Sarah Beth Hartlage, Valenchia Brown Msn, Aprn, Fnp-C, Sarah M. Bishop, Luanne Didelot, William Hayden, Beverly Williams Coleman, Sarah Tan, Delanor Manson, Kellie Kane, Dawn Balcom, Paul Kern

The University of Louisville Journal of Respiratory Infections

Background: Response to the COVID-19 pandemic has required innovative approaches to vaccination, including methods to rapidly and safely immunize communities. A major challenge to such a response involved access to untapped healthcare worker resources. The Louisville, Kentucky, response involved the use of a large volunteer workforce to supplement local public health employees in planning and implementing a large-scale drive-through vaccination event. The objective of this manuscript was to outline processes involved in training a mass immunization workforce and implementating a large-scale COVID-19 community vaccination.

Approach: Competency-based and standardized training was provided for every volunteer before working their shift. Volunteers worked …

The G Protein-Coupled Serotonin 1a Receptor Augments Protein Kinase C Ε -Mediated Neurogenesis In Neonatal Mouse Hippocampus—Pkc Ε -Mediated Signaling In The Early Hippocampus, Sreyashi Samaddar, Sudarshana Purkayastha, Souleymane Diallo, Subramanyam J. Tantry, Ryan Schroder, Pranavan Chanthrakumar, Michael J. Flory, Probal Banerjee

Publications and Research

The neurotransmitter serotonin (5-HT) plays an important role in mood disorders. It has been demonstrated that 5-HT signaling through 5-HT1A receptors (5-HT1A-R) is crucial for early postnatal hippocampal development and later-life behavior. Although this suggests that 5-HT1A-R signaling regulates early brain development, the mechanistic underpinnings of this process have remained unclear. Here we show that stimulation of the 5-HT1A-R at postnatal day 6 (P6) by intrahippocampal infusion of the agonist 8-OH-DPAT (D) causes signaling through protein kinase Cε (PKCε) and extracellular receptor activated kinase ½ (ERK1/2) to boost neuroblast proliferation in the dentate gyrus (DG), as displayed by an increase …

A Semi-Physiological Three-Compartment Model Describes Brain Uptake Clearance And Efflux Of Sucrose And Mannitol After Iv Injection In Awake Mice, Behnam Noorani, Ekram Ahmed Chowdhury, Faleh Alqahtani, Md Sanaullah Sajib, Yeseul Ahn, Ehsan Nozohouri, Dhavalkumar Patel, Constantinos Mikelis, Reza Mehvar, Ulrich Bickel

Pharmacy Faculty Articles and Research

Purpose

To evaluate a three-compartmental semi-physiological model for analysis of uptake clearance and efflux from brain tissue of the hydrophilic markers sucrose and mannitol, compared to non-compartmental techniques presuming unidirectional uptake.

Methods

Stable isotope-labeled [¹³C]sucrose and [¹³C]mannitol (10 mg/kg each) were injected as IV bolus into the tail vein of awake young adult mice. Blood and brain samples were taken after different time intervals up to 8 h. Plasma and brain concentrations were quantified by UPLC-MS/MS. Brain uptake clearance (K_in) was analyzed using either the single-time point analysis, the multiple time point graphical method, …

Effective Therapy For Aml With Runx1 Mutation By Cotreatment With Inhibitors Of Protein Translation And Bcl2, Christopher P Mill, Warren Fiskus, Courtney D Dinardo, Christine Birdwell, John A Davis, Koichi Takahashi, Naval Daver, Maro Ohanian, Gautam Borthakur, Steven M Kornblau, Michael R Green, Yuan Qi, Xiaoping Su, Joseph D Khoury, Kapil N Bhalla

Faculty, Staff and Student Publications

The majority of RUNX1 mutations in acute myeloid leukemia (AML) are missense or deletion-truncation and behave as loss-of-function mutations. Following standard therapy, AML patients expressing mtRUNX1 exhibit inferior clinical outcome than those without mutant RUNX1. Studies presented here demonstrate that as compared with AML cells lacking mtRUNX1, their isogenic counterparts harboring mtRUNX1 display impaired ribosomal biogenesis and differentiation, as well as exhibit reduced levels of wild-type RUNX1, PU.1, and c-Myc. Compared with AML cells with only wild-type RUNX1, AML cells expressing mtRUNX1 were also more sensitive to the protein translation inhibitor homoharringtonine (omacetaxine) and BCL2 inhibitor venetoclax. Homoharringtonine treatment repressed …

Post-Termination Effects Of Cover Crop Monocultures And Mixtures On Soil Inorganic Nitrogen And Microbial Communities On Two Organic Farms In Illinois, Eleanor E. Lucadamo, Ashley A. Holmes, Samuel E. Wortman, Anthony C. Yannarell

Department of Agronomy and Horticulture: Faculty Publications

Cover crops can continue to affect agricultural systems even after they have been terminated by influencing nitrogen dynamics and by altering soil microbial communities. These post-termination effects can influence soil fertility, weed pressure, and the dynamics of potential plant pathogens in the narrow window of time between cover crop termination and cash crop emergence. We evaluated the post-termination effects of 12 different spring-sown cover crop mixtures and monocultures on soil nitrogen and microbial communities on two different organic farms in Central Illinois (on Lawson silt loam soil) and Northern Illinois (on Virgil silt loam soil). In comparison to control plots …

Post-Termination Effects Of Cover Crop Monocultures And Mixtures On Soil Inorganic Nitrogen And Microbial Communities On Two Organic Farms In Illinois, Eleanor E. Lucadamo, Ashley A. Holmes, Samuel E. Wortman, Anthony C. Yannarell

Department of Agronomy and Horticulture: Faculty Publications

Cover crops can continue to affect agricultural systems even after they have been terminated by influencing nitrogen dynamics and by altering soil microbial communities. These post-termination effects can influence soil fertility, weed pressure, and the dynamics of potential plant pathogens in the narrow window of time between cover crop termination and cash crop emergence. We evaluated the post-termination effects of 12 different spring-sown cover crop mixtures and monocultures on soil nitrogen and microbial communities on two different organic farms in Central Illinois (on Lawson silt loam soil) and Northern Illinois (on Virgil silt loam soil). In comparison to control plots …

Innovative Approaches To Analysing Carbon Sequestration As A Mitigation Strategy In Tropical Pasture Landscapes In Two Emblematic Contexts, The Amazon And The West African Sahel, V. Blanfort, R. Pocard-Chapuis, J. Vayssières, M. Vignes, M. H. Assouma, B. Hubert, A. Ickowicz, S. Fontaine

IGC Proceedings (1977-2023)

The relationship between ruminant production systems and climate change is complex. As a major contributor to greenhouse gas (GHG) emissions, the sector has been the subject of considerable controversy, with particularly severe criticism in the 2000s. However, ten years ago, the attitude towards grazing lands began to change. Their efficient use of non-renewable energy and their contribution to carbon (C) sequestration were considered as key factors in the new environmental challenge. The reality of this mitigation potential was recently called into question once again in the global agriculture and climate change debate, including that of sequestration in the soil where …

Elevated Co2 And Extreme Climatic Events Modify Nitrogen Content And Ruminal Protein Digestion Of Temperate Grassland, V. Niderkorn, C. Picon-Cochard

IGC Proceedings (1977-2023)

This study was aimed at analyzing changes in nitrogen (N) content and in vitro protein rumen digestion of an upland grassland exposed to climate changes in controlled conditions. Monoliths of grassland were inserted in 12 macrocosms in which climatic conditions for the 2050s were simulated (i.e., +2.3°C and 33 mm less precipitation compared to the current climatic conditions). Six of them were subjected to ambient CO₂ (390 ppm) while the other six were subjected to elevated CO₂ (520 ppm). After four months, an extreme climatic event (ECE) consisting of four weeks of reducted precipitation (-50%) followed by two …

Effects Of Climate Variability On Wild Edible Plant Products: A Coping Strategy Applied By Pastoralists Of Northern Kenya, A. W. Kagunyu, J. W. Wanjohi

IGC Proceedings (1977-2023)

Drought which is a manifestation of climate variability has become a perennial problem in Kenya with chronic vulnerability being concentrated in Arid and Semi-Arid lands (ASALs). Traditionally, pastoralists have used wild edible plant products namely; fruits, vegetables and seeds as a coping strategy while faced by climate related calamities. However, recent studies have shown that pastoralists’ traditional coping strategies have become weak as a result of recurrent droughts. The overall objective of this study was to investigate the effects of climate variability on wild edible plant products. This study applied; household interviews (n=400), focus group discussions and key informant interviews …

Drought Mitigation In Bundelkahand Grassland Ecosystem For Improving Livelihood Of Farming Community-A Case Study, N. S. Pasricha, P. K. Ghosh

IGC Proceedings (1977-2023)

Bundelkhand grassland ecosystem (23º20´ and 26°20´N latitude and 78°20´ and 81°40´E longitude) is an undulating rain fed region (annual rain fall, 768-1087 mm) spread over an area of 7.08 m ha in central India in the states of Madhya Pradesh and Uttar Pradesh. This region has to support 16 million human and 8.5 million animal populations. Area is prone to surface run off losses, severe soil erosion and increasingly more drought events, leading to only mono-cropping. Lively-hood of the people, which is mainly the live-stock rearing and marginal agriculture, is at stake. In-situ conservation of rain water, forage management, …

Single-Cell Analysis Of Human Glioma And Immune Cells Identifies S100a4 As An Immunotherapy Target., Nourhan Abdelfattah, Parveen Kumar, Caiyi Wang, Jia-Shiun Leu, William F Flynn, Ruli Gao, David S Baskin, Kumar Pichumani, Omkar B Ijare, Stephanie L Wood, Suzanne Z Powell, David L Haviland, Brittany C Parker Kerrigan, Frederick F Lang, Sujit S Prabhu, Kristin M Huntoon, Wen Jiang, Betty Y S Kim, Joshy George, Kyuson Yun

Faculty Research 2022

A major rate-limiting step in developing more effective immunotherapies for GBM is our inadequate understanding of the cellular complexity and the molecular heterogeneity of immune infiltrates in gliomas. Here, we report an integrated analysis of 201,986 human glioma, immune, and other stromal cells at the single cell level. In doing so, we discover extensive spatial and molecular heterogeneity in immune infiltrates. We identify molecular signatures for nine distinct myeloid cell subtypes, of which five are independent prognostic indicators of glioma patient survival. Furthermore, we identify S100A4 as a regulator of immune suppressive T and myeloid cells in GBM and demonstrate …

Mark-Recapture Study And Habitat Assessment For The Northern Metalmark Butterfly, Calephelis Borealis (Lepidoptera: Riodinidae), Weston J. Henry, Kristian S. Omland, Henry Frye, Wagner L. David

EEB Articles

Background: The northern metalmark (Calephelis borealis), is an exceedingly local, globally rare butterfly that is declining across the Midwestern and Northeastern USA. The principal stressors driving colony losses include afforestation and invasive plants that crowd out its larval hostplant (Packera ovata) and nectar resources.

Aims/Methods: To better understand its declines and guide restoration efforts, we 1) performed a mark-recapture study in Connecticut to document population trends where we were actively managing vegetation; 2) conducted a range-wide survey for evidence of phylogeographic structure, using cytochrome oxidase (CO1); 3) investigated abundance determinants of its larval foodplant, Packera ovata …

Tactical Masters Athletes: Bmi Index Classifications, Marc Keefer, Joe Walsh, Kent Adams, Mike Climstein, Chad Harris, Mark Debeliso

All Faculty Scholarship for the College of Education and Professional Studies

Understanding the nexus between aging, physical activity, and obesity has been a source of ongoing investigation. A considerable amount of research has focused on Masters athletes in this regard, suggesting a beneficial relationship between Masters sport participation and a healthy body mass index (BMI). Some consider Active Duty military personnel as tactical athletes. As such, it is of interest to determine if aging Active Duty military personnel (or Masters Tactical Athletes) might have a similar BMI as other Masters athletes (MA). As such, this investigation examined previously recorded data of Active Duty Enlisted United States Marines (n = 402, male, …

Development And Utilization Of An Isolation Box Test To Characterize Personality Traits Of Dairy Calves, Megan Marie Woodrum Setser, Heather W. Neave, Eric S. Vanzant, Joao H. C. Costa

Animal and Food Sciences Faculty Publications

The use of an isolation box test (IBT) to characterize personality traits has been used in non-bovine species with success. We aimed to develop an IBT for dairy calves and determine if the behavioral responses to an IBT were associated with personality traits found from traditional tests (novel person, novel object, and a startle tests) and average daily gain (ADG; Kg/d) through weaning. Calf movement while in the IBT was measured via accelerometers attached to 5 locations on the exterior of the box. A total movement index (TMI) was calculated based on accelerometer readings during the IBT. We performed a …

Inflation: Just How Bad Is It?, Timothy Meyer

Cornhusker Economics

Amidst the chaotic news cycle of politics, the pandemic, and global affairs, a new topic is making headlines – inflation. To some, rising inflation causes greater fear than the other headlines combined; to others, it is nothing more than a minor nuisance. This article will explain why people’s divisive attitudes toward inflation are likely justified.

Auxin/Cytokinin Antagonistic Control Of The Shoot/Root Growth Ratio And Its Relevance For Adaptation To Drought And Nutrient Deficiency Stresses, Jasmina Kurepa, Jan A. Smalle

Plant and Soil Sciences Faculty Publications

The hormones auxin and cytokinin regulate numerous aspects of plant development and often act as an antagonistic hormone pair. One of the more striking examples of the auxin/cytokinin antagonism involves regulation of the shoot/root growth ratio in which cytokinin promotes shoot and inhibits root growth, whereas auxin does the opposite. Control of the shoot/root growth ratio is essential for the survival of terrestrial plants because it allows growth adaptations to water and mineral nutrient availability in the soil. Because a decrease in shoot growth combined with an increase in root growth leads to survival under drought stress and nutrient limiting …

Lymphoma With Tuberculous Granulomas, Jyoti Mohan Lal, Anila Rashid

Department of Pathology and Laboratory Medicine

Chronic granulomatous inflammation is a common finding in lymphoproliferative disorders (LPDs), but it is important to exclude coexisting mycobacterium tuberculosis (MTB) especially in patients from areas of high endemicity. This case emphasizes the relevance of performing MTB culture on bone marrow exhibiting LPD and concomitant granulomas

Considering Natural Baselines When Calculating Livestock Impacts Point To A Negligible Role Of Grass-Fed Livestock Systems In Climate Change, P. Manzano, S. R. White

IGC Proceedings (1977-2023)

The use of baselines is common in a variety of academic disciplines, including environmental science, but they are subjected to relativity depending on the geographical or historical reference considered. Such considerations are illustrated by how invasive species are evaluated or what reference baselines are considered in biodiversity assessments.

The measurement of livestock effects on climate change has, however, disregarded the use of baselines. Current methodology is based exclusively on greenhouse gas emissions by individual animals, without putting them in their ecological context. As a consequence, current analyses of livestock impacts put grass-fed ruminant systems in the spotlight, because of their …

Comparative Soil Organic Carbon Dynamics In Tropical And Subtropical Grassland Ecosystems, N. S. Pasricha, P. K. Ghosh

IGC Proceedings (1977-2023)

Grassland ecosystems play significant role in mitigating the climate change by sequestering atmospheric CO₂. One fifth of the total terrestrial C is stored in the root zone of grasslands as soil organic carbon. However, because of lack of proper management, overgrazing, and conversion to crop lands, these grasslands are becoming a source of CO₂ emissions. It has been observed that in Imperata grasslands of Northeast India, a third of total C captured annually is lost though CO₂ emissions. In the absence of intensified grazing and burning, these grasslands exhibit significantly high capacity to store SOC stocks. …

Climate Change Threats To Semi-Arid Transhumance Grazing Systems: Proposals For Adaptation In Cabo Verde, J. F. Castro, S. Tavares, M. Castro

IGC Proceedings (1977-2023)

Global warming has changed the rainfall regime in the Sahelian region, endangering and widespread poverty and chronic famines in Cape Verde, where rural communities' well-being and food security depend on rainy agriculture. Local responses to rainfall new patterns and scarcity have been livestock reduction with significant revenue losses. Together with dry mist occurrences, these environmental constraints demand to define priority actions to adapt and mitigate climate change's direct impacts. According to fifty household inquiries, this work explains the transhumant grazing practices on a semi-arid plateau in Tarrafal (Santiago, Cabo Verde), prospecting adaptation alternatives for sustainability. We related grazing patterns and …

Wild Red Deer Benefit The Conservation Of European Semi-Natural Open Habitats, F. Riesch, Bettina Tonn, Marcus Meißner, Sven Herzog, Niko Balkenhol, J. Isselstein

IGC Proceedings (1977-2023)

Traditional land use practices have shaped European landscapes for millennia. Agricultural intensification and declining popularity of pastoral farming in the past century have resulted in a tremendous loss of extensively used open landscapes and associated biodiversity. Today, conservation management needs to prevent secondary succession of many open habitats. Large or inaccessible target areas unsuitable for conventional conservation measures might benefit from grazing by wild herbivores, which do not require fencing nor regular welfare monitoring. In a military training area in Germany, we studied the quantitative and qualitative effects of wild red deer in two protected open habitat types (lowland hay …

Deploying Live Dashboard Data Using Usda Data Apis To Inform Farmers/Producers, Indira Fuyal, Paurakh Paudel, David Zeng

SDSU Data Science Symposium

The main objective of this project is to provide the farmers/producers and small business owners with a data intensive information hub to better understand the market trends and patterns in an interactive way to help make informed decisions. This technology is part of a larger project that includes AI powered data services to provide users with decision making support for real time data solutions. Together with Natural Language Generation, there is a huge potential to deploy this technology. In this small demo of this hugely beneficial technology, we make use of the publicly available Open Data Services – ESR Data …