Life Sciences Commons^™

A Chromosome-Scale Assembly Of The Djulis (Chenopodium Formosanum) Genome, An Emerging Orphan Crop From Taiwan, Peter J. Maughan, Eric N. Jellen, John Sproul, Karol Krak, Tzu-Yun Huang, Tzu Che Lin, Beatriz Navarro Dominguez, Yung-Fen Huang, Kate Jaggi, David E. Jarvis

Library/Life Sciences Undergraduate Poster Competition 2022

Djulis (Chenopodium formosanum Koidz.) is a semi-domesticated Taiwanese native crop. It is a BCD-genome hexaploid (2n = 6x = 54) relative of the Andean-native allotetraploid (AABB) quinoa (C. quinoa). Djulis has been grown in a relatively small area by aboriginal Taiwanese, who use it primarily as a fermentation starter to produce ritual alcoholic beverages. Djulis’ seed protein, like that of quinoa, is complete in terms of its human dietary essential amino acid profile; the seed also offers a wide variety of nutritionally important vitamins and minerals. These nutritional attributes have attracted international attention as a novel, healthy grain option. We …

Whole-Body Vibration Alleviates Symptoms Of Morphine Withdrawal, Gavin C. Jones, Christina A. Small, Dallin Z. Otteson, Scott C. Steffensen

Library/Life Sciences Undergraduate Poster Competition 2022

Whole body vibration at 80 Hz has been shown to blunt neuropathological markers and behavioral symptoms of alcohol dependence Here, we evaluate its ability to ameliorate symptoms of morphine use and withdrawal.

The Role Of Cd5 In Cd4+ T Cell Metabolism, Joshua Bennett, Kiara Whitley, Claudia Freitas Phd, Christopher Haynie, Carlos Moreno, Scott Weber

Library/Life Sciences Undergraduate Poster Competition 2022

T cells serve a key role in the immunological response in the adaptive system. Different receptors present on the T cell have certain roles and are able to either inhibit or stimulate signaling which consequently regulates the function and metabolism of the cell. CD5 is an inhibitory co receptor expressed on the surface of T cells known to regulate thymocyte selection and TCR signaling . Our goal is to better understand the effects of CD5 regulation in metabolism. Using metabolic flux assays, we found that CD5KO naïve T cells have increased glycolysis and mitochondrial respiration in comparison to wild type …

Reviewing The Effects Of Human-Induced Limb Damage In Crabs, Jacob B. Spencer, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

Limb damage in crabs comes in various forms, each with unique consequences. Brachyuran crabs shed limbs as a defensive reflex, with natural breakage occurring along a plane, otherwise known as autotomy. In addition to autotomy, crabs commonly lose limbs due to fishing practices such as declawing. In many areas, taking the limbs and releasing the crab is a common practice. The logic is that the populations won’t decline if the crab is put back. Other practices such as nicking, or cutting the main claw tendon, are used to restrict claw movement. Various effects of these fishery practices have been documented …

Validity Of Ultrasound Imaging For Intrinsic Foot Muscle Cross-Sectional Area Measurements Demonstrated By Strong Agreement With Mri, Dallin C. Swanson, Joshua K. Sponbeck, Derek A. Swanson, Connor D. Stephens, Steven P. Allen, Ulrike H. Mitchell, James D. George, A. Wayne Johnson

Library/Life Sciences Undergraduate Poster Competition 2022

Intrinsic foot muscles maintain foot structural integrity and contribute to functional movement, posture and balance Thus, assessing intrinsic foot muscle size and strength are important One way to assess strength of a muscle is by measuring its cross sectional area ( Magnetic resonance imaging ( and ultrasound ( are two modalities allowing for visualization of these muscle bodies MRI has been shown to accurately image the individual muscles but is costly and time consuming US imaging may provide an alternative that is less costly and more readily available The purpose of this study was to investigate the validity and reproducibility …

Overcoming Detrimental Potato Fungi With The Secondary Metabolites Of Naturally Occurring Streptomyces In A Greenhouse, Hansan Jones, Jacob Anderson, Erik Kemp, Brad Geary, Matthew Madsen, Ryan Stewart

Library/Life Sciences Undergraduate Poster Competition 2022

• Fungal disease Silver scurf can cause 13% water loss and give poor aesthetic appeal, both of which reduce farmers profits (1,2).
• Pythium leak can result in up to 50% total loss of potatoes in storage (3).
• Streptomyces is the right candidate to mitigate or eliminate these losses because of its ability to survive in soil (4) and its history as a proven biocontrol for other plant pathogens (5).

Morphological Changes Of The Asian Shore Crab Across Latitudes, Ainslee Mcmullin, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

The Asian shore crab, Hemigrapsus sanguineus , is an invasive species that has rapidly spread across the Eastern United States coastline. First observed in North America in 1988, its range currently extends from Maine to North Carolina. H. sanguineus has adapted very well to this region and has displaced several native species as the dominant crab in rocky intertidal habitats. Although the Asian shore crab’s biology and interactions with native species has been well studied, larger scale impacts (economic, potential further spread, community ecology, etc.) are under researched. We collected specimen samples of H. sanguineus throughout its entire East coast …

Double Up Food Bucks Csa Program, Hannah Martin, Kelsey Hall

Applied Sciences, Technology and Education Faculty Publications

Double Up Food Bucks (Double Up) is a statewide produce incentive program that allows Supplemental Nutrition Assistance Program (SNAP) customers to access more locally growth, fresh vegetables and fruits at farmers markets, farm stands, and community supported agriculture (CSA) programs. A program of the Utah Department of Health, the benefits of Double Up and SNAP are four-fold: (1) families with low income eat more healthy food, (2) local farmers gain new customers and make more money, (3) more food dollars stay in the local economy, and (4) your community gains increased awareness of your CSA for participation in the Double …

Double Up Food Bucks Farm Stand Program, Hannah Martin, Kelsey Hall

Applied Sciences, Technology and Education Faculty Publications

Double Up Food Bucks (Double Up) is a statewide produce incentive program that allows Supplemental Nutrition Assistance Program (SNAP), formally known as food stamps program, customers to access more locally grown, fresh vegetables and fruits at farmers markets, farm stands, and community supported agriculture (CSA) programs. A program of the Utah Department of Health, the benefits of Double Up and SNAP are three-fold: families with low income eat more healthy food, local farmers gain new customers and make more money, and more food dollars stay in the local economy.

Impacts Of The Covid-19 Pandemic On Food Prices: Evidence From Storable And Perishable Commodities In India, Subir Bairagi, Ashok K. Mishra, Khondoker A. Mottaleb

Agricultural Economics and Agribusiness Faculty Publications and Presentations

The supply chain disruptions caused by the COVID-19 outbreak have led to changes in food prices globally. The impact of COVID-19 on the price of essential and perishable food items in developing and emerging economies has been lacking. Using a recent phone survey by the World Bank, this study examines the impact of the COVID-19 pandemic on the prices of the three essential food items in India. The results indicate that price of basic food items such as atta (wheat flour) and rice increased significantly during the pandemic compared to the pre-pandemic period. In contrast, during the same period, the …

Evaluation Of A Hands-On Cooking Class And Its Effects On Self-Efficacy In Relation To Healthy Eating In Type 2 Diabetics, Codi A. Jenshak-Gorzinski

Doctor of Nursing Practice Scholarly Projects

The prevalence of Type 2 diabetes is alarming and poses a great threat to U.S. national health. Chronic diabetes can lead to serious conditions such as heart attack and stroke, and can result in premature mortality (World Health Organization, 2018). Diabetes can be prevented or treated by eating a healthy diet. Cooking classes are a potential way to improve American’s knowledge of nutritional principles and help them become confident that they have the capacity to eat a healthy diet. The purpose of this DNP project was to determine if participation in cooking classes enhanced self-efficacy as it pertains to healthy …

Nebline, March/April 2022

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Become a Groundwater Steward

4 Ways to Celebrate National Nutrition Month

Recipe of the Month

Selecting Fruit Trees for Eastern Nebraska

Garden Guide: Things to Do This Month

2022 Chemigation Trainings

Lancaster County Ag VIP Awards

Upcoming Early Childhood Trainings

Aleyna Cuttlers Participated in National 4-H Congress

4-H Horse Judging Team at Nationals

Meet 2021–22 4-H Council

Meet 2021–22 4-H Teen Council

Hear of 4-H Volunteer Award: Sherry Kubicek

Hear of 4-H Volunteer Award: Angie Root

4th & 5th Grade Fun Night, March 4

Rabbit Show, March 19

UNL Chick Days, March 26

Bucket Calf Workshop, March 27

Dressage Schooling …

Living A Long Life Is A Multi-Step Process, Alexander H. K. Montoye, Scott A. Conger

Kinesiology Faculty Publications and Presentations

There is a strong link between physical activity and health. Historically, large-scale epidemiological studies have used self-report surveys to capture physical activity measures (eg, type and intensity). In the past 20–30 years, large cohort studies have increasingly adopted devices, such as pedometers, accelerometers, and consumer-marketed activity trackers, to measure physical activity. Device-based physical activity measures alleviate some limitations of self-reporting by increasing measurement objectivity and accuracy. Additionally, device-based measures often show stronger associations with health outcomes than do self-reported measures, showcasing their value in understanding how physical activity affects health. Unlike self-report, device-based measures can capture steps, which are easily …

Multiple Genome Viewer (Mgv): A New Tool For Visualization And Comparison Of Multiple Annotated Genomes., Joel E Richardson, Richard M. Baldarelli, Carol J Bult

Faculty Research 2022

The assembled and annotated genomes for 16 inbred mouse strains (Lilue et al., Nat Genet 50:1574-1583, 2018) and two wild-derived strains (CAROLI/EiJ and PAHARI/EiJ) (Thybert et al., Genome Res 28:448-459, 2018) are valuable resources for mouse genetics and comparative genomics. We developed the multiple genome viewer (MGV; http://www.informatics.jax.org/mgv ) to support visualization, exploration, and comparison of genome annotations within and across these genomes. MGV displays chromosomal regions of user-selected genomes as horizontal tracks. Equivalent features across the genome tracks are highlighted using vertical 'swim lane' connectors. Navigation across the genomes is synchronized as a researcher uses the scroll and zoom …

The Mutant Mouse Resource And Research Center (Mmrrc): The Nih-Supported National Public Repository And Distribution Archive Of Mutant Mouse Models In The Usa., James Amos-Landgraf, Craig Franklin, Virginia Godfrey, Franziska Grieder, Kristin Grimsrud, Ian Korf, Cathleen Lutz, Terry Magnuson, Oleg Mirochnitchenko, Samit Patel, Laura G Reinholdt, K C Kent Lloyd

Faculty Research 2022

The Mutant Mouse Resource and Research Center (MMRRC) Program is the pre-eminent public national mutant mouse repository and distribution archive in the USA, serving as a national resource of mutant mice available to the global scientific community for biomedical research. Established more than two decades ago with grants from the National Institutes of Health (NIH), the MMRRC Program supports a Consortium of regionally distributed and dedicated vivaria, laboratories, and offices (Centers) and an Informatics Coordination and Service Center (ICSC) at three academic teaching and research universities and one non-profit genetic research institution. The MMRRC Program accepts the submission of unique, …

Systematic Reconstruction Of Cellular Trajectories Across Mouse Embryogenesis., Chengxiang Qiu, Junyue Cao, Beth K Martin, Tony Li, Ian C Welsh, Sanjay Srivatsan, Xingfan Huang, Diego Calderon, William Stafford Noble, Christine M Disteche, Stephen A Murray, Malte Spielmann, Cecilia B Moens, Cole Trapnell, Jay Shendure

Faculty Research 2022

Mammalian embryogenesis is characterized by rapid cellular proliferation and diversification. Within a few weeks, a single-cell zygote gives rise to millions of cells expressing a panoply of molecular programs. Although intensively studied, a comprehensive delineation of the major cellular trajectories that comprise mammalian development in vivo remains elusive. Here, we set out to integrate several single-cell RNA-sequencing (scRNA-seq) datasets that collectively span mouse gastrulation and organogenesis, supplemented with new profiling of ~150,000 nuclei from approximately embryonic day 8.5 (E8.5) embryos staged in one-somite increments. Overall, we define cell states at each of 19 successive stages spanning E3.5 to E13.5 and …

Annotated Expression And Activity Data For Murine Recombinase Alleles And Transgenes: The Creportal Resource., Michelle N Perry, Constance M. Smith, Hiroaki Onda, Martin Ringwald, Stephen A Murray, Cynthia L Smith

Faculty Research 2022

Recombinase alleles and transgenes can be used to facilitate spatio-temporal specificity of gene disruption or transgene expression. However, the versatility of this in vivo recombination system relies on having detailed and accurate characterization of recombinase expression and activity to enable selection of the appropriate allele or transgene. The CrePortal ( http://www.informatics.jax.org/home/recombinase ) leverages the informatics infrastructure of Mouse Genome Informatics to integrate data from the scientific literature, direct data submissions from the scientific community at-large, and from major projects developing new recombinase lines and characterizing recombinase expression and specificity patterns. Searching the CrePortal by recombinase activity or specific recombinase gene …

Mouse Genome Informatics (Mgi): Latest News From Mgd And Gxd., Martin Ringwald, Joel E Richardson, Richard M. Baldarelli, Judith A. Blake, James A. Kadin, Cynthia Smith, Carol J Bult

Faculty Research 2022

The Mouse Genome Informatics (MGI) database system combines multiple expertly curated community data resources into a shared knowledge management ecosystem united by common metadata annotation standards. MGI's mission is to facilitate the use of the mouse as an experimental model for understanding the genetic and genomic basis of human health and disease. MGI is the authoritative source for mouse gene, allele, and strain nomenclature and is the primary source of mouse phenotype annotations, functional annotations, developmental gene expression information, and annotations of mouse models with human diseases. MGI maintains mouse anatomy and phenotype ontologies and contributes to the development of …

Species Invasion Vs. Abundance In The Northern And Southern Regions Of Lake Powell, Amanda Lebarge, Mark Belk

Library/Life Sciences Undergraduate Poster Competition 2022

Lake Powell is a dynamic system, evidenced by its yearly fluctuations in water level. In the last 20 years, this reservoir has experienced invasions from two different invasive species: the gizzard shard, and quagga mussel. Due to the unique nature of Lake Powell, our research seeks to understand if there were catastrophic effects of these invasions on fish biomass and abundance patterns, and do these impacts vary based on region? We hypothesize that both species will have a major impact in all regions on the native species in Lake Powell; however, the southern region will be more catastrophic.

A Ketogenic Diet Enhances Hippocampal Mitochondrial Efficiency, Cali E. Warren, Erin R. Saito, Benjamin T. Bikman

Library/Life Sciences Undergraduate Poster Competition 2022

Mitochondrial dysfunction and cognitive impairment are common symptoms in many neurologic disorders, as well as in nonpathological aging. Ketones have been suggested as therapeutic for their relevance in epilepsy and other neurodegenerative diseases and psychiatric disorders such as Alzheimer’s and Parkinson’s disease, schizophrenia, and major depressive disorder.

Timber Talk, Vol. 60, No. 1, March 2022

Timber Talk: Nebraska Forest Industry Newsletter

Lumber market reports

Hardwood lumber prices

Log matchmaking program launch, Heather Kingery

Save the date! – “Managing CarbonThrough Healthy Forests in theSouthern Great Plains”

Upcoming NFS cedar managementand utilization workshop series

Timber sales

Trading post

Backcountry Equestrian Camping Online Course, Gillian Larson

Agricultural Education: Graduate Internship Reports

This AGED 539 project describes the creation of a Backcountry Equestrian Camping online course, including the goals of the course, an outline of the topics, and a summary description of the module contents. The course itself consists of material designed to provide participants with the necessary information to successfully travel and camp overnight on backcountry trips with a horse or mule, which is presented in a series of modules that include videos, written material, and downloadable PDFs. There is also an evaluation and acknowledgments segment.

Isolation Of The Mustard Napin Protein Allergen Sin A 1 And Characterisation Of Its Antifungal Activity, Giulia Mignone, Laila N. Shwaiki, Elke K. Arendt, Aidan Coffey

Department of Biological Sciences Publications

Proteins and peptides belonging to the plant immune system can possess natural antibacterial, antifungal and antiviral properties. Due to their broad range of activity and stability, they represent promising novel alternatives to commonly used antifungal agents to fight the emergence of resistant strains. An isolation protocol was optimised to target proteins found in plants’ defence system, and it was applied to white mustard (Brassica hirta) seeds. Firstly, a ∼14 kDa protein with activity against S. cerevisiae was extracted and purified; secondly, the protein was identified as the mustard Napin protein named Allergen Sin a 1. Napin is the name given …

Peak Chlorophyll A Concentrations In The Lower Mississippi River From 1997 To 2018, R. Eugene Turner, Charles S. Milan, Erick M. Swenson, James M. Lee

Faculty Publications

Large and turbid rivers have varying temperatures, light conditions, nutrient availability, and nutrient ratios that may affect phytoplankton communities and occur within a changing world of point and nonpoint source nutrient loadings. We investigated how these physical and chemical factors affect Chlorophyll a (Chl a) concentrations in the Mississippi River, the largest river in North America, by sampling 878 times from February 1997 to December 2018 near its terminus at Baton Rouge, Louisiana. We hypothesized that nutrient concentrations and ratios were significant factors limiting phytoplankton biomass accumulations in this turbid river. The Chl a concentrations were in the "poor" water …

Drivers Of Flight Performance Of California Condors (Gymnogyps Californianus), Sophie R. Bonner, Sharon A. Poessel, Joseph C. Brandt, Molly T. Astell, James R. Belthoff, Todd E. Katzner

Biology Faculty Publications and Presentations

Flight behavior of soaring birds depends on a complex array of physiological, social, demographic, and environmental factors. California Condors (Gymnogyps californianus) rely on thermal and orographic updrafts to subsidize extended bouts of soaring flight, and their soaring flight performance is expected to vary in response to environmental variation and, potentially, with experience. We collected 6298 flight tracks described by high-frequency GPS telemetry data from five birds ranging in age from 1 to 19 yr old and followed over 32 d in summer 2016. Using these data, we tested the hypothesis that climb rate, an indicator of flight performance, …

Untangling The Placentome Gene Network Of Beef Heifers In Early Gestation, Wellison J.S. Diniz, Lawrence P. Reynolds, Alison K. Ward, Pawel P. Borowicz, Kevin K. Sedivec, Kacie L. Mccarthy, Cierrah J. Kassetas, Friederike Baumgaertner, James D. Kirsch, Sheri T. Dorsam, Tammi L. Neville, J. Chris Forcherio, Ronald R. Scott, Joel S. Caton, Carl R. Dahlen

Department of Animal Science: Faculty Publications

The cotyledon and caruncle tissues provide a functional bridge between the fetus and the dam. However, the relationship between these tissues and the transcriptomic profile that underlies the tissue functions remains elusive. Herein we investigate the expression profile of cotyledon and caruncle from nulliparous beef heifers carrying female fetuses at day 83 of pregnancy to identify changes occurring across tissues that contribute to placental function and their tissue-specific roles. We identified 2654 differentially expressed genes [padj ≤ 0.05, abs(log2FC) ≥ 1], including nutrient transporters and paternally imprinted genes. We found key regulators of tissue function and differentiation, including FOXO4, GATA2, …

The Coastal Monitor: Vol. 8 No. 4, John Tanacredi Ph.D.

The Coastal Monitor

The original five acre of land portion of the historic Blue Points Oyster Company is located at the southern end of Atlantic Ave in West Sayville, Islip Town, Suffolk County, New York on the shore of Great South Bay. The Center for Environmental Research and Coastal Oceans Monitoring (CERCOM) is the science field station serving Molloy College’s BCES programs in Earth & Environmental Sciences and Biology. Our mission is to provide unique hands-on educational opportunities in the physical and life sciences, in collaboration with a host of Federal, State, and local and NGO groups, to bolster students’ career path. Great …

Density Dependent Refueling Of Migratory Songbirds During Stopover Within An Urbanizing Coastal Landscape, Emily B. Cohen, Jill M. Lafleur, Frank R. Moore

Faculty Publications

Refueling performance is the primary currency of a successful migration as birds must maintain energy stores to achieve an optimal travel schedule. Migrating birds can anticipate heightened energy demand, not to mention increased uncertainty that energy demands will be satisfied, especially within an urbanizing landscape following long-distance flights. We tested the expectation that refueling performance of songbirds is reduced as densities increase at stopover sites in an urbanizing coastline of the Gulf of Mexico. We measured the density of migrating birds, their refueling performance, and arthropod abundance in two large tracts of contiguous forest paired with two small isolated patches …

Current Water Quality Guidelines Across North America And Europe Do Not Protect Lakes From Salinization, Matthew Schuler

Department of Biology Faculty Scholarship and Creative Works

Human-induced salinization caused by the use of road deicing salts, agricultural practices, mining operations, and climate change is a major threat to the biodiversity and functioning of freshwater ecosystems. Yet, it is unclear if freshwater ecosystems are protected from salinization by current water quality guidelines. Leveraging an experimental network of land-based and in-lake mesocosms across North America and Europe, we tested how salinization—indicated as elevated chloride (Cl²) concentration—will affect lake food webs and if two of the lowest Cl² thresholds found globally are sufficient to protect these food webs. Our results indicated that salinization will cause substantial …

Analysis Of Livestock Movements And The Benefits And Costs Of Livestock Standstills In Australia As Part Of The Response To Foot-And-Mouth Disease, Ann Seitzinger, Graeme Garner, Richard Bradhurst, Walter Okelo, Michelle Rodan

Animal production and livestock published reports

This project involved analysis of livestock movements and used epidemiological modelling and cost analysis to estimate the benefits and costs of implementing livestock standstills in response to a foot-and-mouth disease (FMD) outbreak in Australia. This was done in four steps: 1) assessing the extent of livestock movement, 2) conducting a cross sectional analysis of the impact (reduction of outbreak size and economic cost) of implementing a national standstill/movement control, 3) use of case specific studies to estimate impact of state/territory level implementation of standstill, and 4) cost analysis and comparison of national standstill with the state/jurisdictional level and risk-based approach …