Life Sciences Commons^™

Genetic Variation Of The Mitochondrial Dna Control Region Across Plains Bison Herds In Usa And Canada, Gaimi Davies, Blake Mccann, Lee Jones, Stefano Liccioli, Maria Cecilia Penedo, Igor V. Ovtchinnikov

Biology Faculty Publications

Once numbering in the tens of millions, bison (Bison bison) have faced a broad range of challenges over the past century, including genetic impacts from the population bottleneck in the 1800s, and significant loss and fragmentation of habitat resulting in little opportunity for population growth on remaining small, geographically isolated reserves. To identify best practices for bison stewardship against this backdrop, managers must understand the genetic composition of existing conservation herds. This study characterized 14 plains bison (Bison bison bison) herds managed by the U.S. Department of Interior and Parks Canada Agency based on complete mtDNA …

Variants Within Genes Edil3 And Adgrb3 Are Associated With Divergent Fecal Egg Counts In Katahdin Sheep At Weaning, Gabrielle M. Becker, Joan M. Burke, Ronald M. Lewis, James E. Miller, James L.M. Morgan, Benjamin D. Rosen, Curtis P. Van Tassell, David R. Notter, Brenda M. Murdoch

Department of Animal Science: Faculty Publications

Gastrointestinal nematodes (GIN) pose a severe threat to sheep production worldwide. Anthelmintic drug resistance coupled with growing concern regarding potential environmental effects of drug use have demonstrated the necessity of implementing other methods of GIN control. The aim of this study was to test for genetic variants associated with resistance or susceptibility to GIN in Katahdin sheep to improve the current understanding of the genetic mechanisms responsible for host response to GIN. Linear regression and casecontrol genome-wide association studies were conducted with high-density genotype data and cube-root transformed weaning fecal egg counts (tFEC) of 583 Katahdin sheep. The casecontrol GWAS …

Ability Of Lifeguards To Detect Submerged Manikins In Public Swimming Pool Environments, Élie Vignac, Pascal Lebihain, Brice Guignard, Natacha Heutte, Loic Le Minor, Bastien Soulé

International Journal of Aquatic Research and Education

To prevent drownings in public swimming pools (PSP), French legislation requires constant surveillance by state-certified lifeguards. While previous research showed that surveillance was not always effective, this article focuses on efficiency of surveillance when it is effective. We evaluated the ability of 4 volunteer professional lifeguards to detect a submerged manikin under controlled conditions. One hundred and eight (108) tests were carried out in 2 PSP. Four variables were controlled (i.e., distance, depth, surveillance station, attendance). Our results showed that rapid drowning detection was not exclusively linked to the individual detection capabilities of a lifeguard, but rather it emerged from …

Towards Economic Growth And Development: The Role Of Development Finance Institutions In Fostering Foreign Direct Investment In Sub-Saharan Africa, Carmen Cagiza

Doctoral Projects

This dissertation contributes to the debate on economic development in developing countries through the analyses of four related strands of literature – the FDI and growth literature, the literature on finance and development, the DFI and growth literature, aid, institutions and economic development. The present research seeks to contribute to the debate on the effect of DFIs on FDI and consequently on economic development in developing economies to bridge the existing funding gap and thus ensure these economies achieve the global shared vision of sustainable development of the United Nations 2030 agenda. We acknowledge that development is triggered by economic …

Plants Used By Nyamwezi Traditional Health Practitioners To Remedy Sexually Transmitted Infections In Sikonge, Tanzania, David S. Kacholi, Halima Amir

Journal of Humanities and Social Sciences

This study aims to document medicinal plants used by Nyamwezi traditional health practitioners (NTHPs) in managing sexually transmitted infections (STIs) in Sikonge District. The data on medicinal plants were collected using a semi-structured questionnaire. A total of 23 NTHPs were interviewed. The findings revealed that 28 medicinal plants, belonging to 16 families and 25 genera, are used for the management of STIs in Sikonge. Most species belonged to family Fabaceae (17.9%), Apocynaceae, Combretaceae and Euphorbiaceae (10.7% each), and Olacaceae and Rutaceae (7.1% each). Out of the recorded plants, 45.7% are used to manage gonorrhoea, 25.7% syphilis, 17.1% vaginal candidiasis, 8.6% …

Application Of Pheromone Is Potential Ecological Approach In Management Of Tuta Absoluta In Tomatoes: The Case Of Ruaha River Basin In Iringa, Tanzania, Theonest Kombe, Nicodemus D. Matojo, Fikira Kimbokota

Journal of Humanities and Social Sciences

Tomato leaf miner, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae), is currently considered to be one of the most destructive insect pests of tomatoes worldwide. The present study was conducted in three study sites along Ruaha River Basin, Iringa, Tanzania, to assess community awareness about T. absoluta infestation and its management. The study also evaluated the susceptibility of three tomato varieties against T. absoluta in a greenhouse setting, as well as the effect of colours of traps and doses of pheromone in attracting T. absoluta in a field environment. The field survey revealed that 97% of the respondents were aware of the …

Nonhistone Lysine Methylation As A Protein Degradation Signal, Nicholas A. Lehning, Brad E. Morrison

Biology Faculty Publications and Presentations

Protein degradation is a fundamental feature of cellular life, and malfunction of this process is implicated in human disease. Ubiquitin tagging is the best characterized mechanism of targeting a protein for degradation; however, there are a growing number of distinct mechanisms which have also been identified that carry out this essential function. For example, covalent tagging of proteins with sequestosome-1 targets them for selective autophagy. Degradation signals are not exclusively polypeptides such as ubiquitin, NEDD8, and sequestosome-1. Phosphorylation, acetylation, and methylation are small covalent additions that can also direct protein degradation. The diversity of substrate sequences and overlap with other …

Determining Pairwise Interactions To Predict Species Interactions In A Complex Community Of Gut Bacteria., Makenzie Maroney

Honors Program: Senior Projects (Public)

The human gastrointestinal (GI) tract houses a diverse and expansive microbial community known as the microbiota. The relationship between the host and the microbiota is considered to be mutualistic, as trillions of bacteria that reside in the hospitable GI tract can assist in essential host functions, including contributing to metabolism and immunity against disease. An important subpopulation of the GI microbiota is the mucin-associated biofilm that is comprised of a dense layer of bacteria that forms on the GI mucin layer. The mucin layer provides an alternative niche to the GI lumen; the glycans of the mucin and the subsequent …

Comparison Of Transcervical Insemination Versus Surgical Insemination Methods In Dogs At A Veterinary Clinic In Lincoln, Nebraska, Lauren Ahlers

Honors Program: Senior Projects (Public)

Artificial insemination paved the way for many advancements in reproductive technology. Two common artificial insemination methods recommended for use with frozen semen are transcervical insemination and surgical insemination. To better understand the conception rates of dogs for each method, data was collected from Hillcrest Animal Clinic. The data suggested that neither transcervical insemination nor surgical insemination was significantly better than the other. 50% of the dogs conceived when inseminated using the transcervical method, and 54.5% of the dogs conceived when inseminated using the surgical method. Based on the results, more data needs to be collected on both insemination procedures to …

Developing Activities On Uncharismatic Animals Found At Omaha's Henry Doorly Zoo And Aquarium, Justin Hultquist

Honors Program: Senior Projects (Public)

The Education Department at Omaha’s Henry Doorly Zoo and Aquarium has a number of educational activities based on charismatic species found there. I wished to develop activities the department may use for less charismatic or misunderstood species at the zoo. I began by surveying the exhibits at the zoo and taking note of what species or groups didn’t receive as much visitor engagement, or what comments were made on species that were incorrect. I then began to brainstorm and narrow down potential species that I could develop an educational activity around. As I began to develop and create activities, a …

Measurable Residual Disease Response And Prognosis In Treatment-Naïve Acute Myeloid Leukemia With Venetoclax And Azacitidine, Keith W Pratz, Brian A Jonas, Vinod Pullarkat, Christian Recher, Andre C Schuh, Michael J Thirman, Jacqueline S Garcia, Courtney D Dinardo, Vladimir Vorobyev, Nicola S Fracchiolla, Su-Peng Yeh, Jun Ho Jang, Muhit Ozcan, Kazuhito Yamamoto, Arpad Illes, Ying Zhou, Monique Dail, Brenda Chyla, Jalaja Potluri, Hartmut Döhner

Faculty, Staff and Student Publications

PURPOSE: There is limited evidence on the clinical utility of monitoring measurable residual disease (MRD) in patients with acute myeloid leukemia treated with lower-intensity therapy. Herein, we explored the outcomes of patients treated with venetoclax and azacitidine who achieved composite complete remission (CRc; complete remission + complete remission with incomplete hematologic recovery) and MRD < 10

METHODS: The patients included in this report were treated with venetoclax and azacitidine. Bone marrow aspirate samples for multiparametric flow cytometry assessments were collected for central analysis at baseline, end of cycle 1, and every three cycles thereafter. MRD-negative response was defined as < 1 residual blast per 1,000 leukocytes (< 10

RESULTS: One hundred …

Blood-Based Biomarker Panel For Personalized Lung Cancer Risk Assessment, Johannes F Fahrmann, Tracey Marsh, Ehsan Irajizad, Nikul Patel, Eunice Murage, Jody Vykoukal, Jennifer B Dennison, Kim-Anh Do, Edwin Ostrin, Margaret R Spitz, Stephen Lam, Sanjay Shete, Rafael Meza, Martin C Tammemägi, Ziding Feng, Samir M Hanash

Faculty, Staff and Student Publications

Purpose: To investigate whether a panel of circulating protein biomarkers would improve risk assessment for lung cancer screening in combination with a risk model on the basis of participant characteristics.

Methods: A blinded validation study was performed using prostate lung colorectal ovarian (PLCO) Cancer Screening Trial data and biospecimens to evaluate the performance of a four-marker protein panel (4MP) consisting of the precursor form of surfactant protein B, cancer antigen 125, carcinoembryonic antigen, and cytokeratin-19 fragment in combination with a lung cancer risk prediction model (PLCOm2012) compared with current US Preventive Services Task Force (USPSTF) screening criteria. The 4MP was …

Role Of Bmi1 In Acute Lung Injury, María Helena Hernández-Cuervo

USF Tampa Graduate Theses and Dissertations

Acute Lung Injury (ALI) is a set of signs and symptoms that lead to acute hypoxemic respiratory failure characterized by bilateral pulmonary infiltrates not attributed to cardiogenic origin. It is caused by a massive innate immune response, with the migration of white blood cells (neutrophils and macrophages principally) and a cytokine storm, followed by alterations in mitochondrial function, increase in reactive oxygen species production, and oxidative stress that in turn induces more mitochondrial damage. Several studies have shown that mitochondrial alterations are key events in the mechanism of ALI and reducing mitochondrial dysfunction could be a possible target in the …

Cell-Free Dna Methylation Signatures In Cancer Detection And Classification, Jinyong Huang

USF Tampa Graduate Theses and Dissertations

Early detection of cancer is believed as one of the best solutions to improve the therapeutic outcomes and overall survival of cancer patients. Analysis of circulating nucleic acids in bodily fluids, referred to as “liquid biopsies”, is rapidly gaining prominence for this purpose. Cell-free DNA (cfDNA) methylation has emerged as a promising biomarker for early cancer detection, tumor type classification, and treatment response monitoring. Currently, most cfDNA methylation profiling technologies are based on bisulfite conversion, while enrichment-based methods such as cfMeDIP-seq are beginning to show potential. To expand the use of enrichment-based methods in cfDNA methylation profiling, here, we report …

Academic Information Seeking Behaviour Of Undergraduate Students Of History And International Studies In Nigerian Federal Universities, Chidi Amaechi Ph.D, Joseph Oluchukwu Wogu Ph.D

Library Philosophy and Practice (e-journal)

The study aims to understand the academic information-seeking behaviour of undergraduate students of history and international studies in Nigerian federal universities. A descriptive survey research design was adopted for the study. The study respondents were South-East federal universities undergraduate students of 100-400 levels in South-East, Nigeria's history and international studies department. The study was borne out of the numerous behavioural patterns exhibited by undergraduate students, history, and international studies undergraduate students inclusive for them to excel in their academic pursuits. 110 undergraduate students of history and international studies were sampled for the study. In determining the sample size, a random …

Understanding Common Perceptions Of The Drylands, C. Bedelian, D. Pertaub, F. Ngarachu, C. Hesse, S. Krätli, J. Obando, C. Shisanya, J. Maraigua

IGC Proceedings (1977-2023)

Drylands occupy over 40% of the earth’s surface and are home to more than 2 billion people. Drylands are key to the food and nutritional security of the planet and vital to the economies and livelihoods of dryland inhabitants. Yet, drylands are commonly perceived as unproductive, economically inefficient and marginal lands where small-scale farmers and pastoralists practice environmentally degrading activities. Driven by inadequate understanding and misconceptions of the drylands, policy-makers devise inappropriate policies and interventions. The BRECcIA project developed an online Drylands Perceptions Survey to understand the perceptions of researchers, practitioners and policy makers working in the drylands of Kenya, …

Relationships Between Biodiversity And Production In Grasslands At Local And Regional Scales, A. Hector, M. Loreau

IGC Proceedings (1977-2023)

Key points

1. Experimental manipulations of plant species diversity in unfertilised prairies and meadows has revealed that increasing diversity often leads to increased productivity (range of observed relationships varies from flat to log-linearly positive); driven by a combination of facilitation, niche-partitioning and sampling/selection effects.

2. The longer-term effects of diversity on ecosystem stability are not as clear and in need of further work.

3. Recent applied work, and a new review of the grassland literature, both show the potential for biodiversity to increase productivity under realistic field conditions.

4. The longer-term feedback of grazers on biodiversity gradients is unknown, and …

Methane And Nitrous Oxide Emissions From Grazed Grasslands, Harry Clark, C. Pinares-Patiño, C. De Klein

IGC Proceedings (1977-2023)

Key points

1. Emissions of methane (CH₄) and nitrous oxide (N₂O) from grasslands make a substantial contribution to total agricultural emissions of these two gases.

2. At present practical mitigation options that relate to grazing ruminants and grazed pastures are limited.

3. Research into agricultural greenhouse gas emissions is of low priority in most developed countries.

4. Direct manipulation of the rumen ecosystem provides the best opportunity for large reductions in CH₄ in the long term.

5. Reducing the amount of nitrogen (N) excreted by grazing animals is a priority in N₂O research, …

Mesobuthus Zarudnyi Sp. N. From Azerbaijan (Scorpiones: Buthidae), Nizami E. Novruzov, František Kovařík, Victor Fet

Euscorpius

A new species Mesobuthus zarudnyi sp. n. is described from Azerbaijan, fully illustrated with color photos. We compare the new species with two other species, M. eupeus (C. L. Koch, 1839) and M. persicus (Pocock, 1899), both found also in Azerbaijan.

Phenotypic Evaluation Of Energycane Varieties For Bioenergy, Wyatt Eason, D. M. Hollowell, Anna Hale, Jesse Ira Morrison, Brian Baldwin

IGC Proceedings (1977-2023)

The need for renewable and carbon-neutral energy is growing as fossil fuel supplies decrease and concerns of climate change increase. C₄ grasses are among the most efficient carbon accumulators. Sugarcane (Saccharum officinarum) is a renewable bioenergy crop with low inputs and high yields, but it is limited to tropical and sub-tropical climates. A close relative, Saccharum spontaneum, readily hybridizes with S. officinarum. S. spontaneum lends cold tolerance and higher yields to the hybrid progeny, called energycane. The Sugarcane Breeding Unit (USDA, Houma, Louisiana, USA) selected twenty-six genotypes for testing at Mississippi State University to determine production …

Effect Of Winter Canola Cultivar On Seed Yield, Oil, And Protein Content, Kyle D. Mcgeary, Jason P. De Koff, Bharat Pokharel, Richard Link, Priya Saini, Taqdeer Gill

Agricultural and Environmental Sciences Faculty Research

Winter canola (Brassica napus L.) production has increased in the United States over the past several decades; however, there is little research in the southeastern United States on its agronomic production and growth characteristics under different nitrogen (N) fertilizer rates. The objectives of this study were to determine the effects of N rates on winter mortality, yield, oil and protein content, and seedpod shatter resistance across cultivars. Canola was grown in a randomized split complete block design with four replicates under five different N rates (0, 56, 112, 168, and 224 kg N ha−1) with four different cultivars (Hekip, Inspiration, …

Smokejumper Obituary: Wiltzen, Harris Anthony (Missoula 1948), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Bumble Bees Exhibit Body Size Clines Across An Urban Gradient Despite Low Genetic Differentiation, Matthew W. Austin, Amber D. Tripodi, James P. Strange, Aimee S. Dunlap

Educator Preparation & Leadership Faculty Works

Environmental heterogeneity resulting from human-modified landscapes can increase intraspecific trait variation. However, less known is whether such phenotypic variation is driven by plastic or adaptive responses to local environments. Here, we study five bumble bee (Apidae: Bombus) species across an urban gradient in the greater Saint Louis, Missouri region in the North American Midwest and ask: (1) Can urban environments induce intraspecific spatial structuring of body size, an ecologically consequential functional trait? And, if so, (2) is this body size structure the result of plasticity or adaptation? We additionally estimate genetic diversity, inbreeding, and colony density of these species—three …

Climate Effects On Black Spruce And Trembling Aspen Productivity In Natural Origin Mixed Stands, Mahadev Sharma

Aspen Bibliography

Forest managers need site productivity estimates for tree species growing in mixed stands. Models developed in the past are generally for pure stands and don’t factor in the effects of climate change on site productivity. Therefore, site index (SI) models were developed for black spruce (Picea mariana Mill. B.S.P.) and trembling aspen (Populus tremuloides Michx.) trees grown in natural origin mixed stands. For this, 186 trees (93 black spruce and trembling aspen each) were sampled from 31 even-aged natural mixed stands (sites) (3 trees/species/site) across Ontario, Canada. Stand height growth models were developed by incorporating climate variables during …

Elucidating Mechanisms Of Genetic Cross-Disease Associations At The Procr Vascular Disease Locus, David Stacey, Lingyan Chen, Paulina J Stanczyk, Joanna M M Howson, Amy M Mason, Stephen Burgess, Stephen Macdonald, Jonathan Langdown, Harriett Mckinney, Kate Downes, Neda Farahi, James E Peters, Saonli Basu, James S Pankow, Weihong Tang, Nathan Pankratz, Maria Sabater-Lleal, Paul S De Vries, Nicholas L Smith, Amy D Gelinas, Daniel J Schneider, Nebojsa Janjic, Nilesh J Samani, Shu Ye, Charlotte Summers, Edwin R Chilvers, John Danesh, Dirk S Paul

Faculty, Staff and Student Publications

Many individual genetic risk loci have been associated with multiple common human diseases. However, the molecular basis of this pleiotropy often remains unclear. We present an integrative approach to reveal the molecular mechanism underlying the PROCR locus, associated with lower coronary artery disease (CAD) risk but higher venous thromboembolism (VTE) risk. We identify PROCR-p.Ser219Gly as the likely causal variant at the locus and protein C as a causal factor. Using genetic analyses, human recall-by-genotype and in vitro experimentation, we demonstrate that PROCR-219Gly increases plasma levels of (activated) protein C through endothelial protein C receptor (EPCR) ectodomain shedding in endothelial cells, …

Drainage Law Proposal, J. David Aiken

Cornhusker Economics

Legislative Bill 806 would significantly change Nebraska drainage law and bring long-overdue reform to Nebraska water law. This newsletter gives a quick overview of LB 806 and how it would impact the resolution of drainage disputes in Nebraska.

Optimal Iron Content In Ready-To-Use Therapeutic Foods For The Treatment Of Severe Acute Malnutrition In The Community Settings: A Protocol For The Systematic Review And Meta-Analysis, Aamer Imdad, Melissa François, Fanny F. Chen, Abigail Smith, Olivia Tsistinas, Emily Tanner Smith, Jai K. Das, Zulfiqar Ahmed Bhutta

Department of Paediatrics and Child Health

Introduction: The current standard of care for children with severe acute malnutrition (SAM) involves using ready-to-use therapeutic food (RUTF) to promote growth; however, the precise formulation to achieve optimal recovery remains unclear. Emerging research suggests that alternative RUTF formulations may be more effective in correcting SAM-related complications such as anaemia and iron deficiency. This systematic review commissioned by the WHO aims to synthesise the most recent research on the iron content in RUTF and related products in the community-based treatment of uncomplicated severe malnutrition in children aged 6 months and older.
Methods and analysis: We will search multiple electronic databases. …

Impact Of New Technologies On Weed Control In Louisiana Rice Production, David C. Walker

LSU Doctoral Dissertations

Field studies were conducted in 2018-2021 at the LSU Agricultural Center’s H.R. Caffey Rice Research Station (RRS) near Crowley, LA, and the Dean Lee Research and Extension Center (DLREC) near Alexandria, LA to evaluate off-target florpyrauxifen movement on soybean. Soybean was treated with florpyrauxifen at the V4-V5 or R1-R2 growth stages. Soybean injury was evaluated at 1, 7, 14, and 28 days after treatment (DAT) and soybean plant height (cm) was recorded at 7, 14, and 28 DAT. At soybean maturity, yield and individual yield components were subjected to regression analysis to describe the relationship between florpyrauxifen rate and soybean …

Quantitative Assessment Of The Trophic Ecology Of The Oceanic Ctenophore, Bolinopsis Infundibulum, In Monterey Bay, California, Victoria C. Scriven

USF Tampa Graduate Theses and Dissertations

Bolinopsis infundibulum is a wide-ranging, ubiquitous ctenophore whose fragile nature makes the collection of specimens and quantification of key predator-prey activities in controlled laboratory experiments, challenging. Thus, in situ methods often represent the best means for data collection. However, while present in surface waters, these animals can also be abundant at depths well beyond those attainable by divers. As a result, very little empirical data exist over the depth range of their natural habitats which limits our ability to assess key predator-prey interactions needed to assess their ecological role in midwater food webs. Working in Monterey Bay, California, remotely operated …

Grazing Land Contributions To Carbon Sequestration, Ronald F. Follett, G. E. Schuman

IGC Proceedings (1977-2023)

Key points

1. Grazing management can be used to increase soil organic carbon sequestration.

2. Grazing land soils contain large amounts of carbon with depth, and can store it for centuries.

3. Policies to encourage terrestrial carbon sequestration through conservation and good management of grazing lands are critical for many countries and the world.