Life Sciences Commons^™

Utilizing Pharmacology To Target Transcription Factors Involved With Cancer Onset And Development, Tristan D. Sanders

Mountaineer Undergraduate Research Review

Transcription factors (TFs) are a vital part of every living organism on earth, as they allow for the correct genes to be expressed while much of the genome is never used. They can fall victim to mutations or manipulations that lead to the deregulation of many genes within a cell. If specific genes are over/under-expressed, a cell may become cancerous and begin replicating into a tumor. It has been demonstrated that common TFs associated with cancer can be targeted using small molecule drugs, and a popular target of these drugs is the DNA binding site on the TF along with …

Computational Investigations Into Binding Dynamics Of Tau Protein Antibodies: Using Machine Learning And Biophysical Models To Build A Better Reality, Katherine Lee

University Scholar Projects

Misregulation of post-translational modifications of microtubule-associated protein tau is implicated in several neurodegenerative diseases including Alzheimer’s disease. Hyperphosphorylation of tau promotes aggregation of tau monomers into filaments which are common in tau-associated pathologies. Therefore, tau is a promising target for therapeutics and diagnostics. Recently, high-affinity, high-specificity single-chain variable fragment (scFv) antibodies against pThr-231 tau were generated and the most promising variant (scFv 3.24) displayed 20-fold increased binding affinity to pThr-231 tau compared to the wild-type. The scFv 3.24 variant contained five point mutations, and intriguingly none were in the tau binding site. The increased affinity was hypothesized to occur due …

A New Genus For Stromatium Chilensis Cerda, 1968 (Coleoptera: Cerambycidae: Cerambycinae: Hesperophanini) From Chile, José Mondaca, Marcos Beéche

Insecta Mundi

Stromatium chilensis Cerda, 1968, an endemic species from Chile, is placed in Malcho Mondaca and Beéche, new genus (Coleoptera: Cerambycidae: Cerambycinae: Hesperophanini). The new genus is compared with Stromatium Audinet-Serville, included in a previous key to Hesperophanini, and a diagnosis and illustrations of the species are provided.

Stromatium chilensis Cerda, 1968, especie endémica de Chile, es ubicada en Malcho Mondaca y Beéche, nuevo género (Coleoptera: Cerambycidae: Cerambycinae: Hesperophanini). El nuevo género es comparado con Stromatium Audinet-Serville, e incluido en la clave anterior de Hesperophanini. Se aporta una diagnosis e ilustraciones de la especie.

The genus Stromatium Audinet-Serville, 1834, considered …

Descripción De Dos Especies Nuevas De Mesoplia Lepeletier (Hymenoptera: Apoidea: Apidae) Para Cuba Y Las Bahamas, Con Notas Sobre Taxonomía Y Distribución Del Género En Las Antillas, Julio A. Genaro, Dayron Breto

Insecta Mundi

Se describen e ilustran dos especies nuevas de Mesoplia Lepeletier (Hymenoptera: Apoidea: Api­dae) para las Antillas: M. bahamensis Genaro y Breto, nueva especie, conocida solamente del cayo Castaway, Las Bahamas y M. cubensis Genaro y Breto, nueva especie, bien distribuida en toda Cuba e Isla de La Juven­tud. Mesoplia cubensis nueva especie fue una especie multivoltina, que se relacionó con el área de nidos de especies de Centris Fabricius (Apidae), su posible hospedero. Se presentan las características taxonómicas diferenciales y la distribución de las otras cuatro especies antillanas conocidas: Mesoplia sp., no descrita, M. azurea (Lepeletier y Serville), …

Additional New And Unusual Host Records For Western Hemisphere Spider Wasps (Hymenoptera: Pompilidae), Frank E. Kurczewski, Rick C. West, Cecilia Waichert, James P. Pitts

Insecta Mundi

We present 112 new and unusual host records for 63 species and subspecies of Pompilidae (Hy­menoptera) from the Western Hemisphere in modified taxonomic order according to the Synoptic Catalog of Hymenoptera (Krombein 1979). These records supplement those reported in a recent study by Kurcze­wski et al. (2020b). New and atypical genus and species host records are given for the genera Calopompilus Ashmead, Herbstellus Wahis, Pepsis Fabricius, Priocnessus Banks, Entypus Dahlbom, Pompilocalus Roig-Alsina, Sphictostethus Kohl, Priocnemis Schiødte, Caliadurgus Fabricius, Epipompilus Kohl, Auplopus Spinola, Ageniella Banks, Eragenia Banks, Agenioideus Ashmead, Sericopompilus Howard, Poecilopompilus Ashmead, Tachypompilus Ashmead, and Priochilus (Fabricius). New host …

A New Species And New Records For Two Other Exotic Species Of Dirrhagofarsus Fleutiaux, 1935 (Coleoptera: Eucnemidae: Melasinae: Dirhagini) In The United States, Robert L. Otto

Insecta Mundi

New records for a new species and other exotic Dirrhagofarsus Fleutiaux (Coleoptera: Eucnemidae: Melasinae: Dirhagini) species are reported from throughout much of the northeastern and southern areas of the United States. Dirrhagofarsus brevis, new species, is hereby described in this study. Two other exotic spe­cies, Dirrhagofarsus modestus (Fleutiaux) and Dirrhagofarsus unicolor (Hisamatsu), new country records, are redescribed and diagnosed as they were compared with other Dirrhagofarsus species present in the Nearctic region. All Dirrhagofarsus species in this study are imaged, highlighting essential character states to facilitate better diagnosis in conjunction to the new identification key provided in …

New Species, Synonymy, New Records, And Taxonomic Notes In American Cerambycidae (Coleoptera), Juan Pablo Botero, Antonio Santos-Silva

Insecta Mundi

Cotyclytus parumnotatus (Zajciw, 1963) (Coleoptera: Cerambycidae: Cerambycinae: Clytini) is revalidated and a neotype is designated. Anatinomma Bates, 1892 (Cerambycinae: Hesperophanini) is reported as a neuter gender and two species-group names are corrected: A. brevicorne Fisher, 1944 and A. in­sulare Chemsak and Linsley, 1964; the latter is newly recorded from Honduras. Pachymerola vitticollis Bates, 1892 (Cerambycinae: Hyboderini) is recorded for the first time in the Mexican state of Jalisco, and chromatic variation is reported. Smodicum dinellii Bruch, 1911 (Cerambycinae: Smodicini) is recorded from Bolivia; and Corcovado bezarki Martins and Galileo, 2008 (Lamiinae: Hemilophini) is recorded from Belize. Parhip­popsis …

Evaluating The Microbial Quality And Use Of Antimicrobials In Raw Pet Foods, Leslie Pearl Cancio

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Raw meat-based diets (RMBDs) are emerging pet foods that pose food safety risks because of the potential presence of pathogens that could cause illness to humans. In this research, the microbial quality of select RMBD products sold by pet food companies online and the use of chemical antimicrobials to reduce the microbial load in chicken liver, a common RMBD ingredient, were evaluated.

Ground meat blends and livers from four animal species (beef, pork, chicken, turkey) were purchased from four online companies that delivers directly to consumers through parcel businesses. Products were procured at three different times during one year and …

The Role Of Free Radicals In The Activation Of Epidermal Growth Factor Receptors In Murine Microglial Cells, Eliana John

Honors Theses

Regulation of cellular processes is important for proper functioning. Environmental factors, including stress, can interfere with cellular regulation. One of the diseases caused by cellular regulation disturbance is cancer and mutations in EGF-related genes highly correlate with worse outcomes in cancer. The Epidermal Growth Factor (EGF) pathway is involved in the regulation of cell growth and differentiation. Phosphorylation of the receptors activates this pathway, leading to cell growth and regulation. This study examines the impact of oxidative stress on EGF pathway activation. Previous studies using breast cancer lines have indirectly shown a decrease in Epidermal Growth Factor Receptor (EGFR) activation …

Design, Synthesis, And Analysis Of Paired Coiled-Coil Peptidic Molecular Building Blocks Used For Linearly Controlled Self-Assembly Of Α-Helical Coiled-Coil Heterodimer Peptide Pairs, Jason Distefano

Chemistry Theses

Molecular building blocks are fundamental to biological synthesis and processes and have been utilized in advanced materials, drugs and drug delivery systems, and biotechnology. Proteins have been used as molecular building blocks for the construction of complex, well-ordered structures. Coiled-coil protein domains are essential subunits used for the oligomerization of protein complexes, gene expression, and structural elements of biological materials. The synthesis and assembly of proteins utilizing coiled-coil motifs are of great scientific interest due to their potential applications in disease treatment, biomechanical motors, nanoscale delivery systems, etc. However, assembling protein complexes with specific morphology is still challenging because …

The Deep-Pelagic Sergestid Shrimp Assemblage In The Gulf Of Mexico In The Vicinity Of The Deepwater Horizon Oil Spill, Erik W. Hine

All HCAS Student Capstones, Theses, and Dissertations

This thesis focuses on the geographical (near-slope vs. offshore) and temporal analyses (2011 – 2018) of the Sergestidae assemblage, the crustacean family with the fourth highest total biomass, in the Gulf of Mexico near the location of the Deepwater Horizon oil spill. The abundance and biomass of the assemblage were analyzed to determine if statistical differences were present between the near-slope and offshore environments. In addition, this study analyzed the vertical distributions of sergestid species in the epipelagic, mesopelagic, and bathypelagic zones to determine the extent of the migratory behavior of these species. Lastly, the abundance and biomass in the …

The Microbiome Characterization And Comparison Of Loggerhead (Caretta Caretta) And Green (Chelonia Mydas) Sea Turtle Eggs In Broward County, Florida, Colleen Mcmaken

All HCAS Student Capstones, Theses, and Dissertations

All seven extant species of sea turtles are classified as threatened or endangered due to natural and anthropogenic impacts. Sea turtle conservation efforts are largely dedicated to ensuring healthy nesting activity. Hatching success of sea turtle eggs can be affected by several factors including the proliferation of pathogenic microbes. However, it is unclear as to which microbes have the most impact on hatching success and how they are transmitted into the eggs. The primary aims of this study characterized and compared the bacterial communities (microbiomes) from the i) cloaca of nesting sea turtles; ii) sand within and surrounding the nests …

Feasibility Of A Hip Flexion Feedback System For Controlling Exercise Intensity And Tibia Axial Peak Accelerations During Treadmill Walking, Nuno Oliveira, Chuang-Yuan Chiu

Faculty Publications

The ability to meet high exercise intensities is limited by the increased risk of injury in some clinical populations. Previous studies have linked large tibia peak positive accelerations resulting from running to increased risk of developing lower-extremity injury. The purpose of this study is to determine the feasibility of using a hip flexion feedback system (HFFS) to meet and maintain different exercise intensities while maintaining low tibia axial accelerations. Ten healthy participants were tested on a HFFS test and an independent walking/running test to meet exercise intensities of 40% and 60% of heart rate reserve (HRR). During the HFFS test, …

Barriers To Public Health In Latino American Indigenous Communities, Wilzave Quiles Guzman

Honors Program Theses and Research Projects

This paper focuses on barriers to public health in Latino American Indigenous communities. Indigenous people throughout the world are at a public health disadvantage due to a lack of clearly defined practices within the decision-making processes to plan, evaluate, and control finances from governmental and non-governmental entities in charge of managing health services. I argue that political, social, and institutional changes are still needed to achieve health equity in Indigenous communities and that these changes should go beyond implementing a universal health care program. I must recognize improvements made by many Latino American countries like Brazil, which prepared a plan …

Analysis Of Test Anxiety In Human Anatomy And Physiology I Students At The University Of Mississippi, Anne Piazza

Honors Theses

Student anxiety, specifically test anxiety, is common hindrance to student performance in various courses including Human Anatomy and Physiology at the University of Mississippi. Through a sequence of three surveys we collected demographic information, anxiety data related to the course, and test anxiety in general We researched factors that could potentially influence student anxiety such as at what point in the semester the student is evaluated, when students feel the most stressed, outcomes on previous evaluations, and perceived outcomes of the course. We also examined what effect the anxiety has on the student such as lowered performance, lowered test scores, …

Prenatal Exposure To A Climate-Related Disaster Results In Changes Of The Placental Transcriptome And Infant Temperament, Jessica Buthmann, Dennis Huang, Patrizia Casaccia, Sarah O'Neill, Yoko Nomura

Advanced Science Research Center

Maternal stress during pregnancy exerts long-term effects on the mental well-being of the offspring. However, the long-term effect of prenatal exposure on the offspring’s mental status is only partially understood. The placenta plays a vital role in connecting the maternal side to the fetus, thereby serving as an important interface between maternal exposure and fetal development. Here, we profiled the placental transcriptome of women who were pregnant during a hurricane (Superstorm Sandy), which struck New York City in 2012. The offspring were followed longitudinally and their temperament was assessed during the first 6–12 months of age. The data identified a …

Effects Of Feeding Probiotics To Pre-Weaned Dairy Calves, Sara Tomis

Honors Scholar Theses

Pre-ruminant calves are particularly susceptible to pathological and environmental stressors that may have negative effects on their health and growth. Supplementing probiotics to this vulnerable population may have positive implications for the dairy industry, as probiotics may encourage improved growth rates and enhanced health in dairy neonates. However, there is variation in existing literature with regard to effectiveness. This study seeks to explore the impact of dietary probiotic supplement on health and growth parameters in pre-weaned dairy calves. Holstein and Jersey calves (n=30) were assigned to 1 of 2 treatment groups, receiving either 0 or 5 grams of probiotic containing …

Bumpy Stem Is An Arabidopsis Choline/Ethanolamine Kinase Required For Normal Development And Chilling Responses, Christina Rabeler, M. Chen, Nicholas J. Kaplinsky

Biology Faculty Works

Phospholipid biosynthesis is a core metabolic pathway that affects all aspects of plant growth and development. One of the earliest step in this pathway is mediated by choline/ethanolamine kinases (CEKs), enzymes in the Kennedy pathway that catalyze the synthesis of the polar head groups found on the most abundant plant phospholipids. The Arabidopsis genome encodes four CEKs. CEK1-3 have been well characterized using viable mutants while CEK4 encodes an essential gene, making it difficult to characterize its effects on plant development and responses to the environment. We have isolated an EMS-induced allele of CEK4 called bumpy stem (bst …

Halogen Bonding: A Computational Chemistry Investigation Of The Interaction Between Thyroid Hormone And Deiodinase, William Rice

Honors Theses

Halogen bonding is a noncovalent interaction that continues to garner interest among the scientific community. Investigation of halogen bonds in biological contexts typically revolves around rational drug design for developing therapeutics. However, halogen bonding may be occurring naturally in our body every day. Thyroid hormone and its regulating enzyme, iodothyronine deiodinase, show promising results for a halogen bonding interaction that happens during catalysis. Prior work has examined the interaction between the iodine of thyroid hormone and the selenium of iodothyronine deiodinase. However, this study is the first of its kind to use computational chemistry methods to analyze the halogen bond …

Investigation Of The Effects Of Resveratrol And Epigallocatechin Gallate On Woodsmoke-Induced Inflammation, Sarenna Naomi Enright

Honors Theses

Until a few years ago, most scientific investigations related to the health effects of air pollution focused on outdoor air pollutants. But in recent years, the concerns over indoor air pollution has increased. People can spend up to 90% of their time in indoor environments, especially their homes, even more so since the beginning of the COVID-19 pandemic. The concentrations of some air pollutants are five times higher than what is found outdoors.

Indoor air pollution exposure remains a significant cause of morbidity and mortality worldwide. Approximately half of the global population is exposed to abnormally high concentrations of household …

The Socioeconomic & Environmental Factors Influencing Prevalence Of Zoonotic Pathogens In Rats: A Meta-Analysis, Katelyn Wing

Honors Theses

Background/Question/Methods

Global rat populations are increasing at an alarming rate across the world. In turn, this increases the risk of human-rat interactions and the potential spread of zoonotic pathogens and parasites. Rats are the second most common host of disease and can have detrimental effects in urban ecosystems. Rattus rattus and R. norvegicus are the two most abundantly distributed species of rats and are the target organism for this study. The aim of this study is to understand the connection between environmental and socioeconomic factors that influence the rate of zoonotic disease in rats. We developed two hypotheses to gain …

New Species And New Combinations In Afrotropical Eucosmocydia Diakonoff, 1988 (Lepidoptera: Tortricidae: Olethreutinae), John W. Brown, Jozef Razowski, Leif Aarvik, Alicia E. Timm, Robert S. Copeland

Insecta Mundi

Eight new species of Eucosmocydia Diakonoff are described and illustrated from the Afrotropical region: E. pappeana Brown and Razowski, new species (TL: Kenya); E. deinbolliana Brown and Razowski, new species (TL: Kenya); E. ugandensis Aarvik, new species (TL: Uganda); E. lecaniodiscana Brown and Razowski, new species (TL: Kenya); E. nigeriana Brown and Razowski, new species (TL: Nigeria); E. pan­coviana Brown and Razowski, new species (TL: Kenya); E. kirimiriana Brown and Razowski, new species (TL: Kenya); and E. macabensis Brown and Razowski, new species (TL: Mauritius). Three additional species are transferred to the genus: E. hymenosa …

Identification Of A Potential Pathway Of The Exotic Black Weevil (Coleoptera: Curculionidae) In South Korea, Sohee Kim, Seon Woo Lee, Soo-Jung Suh

Insecta Mundi

The black weevil, Aclees taiwanensis Kôno (Coleoptera: Curculionidae), is one of the primary pests of fig trees in southeastern Asia and southern Europe. Thought to be of subtropical and tropical Asian origin, including China, the weevil was first found in southern areas of South Korea in July 2020. Subsequently, it was found in the following five cities: Haenam, Hampyeong, Jindo, Sinan, and Tongyeong (RDA 2020). Attempts to trace a possible pathway for the exotic black weevil suggested that this species probably followed pathways of illegal importation of infested plants from Taiwan and was unintentionally introduced into South Korea based on …

Towards Conserving Crop Wild Relatives Along The Texas–Mexico Border: The Case Of Manihot Walkerae, Gisel Garza, Crystian Sadel Venegas Barrera, Jon Dale, José Guadalupe Martínez-Ávalos, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered species endemic to south Texas and northeastern Mexico and is a Crop Wild Relative (CWR) of the international and economically important crop cassava (M. esculenta). Manihot walkerae is globally endangered (IUCN’s Redlist, Texas list, USA); however, it is not recognized on the Mexican list of endangered species (NOM-059-SEMARNAT). We assessed the status of M. walkerae in Mexico and re-evaluated its global status. According to our analysis, M. walkerae should be considered an endangered species based on the IUCN’s assessment method and a threatened species in Mexico based on the Mexican criteria. Our findings …

Increased Risk Of Mental Illness Due To Epigenetic Alteration Of The Nr3c1 Gene After Early Life Adversity., Erin Mccue

Thinking Matters Symposium

Early life adversity (ELA), such as malnutrition, abuse, and economic disparity, is an issue commonly seen in adolescents, a group already facing increased risk for stress-related disorders. This review of current literature reveals that gestational stress exposure, as well as variations in maternal care during postnatal development, cause latent effects on the epigenome, specifically impacting the glucocorticoid receptors (GRs) encoded by the NR3C1 gene. GRs bind to glucocorticoids to regulate the body’s neuroendocrine stress response. However, in those with a history of ELA, the number of GRs is reduced, generating dysregulation within the hypothalamic-pituitary-adrenal (HPA) axis. Rodent studies are utilized …

The Central Dogma: Gene Expression, Ayisha Sookdeo

Open Educational Resources

In this lesson plan, students will learn the basic structure and function of DNA and RNA. They will also learn the process of gene expression. Finally, students will learn about the scientific contributor, Ernest Everest Just, and his contributions to the field of Biology.

Svanna: Efficient And Accurate Pathogenicity Prediction Of Coding And Regulatory Structural Variants In Long-Read Genome Sequencing., Daniel Danis, Julius O B Jacobsen, Parithi Balachandran, Qihui Zhu, Feyza Yilmaz, Justin Reese, Matthias Haimel, Gholson J Lyon, Ingo Helbig, Christopher J Mungall, Christine R Beck, Charles Lee, Damian Smedley, Peter N Robinson

Faculty Research 2022

Structural variants (SVs) are implicated in the etiology of Mendelian diseases but have been systematically underascertained owing to sequencing technology limitations. Long-read sequencing enables comprehensive detection of SVs, but approaches for prioritization of candidate SVs are needed. Structural variant Annotation and analysis (SvAnna) assesses all classes of SVs and their intersection with transcripts and regulatory sequences, relating predicted effects on gene function with clinical phenotype data. SvAnna places 87% of deleterious SVs in the top ten ranks. The interpretable prioritizations offered by SvAnna will facilitate the widespread adoption of long-read sequencing in diagnostic genomics. SvAnna is available at https://github.com/TheJacksonLaboratory/SvAnn a …

Comparison Of Five Supervised Feature Selection Algorithms Leading To Top Features And Gene Signatures From Multi-Omics Data In Cancer, Tapas Bhadra, Saurav Mallik, Neaj Hasan, Zhongming Zhao

Faculty, Staff and Student Publications

BACKGROUND: As many complex omics data have been generated during the last two decades, dimensionality reduction problem has been a challenging issue in better mining such data. The omics data typically consists of many features. Accordingly, many feature selection algorithms have been developed. The performance of those feature selection methods often varies by specific data, making the discovery and interpretation of results challenging.

METHODS AND RESULTS: In this study, we performed a comprehensive comparative study of five widely used supervised feature selection methods (mRMR, INMIFS, DFS, SVM-RFE-CBR and VWMRmR) for multi-omics datasets. Specifically, we used five representative datasets: gene expression …

A New Species Of Celastrina From The Northwestern United States And Southwestern Canada With A Lectotype Designation Of Lycaena Pseudargiolus Var. Nigrescens Fletcher (Lycaenidae: Polyommatinae), Caitlin C. Labar, Jonathan P. Pelham, Norbert G. Kondla

The Taxonomic Report of the International Lepidoptera Survey

A new western azure species, Celastrina asheri, is described from the northwestern United States and southwestern Canada. A lectotype is designated for Lycaena pseudargiolus var. nigrescens Fletcher, 1903 to secure the identity of that name. C. asheri broadly overlaps with the northeastern range of C. echo (W. H. Edwards, 1864) but is usually very distinct from that species. C. lucia (W. Kirby, 1837) is narrowly sympatric with C. asheri in British Columbia, the southwest corner of Alberta and along the Rocky Mountains in Montana. As far as is known, C. asheri uses only red osier dogwood (Cornus sericea …

Dna Methylation Among Chestnut-Crowned Babblers, Caddie E. Nguyen

Honors College Theses

Many Australian birds, including chestnut-crowned babblers, commonly use cooperative breeding. In these species, individuals may delay or refuse dispersal to provide care to the offspring of the others instead of producing their own. This system challenges natural selection evolution and postulates that reproductively advantage genes will be more favorable. One possibility that contributes to chestnut-crowned babblers’ dispersal behavior is the epigenetic modifications interacting between the genome and the environment during development. Chestnut-crowned babblers (Pomatostomus ruficeps) are usually found in arid and semi-arid zones, which are varied and poor-conditioned. In the undesired conditions, helpers are needed for breeding to occur …