Life Sciences Commons^™

Determining Hand-Harvest Parameters And Postharvest Marketability Impacts Of Fresh-Market Blackberries To Develop A Soft-Robotic Gripper For Robotic Harvesting, Andrea Lea Myers, Anthony Gunderman, Renee Threlfall, Yue Chen

Food Science Faculty Publications and Presentations

Hand-harvesting parameters and postharvest marketability attributes of fresh-market blackberries (Rubus L. subgenus Rubus Watson) were characterized to develop a prototype for a soft-robotic gripper for robotic harvesting. A custom-made, force-sensing apparatus attached to the thumb and fingers of a person hand-harvesting blackberries was developed to quantify forces used to harvest and to identify appendages for harvesting. Four cultivars of blackberries grown in Arkansas were harvested at optimal ripeness and stored at 2 °C for 21 days to determine the impact on marketability attributes (leakage, decay, and red drupelet reversion). The forces during harvest imparted by the thumb and middle …

Relative Palatability And Efficacy Of Brodifacoum-25d Conservation Rodenticide Pellets For Mouse Eradication On Midway Atoll, Peter J. Kappes, Shane R. Siers, Israel L. Leinbach, Robert T. Sugihara, Wesley J. Jolley, Jonathan H. Plissner, Elizabeth N. Flint, Kelly L. Goodale, Gregg R. Howald

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive mice (Mus spp.) can negatively impact island species and ecosystems. Because fewer island rodent eradications have been attempted for mice compared to rats (Rattus spp.), less is known about efficacy and palatability of rodenticide baits for mouse eradications. We performed a series of bait acceptance and efficacy cage trials using a standard formulation of brodifacoum-based rodenticide on wild-caught mice from Sand Island, Midway Atoll, to help inform a proposed eradication there. Mice were offered ad libitum brodifacoum pellets along with various alternative food sources, and a “no choice” treatment group received only bait pellets. Mortality in the no choice …

Intercontinental Movement Of Highly Pathogenic Avian Influenza A(H5n1) Clade 2.3.4.4 Virus To The United States, 2021, Sarah N. Bevins, Susan A. Shriner, James C. Cumbee Jr., Krista E. Dilione, Kelly E. Douglass, Jeremy W. Ellis, Mary Lea Killian, Mia K. Torchetti, Julianna B. Lenoch

United States Department of Agriculture Wildlife Services: Staff Publications

We detected Eurasian-origin highly pathogenic avian influenza A(H5N1) virus belonging to the Gs/GD lineage, clade 2.3.4.4b, in wild waterfowl in 2 Atlantic coastal states in the United States. Bird banding data showed widespread movement of waterfowl within the Atlantic Flyway and between neighboring flyways and northern breeding grounds.

Metabolic Signatures Of Kin Recognition In The Model Angiosperm Arabidopsis Thaliana, Thiara Siqueira Bento

Theses and Dissertations

Many organisms have evolved to identify and respond to differences in genetic relatedness between conspecifics, allowing them to select between competitive and facilitative strategies to improve fitness. Due to their sessile nature, plants frequently draw from the same pool of nutrients, and the ability to limit competition between closely related conspecifics would be advantageous. Over the last 3 decades, significant evidence has accumulated in multiple species that such ‘kin recognition’ (KR) is indeed commonplace in plants. I propose that if KR has evolved, at least in part, as a plant-plant interaction to regulate nutrient uptake, then nutrients should modulate the …

Implementation Of Preemptive Dna Sequence-Based Pharmacogenomics Testing Across A Large Academic Medical Center: The Mayo-Baylor Right 10k Study, Liewei Wang, Steven E Scherer, Suzette J Bielinski, Donna M Muzny, Leila A Jones, John Logan Black, Ann M Moyer, Jyothsna Giri, Richard R Sharp, Eric T Matey, Jessica A Wright, Lance J Oyen, Wayne T Nicholson, Mathieu Wiepert, Terri Sullard, Timothy B Curry, Carolyn R Rohrer Vitek, Tammy M Mcallister, Jennifer L St Sauver, Pedro J Caraballo, Konstantinos N Lazaridis, Eric Venner, Xiang Qin, Jianhong Hu, Christie L Kovar, Viktoriya Korchina, Kimberly Walker, Harshavardhan Doddapaneni, Tsung-Jung Wu, Ritika Raj, Shawn Denson, Wen Liu, Gauthami Chandanavelli, Lan Zhang, Qiaoyan Wang, Divya Kalra, Mary Beth Karow, Kimberley J Harris, Hugues Sicotte, Sandra E Peterson, Amy E Barthel, Brenda E Moore, Jennifer M Skierka, Michelle L Kluge, Katrina E Kotzer, Karen Kloke, Jessica M Vander Pol, Heather Marker, Joseph A Sutton, Adrijana Kekic, Ashley Ebenhoh, Dennis M Bierle, Michael J Schuh, Christopher Grilli, Sara Erickson, Audrey Umbreit, Leah Ward, Sheena Crosby, Eric A Nelson, Sharon Levey, Michelle Elliott, Steve G Peters, Naveen Pereira, Mark Frye, Fadi Shamoun, Matthew P Goetz, Iftikhar J Kullo, Robert Wermers, Jan A Anderson, Christine M Formea, Razan M El Melik, John D Zeuli, Joseph R Herges, Carrie A Krieger, Robert W Hoel, Jodi L Taraba, Scott R St Thomas, Imad Absah, Matthew E Bernard, Stephanie R Fink, Andrea Gossard, Pamela L Grubbs, Therese M Jacobson, Paul Takahashi, Sharon C Zehe, Susan Buckles, Michelle Bumgardner, Colette Gallagher, Kelliann Fee-Schroeder, Nichole R Nicholas, Melody L Powers, Ahmed K Ragab, Darcy M Richardson, Anthony Stai, Jaymi Wilson, Joel E Pacyna, Janet E Olson, Erica J Sutton, Annika T Beck, Caroline Horrow, Krishna R Kalari, Nicholas B Larson, Hongfang Liu, Liwei Wang, Guilherme S Lopes, Bijan J Borah, Robert R Freimuth, Ye Zhu, Debra J Jacobson, Matthew A Hathcock, Sebastian M Armasu, Michaela E Mcgree, Ruoxiang Jiang, Tyler H Koep, Jason L Ross, Matthew G Hilden, Kathleen Bosse, Bronwyn Ramey, Isabelle Searcy, Eric Boerwinkle, Richard A Gibbs, Richard M Weinshilboum

Faculty, Staff and Student Publications

PURPOSE: The Mayo-Baylor RIGHT 10K Study enabled preemptive, sequence-based pharmacogenomics (PGx)-driven drug prescribing practices in routine clinical care within a large cohort. We also generated the tools and resources necessary for clinical PGx implementation and identified challenges that need to be overcome. Furthermore, we measured the frequency of both common genetic variation for which clinical guidelines already exist and rare variation that could be detected by DNA sequencing, rather than genotyping.

METHODS: Targeted oligonucleotide-capture sequencing of 77 pharmacogenes was performed using DNA from 10,077 consented Mayo Clinic Biobank volunteers. The resulting predicted drug response-related phenotypes for 13 genes, including CYP2D6 …

Nanotechnology-Based Approaches To Mitigate Environmental Pollutants -- Induced Neurological Disorders, Jyoti Ahlawat

Open Access Theses & Dissertations

Neurodegenerative diseases such as Parkinson's disease (PD), Alzheimerâ??s Disease (AD) and Huntingtonâ??s Disease (HD) have no cure despite intensive research efforts geared towards therapeutics development. In the USA, patients with PD and AD alone cost the nation ~ $200 billion annually in patient care and lost productivity. Therefore, there remains an urgent and unmet need to develop novel drugs and drug carriers with the potential to slow down, halt and ideally reverse the course of neurodegenerative disorders. The dissertation focuses on developing approaches towards targeting PD using multifactorial mechanisms including the targeting of protein aggregation and oxidative stress. This is …

Regulation Of C-C Chemokine Receptor 7 (Ccr7) Ligand-Mediated Internalization And Chemotaxis By G Protein-Coupled Receptor Kinase Family 4 (Grk-4, 5, 6) In Human Pediatric T-Cell Acute Lymphoblastic Leukemia (T-All), Eduardo Elias Chaib

Open Access Theses & Dissertations

Background and Significance: The Hispanic population is disproportionally affected by T-ALL (T-cell acute lymphoblastic leukemia) when compared to other races in the US. C-C Chemokine Receptor 7 (CCR7) in T-ALL is used during disease progression, and may lead to migration of cancerous cells into the Central Nervous System (CNS) of patients. Goals and Objectives: This project aims to find relevant rates and risk factors for T-ALL for the Hispanic population in the US/Mexico border region. The other aim is to assess the effect of the G protein-coupled Receptor Kinase 4 (GRK-4) family proteins on migration and receptor internalization through CCR7 …

Small Heat Shock Protein 27 And Its Role In Human Disease, Bianka Andrea Holguin

Open Access Theses & Dissertations

Small heat shock protein 27 (Hsp27) is a ubiquitously expressed molecular chaperone with roles in many physiological processes. As an ATP-independent molecular chaperone, Hsp27 protects substrates from irreversible aggregation and holds them in a folding competent state for later recycling into the proteome. Hsp27 proteins form dimers that are assembled into large oligomeric complexes. Phosphorylation of Hsp27 dissembles the oligomers into chaperone active dimers. Several missense mutations of Hsp27 are causative for the neurodegenerative disorders Charcot-Marie-Tooth disease 2F and distal Hereditary Motor Neuropathy IIB. Here I show that the oligomerization and chaperoning ability of Hsp27 are altered by the Hsp27 …

The Electrostatic Features Of Dengue Virus Capsid Assembly, Alan Eduardo Lopez Hernandez

Open Access Theses & Dissertations

Dengue virus causes serious diseases and considerable deaths each year all around the globe. Dengue virus undergoes assembly in a capsid, matures and becomes viral. Revealing mechanisms of the viral capsid protein may lead to the discovery of novel drugs that prevent this assembly to happen and stop the virus from spreading. Here I present a computational work which is focused on the stability and assembly of the dengue viral capsid. The E and M proteins conform a heterotetramer, which consists of two copies of E and M proteins. The heterotetramers form a highly ordered capsid. In the electrostatic analysis …

Inflammaging: Inflammatory Biomarkers Associated With Nutrition, Metabolism And Muscle Tissue Oxygenation Relative To Sarcopenic Status In Older Adults, Marni Elise Shoemaker

Open Access Theses & Dissertations

The purpose of this study is to examine if we can differentiate inflammaging between sarcopenic and non-sarcopenic older adults by exploring if there are differences between biomarkers of inflammation and nutritional status in older adults with distinct differences in skeletal muscle mass, strength, and function, metabolic flexibility, and muscle tissue oxygenation. Twenty-one non-sarcopenic (mean±standard deviation, age = 73.1±6.2 yrs, n=5 males, n=5 females) and sarcopenic (age = 81.2±10.5 yrs, n=6 males, n=5 females) were categorized based on muscle mass and strength criteria according to the European Working Group on Sarcopenia in Older People. Body composition, handgrip and leg extension strength, …

The Mobility And Cognitive Mechanisms Involved In Altering Gait Speed In Children With Autism Spectrum Disorder, Alyssa Olivas

Open Access Theses & Dissertations

Autism is a socio-behavioral disorder, and diagnoses are conducted through behavioral screening instruments. Recent research suggests motor deficits may be a core symptom of the disorder, as children with autism present with deficits in motor development, locomotor skills, and postural instability. In addition, children with autism often have affected, executive function, attention, and perception cognitive domains. Different gait speeds have been used to examine gait adaptations in other clinical populations. Additionally, individuals with decreased cognitive abilities have demonstrated difficulties in modulating their walking speed. There is limited research on mechanisms children with autism use to alter their gait speed, or …

Understanding The Role Of Small Mammals In Arctic Biogeochemical Cycling, Austin Roy

Open Access Theses & Dissertations

Small mammals play an integral role in their ecosystems. This is especially true in northern ecosystems, where small mammals represent both top-down and bottom-up forces and can have strong effects on ecosystem function through affecting biogeochemical cycling. Despite these important effects, the role of small mammals in influencing biogeochemical cycling has been largely underappreciated in the understanding of arctic ecosystems, leading to a call to better understand how small mammal herbivores impact ecosystem processes including carbon cycling. The overarching goal of this dissertation is to assess how biogeochemical cycling is affected by small mammal herbivore presence, behavior, and population dynamics …

Mapping Salt-Affected Land In The South-West Of Western Australia Using Satellite Remote Sensing, P A. Caccetta, John A. Simons, S Furby, Nicholas J. Wright, Richard J. George Dr

Natural resources published reports

Dryland salinity is a pervasive form of land degradation that has resulted from the clearing of about 17 M ha of native vegetation and the introduction of predominately cereal and pasture-based farming systems in the South-West of Western Australia. The change in water balance caused by clearing deep rooted endemic woodlands increased recharge and resulted in rising groundwater levels. After a lag period, the regolith began filling and groundwater approached the soil surface, evaporating and depositing stored salts in the rootzone of salt sensitive crops. Groundwater levels also rise and affect areas of remnant native vegetation, streams, wet-lands and rural …

A Most Unusual Tail: Scoliosis In A Wild Australian Skink, And Reported Incidences And Suggested Causes Of Similar Malformations Amongst Squamates, Philip W. Bateman, Robyn Benken, Ryan Glowacki, Robert A. Davis

Research outputs 2022 to 2026

Malformations of vertebrae potentially occur across many taxa, particularly in Testudines, which are susceptible to kyphosis (dorsoventral curvature of the spine). Such malformations may stem from either genetic or environmental origins, and their prevalence and associated impacts on survival remain poorly understood. However, scoliosis (sideways curvature of the spine) is rarely reported and especially so in wild lizards. We report here on the first known case of scoliosis in a wild Australian lizard, the skink Ctenotus fallens, from Perth, Western Australia. This occurrence is the first of 805 individuals captured in a natural population monitored annually for the past 11 …

Signaling Strategies And Competition In Male Tungara Frogs, Alison S. Kim

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Relationships And Immature Stage Morphology Of Adelpha Diocles And Its Relatives, Jomel Thomas, Jordan Renner, Lu Han

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

The Effect Of Age On The Mating Call Of The Tungara Frog, Zaizhen Xu

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Growth, Sexual Dimorphism And Resource Allocation In The Túngara Frog, Kaitlyn D. Tonnu

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

What Is The Prevalence Of Dirofilaria Immitis (Dog Heartworm) In Invasive Aedes Mosquitoes?, Leen Yousef, Johan Espinoza Corrales, Daniela H. Dolar, Taylor K. Trieu, Aisha Popalzai, Agamchat Dhami

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

The Effect Of Auditory Stimulation And The Day-Night Cycle On E. Pustulosus Hiding, Movements And Amplexus Behavior., Makaila Gita Gaff

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Medial Edge Chondrification Of The Vocal Folds Of E. Pustulosus And Its Function In Sexual Selection, Helena Soon Czochanski

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Knowledge, Attitudes, And Practices Of Nurses Regarding Antibiotic Stewardship In North Lebanon: A Cross-Sectional Study, Mariam El Baida, Sara Mina

BAU Journal - Health and Wellbeing

ABSTRACT: Background: Antimicrobial resistance is an urgent global issue. Several associations are supporting the implementation of antibiotic stewardship programs in all hospitals. This program is multidisciplinary in its nature however, nurses are often not included in the antibiotic stewardship team. The role of nurses in antibiotic stewardship needs further development, and additional information is needed regarding gaps in nurses’ knowledge and attitudes toward antibiotic stewardship. Hence, this study was conducted to assess the knowledge, attitudes, and practices of nursing staff regarding antibiotic stewardship in North Lebanon and identify the barriers that prevent their participation. Methods: A descriptive cross-sectional study was …

Interleukin-16 Rs4778889 Polymorphism And Its Interaction With Interleukin-10 Rs1800896 Polymorphism Increase The Risk For Knee Osteoarthritis In The Lebanese Population, Zeina El-Ali, Fouad Ziade, Hassan Zmerly, Nisrine Bissar

BAU Journal - Health and Wellbeing

To investigate the effect Interleukin-16 (IL-16) and Interleukin-10 (IL-10) polymorphisms, and their interaction, on knee osteoarthritis (KOA) risk in the Lebanese population. Kompetitive Allele Specific PCR (KASP) genotyping assay was performed to determine IL-16 rs4778889, rs11556218, and rs4072111 and IL-10 rs1800896 polymorphisms in 118 patients diagnosed with KOA ( ≥ 2 points on Kellgren-Lawrence (K&L) radiological classification scale) and 70 controls matched for age and gender (K&L score ≤ 1). After adjusting for age, gender, presence of metabolic disorders, smoking and drinking status, our findings suggest that rs4778889 TT genotype increases the risk for KOA compared to the combined CC …

Covid-19 In Lebanon: Demographics And Distribution, Mahdi Fadlallah, Fadi Hobeiche, Marie Therese Jamal, Elie Salem-Sokhn

BAU Journal - Health and Wellbeing

COVID-19 pandemic has emerged over more than 200 countries leading to more than 117 million infection cases and more than 2.6 million deaths. Lebanon is one of the countries affected by this disease especially in the second half of 2020 reaching its peak early this year. In this study, we studied the impact of multiple factors on this surge and analyzed the positive tests among different age groups over a period of one year (from March 2020 to February 2021). Data was collected from one medical center in Beirut where more than 20,000 PCR tests were done using RT-PCR method …

Food Safety Practices Among Food Carts In -North Lebanon, Hanin Hassan, Nada El Darra, Alissar Al Khatib

BAU Journal - Health and Wellbeing

Street food carts serve different types of popular and traditional foods; it is a common economic sector worldwide. In North Lebanon, food carts are mobile or centered in specific places serving common and well known RTE meals. In addition, the increasing incidence of foodborne illnesses associated with street foods sheds light on the importance of inspecting the practices of street vendors. Therefore, the aim of this study is to assess the food safety in 30 food carts using an observational checklist and to perform microbiological analysis for the detection of foodborne pathogens namely; yeast, mold, Listeria monocytogenes, Salmonella, Enterohemorrhagic E.coli, …

Assessment Of The Lebanese Community Pharmacist Knowledge, Practice And Barriers Regarding The Prevention Of Osteoporosis, Noura Issa Khram, Maha Aboul Ela, Mohamad Ali Hijazi, Lama Soubra

BAU Journal - Health and Wellbeing

Osteoporosis is a silent skeletal disease that is often recognized when fractures occur as a result of minimal trauma. Limited studies have assessed the degree of pharmacists’ involvement in osteoporosis prevention, risk-assessment/screening and physician referrals. To assess the Lebanese community pharmacists’ knowledge, practice and barriers regarding osteoporosis prevention. Secondary aim is to assess the pharmacists’ ability to identify high-risk patients who should be referred for bone mineral density (BMD) testing. A cross-sectional study was carried out in Beirut, Lebanon between September and October 2020 using self-administered questionnaire. Pharmacists completed a multi-component questionnaire that consisted of socio-demographic characteristics, practices, knowledge and …

A Proteomic Analysis To Identify Changes In Bacterial Protein Expression Following Overexpression Of A Spider Silk Protein, Jamie (Ju Yeon) Park, Jaeyoung (Kate) Lee, David Chanyang Eum, Minji Jung, Sungkyung Lee

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Structure-Function Characterization Of Zebrafish Gadd34 And Crep, Alice Thuc Truong, Ciera Wroten, Jessica Woo, Jey Kim, Joshua Tao, Kleo Hong, Twisha Patel

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Identifying Important Bacterial Proteins Involved In Synthesis Of Spider Silk Protein Masp1, Douglas Chan, Derek Chan, Angela Hung, Joochan Koo

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Development Of Cloning Vehicles For Expression Of Gc-Maf In Yeast, Tammy Tran, Seohyun Lee, Jane Yu, Wilson Wu

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.