Life Sciences Commons^™

Collaborative Research: Developing Advanced Magnesium Electrolytes Toward Low Cost, High Energy Density Mg Batteries, Tianbiao Liu

Funded Research Records

No abstract provided.

Role Of Ligand Architecture On Collective Cell Invasion, Amrit Bagchi

McKelvey School of Engineering Graduate Student Theses & Dissertations

Epithelial cell collectives utilize extra-cellular matrix (ECM) fibers to undergo collective migration critical in regeneration, repair and cancer metastasis. However, very little is known about the various factors which determine the ability of cellular collectives to utilize ECM fibers to undergo these critical processes in-vivo. First part of the dissertation focusses on understanding how cell collectives exploit specific properties, like stiffness and fiber length to undergo collective streaming. It is also unclear how cellular forces, cell-cell adhesion, and velocities are coordinated within streams. To independently tune stiffness and collagen fiber length, we developed new hydrogels and discovered invasion-like streaming of …

Understanding Control Of Metabolite Dynamics And Heterogeneity, Christopher John Hartline

McKelvey School of Engineering Graduate Student Theses & Dissertations

Microbes live in complex and continually changing environments. Rapid shifts in nutrient availability are a common challenge for microbes, and cause changes in intracellular metabolite levels. Microbial response to dynamic environments requires coordination of multiple levels of cellular machinery including gene expression and metabolite concentrations. This coordination is achieved through metabolic control systems, which sense metabolite concentrations and direct cellular activity in response. Several reoccurring control architectures are found throughout diverse metabolic systems, which suggests underlying evolutionary advantages for using these control systems to coordinate metabolism. One common, yet understudied, control architecture is the positive feedback metabolite uptake loop, which …

Machine Learning And Scalable Informatics Methods To Predict Disease Status From Multimodal Biomedical Data, Hossein Mohammadian Foroushani

McKelvey School of Engineering Graduate Student Theses & Dissertations

Biological understanding of complex diseases such as stroke and obesity is critical for the advancement of medicine. Further knowledge discovery can provide effective biomarkers to improve disease diagnosis and prognosis, identify driver mutations, predict individual genetic susceptibility for early prevention and effective disease management, and facilitate development of personalized drugs. Stroke is the second leading cause of death and long-term disability in the world. Thus, stroke management is a time-sensitive emergency. The initial hours after stroke onset map the trajectory of subsequent neurologic complications. Cerebral edema develops hours to days after acute ischemic stroke and may result in midline shift …

Ligand- And Strain-Specific Control Of Microbial Communities, Austin Grant Rottinghaus

McKelvey School of Engineering Graduate Student Theses & Dissertations

Microbes naturally coexist in complex, multi-strain communities that are valuable assets for their host. Commensal and probiotic microbes prevent pathogen colonization, reduce the frequency and severity of various ailments, provide essential nutrients, and offer various additional benefits. Understanding the dynamics of and tailoring microbial communities to provide additional beneficial functions is a primary focus of researchers in medicine and agriculture. To date, consortia have primarily been manipulated by supplementing the communities with microbes that were engineered in vitro or by introducing stimuli that alter the metabolism or composition of the community. This method has proven successful, with numerous microbes engineered …

Noninvasive Neuromodulation Via Ultrasonic Activation Of Endogenous And Exogenous Ion Channels, Yaoheng Yang

McKelvey School of Engineering Graduate Student Theses & Dissertations

Neuromodulation technology is key to understanding brain function and treating brain diseases. Conventional neuromodulation technologies, such as direct current stimulation, transcranial magnetic stimulation, and optogenetics, predominately rely on electromagnetic waves. However, the fundamental physical law  the tradeoff-relationship between penetration and spatial resolution, limits their transcranial penetration within the superficial cortex layer. To overcome this challenge, electrodes or optical fibers need to be surgically implanted into the brain to modulate specific brain regions. Different from electromagnetic waves, ultrasound, as a mechanical wave, can non-invasively penetrate through the intact skull to reach deep brain regions with millimeter spatial focus. Ultrasound has …

Development Of The Assessment Of Clinical Prediction Model Transportability (Apt) Checklist, Sean Chonghwan Yu

McKelvey School of Engineering Graduate Student Theses & Dissertations

Clinical Prediction Models (CPM) have long been used for Clinical Decision Support (CDS) initially based on simple clinical scoring systems, and increasingly based on complex machine learning models relying on large-scale Electronic Health Record (EHR) data. External implementation – or the application of CPMs on sites where it was not originally developed – is valuable as it reduces the need for redundant de novo CPM development, enables CPM usage by low resource organizations, facilitates external validation studies, and encourages collaborative development of CPMs. Further, adoption of externally developed CPMs has been facilitated by ongoing interoperability efforts in standards, policy, and …

Measuring And Controlling Medical Record Abstraction (Mra) Error Rates In An Observational Study, Songthip Ounpraseuth, Zhuopei Hu, Jeannette Lee, Jessica Snowden, Meredith N Zozus, Anita C Walden, Alan E Simon, Barbara Mcclaskey, Sarah G Sanders, Sandra S Beauman, Sara R Ford, Lacy Malloch, Amy Wilson, Lori A Devlin, Leslie W Young

Faculty, Staff and Student Publications

BACKGROUND: Studies have shown that data collection by medical record abstraction (MRA) is a significant source of error in clinical research studies relying on secondary use data. Yet, the quality of data collected using MRA is seldom assessed. We employed a novel, theory-based framework for data quality assurance and quality control of MRA. The objective of this work is to determine the potential impact of formalized MRA training and continuous quality control (QC) processes on data quality over time.

METHODS: We conducted a retrospective analysis of QC data collected during a cross-sectional medical record review of mother-infant dyads with Neonatal …

Secure Human Action Recognition By Encrypted Neural Network Inference, Shayan Shams

Faculty, Staff and Student Publications

Advanced computer vision technology can provide near real-time home monitoring to support "aging in place" by detecting falls and symptoms related to seizures and stroke. Affordable webcams, together with cloud computing services (to run machine learning algorithms), can potentially bring significant social benefits. However, it has not been deployed in practice because of privacy concerns. In this paper, we propose a strategy that uses homomorphic encryption to resolve this dilemma, which guarantees information confidentiality while retaining action detection. Our protocol for secure inference can distinguish falls from activities of daily living with 86.21% sensitivity and 99.14% specificity, with an average …

Development Of Noninvasive Biomarkers For Cervical Spondylotic Myelopathy, Dinal Jayasekera

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cervical spondylotic myelopathy (CSM) represents the most common cause of chronic spinal cord injury (SCI) in adults. Many patients with symptomatic CSM will experience a decline in neurological function and consequently undergo surgical decompression. Unfortunately, surgeons are unable to adequately counsel patients about the benefits of surgery because the natural history of disease and outcome after decompression vary widely among patients. This can hinder the decision-making capacity of patients and physicians. Therefore, we require additional tools to help guide therapy and counsel patients with CSM. Noninvasive biomarkers present valuable potential as predictors of a patient’s recovery in the long term. …

Tfa Inference: Using Mathematical Modeling Of Gene Expression Data To Infer The Activity Of Transcription Factors, Cynthia Ma

McKelvey School of Engineering Graduate Student Theses & Dissertations

Transcription factors (TFs) are a set of proteins that play a key role in the information processing system that enables a cell to respond to changes in internal and external state. By binding near a gene in a cell’s DNA, a TF can influence that gene’s expression level, triggering the appropriate increase or decrease in production levels of proteins that are needed to handle stressors like a change in nutrient availability or damage to the cell’s internal structures. Transcription factor activity (TFA) is a measure of how much effect a TF has on its target genes in a given sample …

Mechanisms Of Primate Working Memory, Charles Damian Holmes

McKelvey School of Engineering Graduate Student Theses & Dissertations

One of the defining features of the behavior of many animal species is the ability to retain and utilize information from the environment even after it is gone. The encoding and utilization of information on short time scales is referred to as working memory. It is not yet fully understood how the brain accomplishes working memory.

This dissertation presents three studies that help to characterize the working memory system of primates. All three studies involve primates performing saccades during a spatial memory task. The first study demonstrates that while the local field potential power is contralaterally tuned (i.e., power is …

Modeling, Analysis, And Simulation To Reveal The Mechanisms Of Ciliary Beating, Louis Woodhams

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cilia are microscopic cellular appendages that help us breathe by clearing our airways, maintain the health of our central nervous system by circulating cerebrospinal fluid, and allow us to reproduce by transporting eggs and propelling sperm cells. Cilia even determine the asymmetry of our internal organs during embryonic development. However, the mechanisms underlying ciliary beating are not fully understood. Questions remain as to how arrays of the motor protein dynein generate the propulsive waveforms observed in cilia and how structural elements within the cilium and its connection to the cell deform during beating. In the current work, mathematical modeling, analysis, …

Intrinsic Cardiac Effects Of Severe Acute Respiratory Syndrome Coronavirus 2 In Coronavirus Disease 2019, Brittany Danielle Brumback

McKelvey School of Engineering Graduate Student Theses & Dissertations

Cardiac arrhythmias, particularly ventricular arrhythmias, can be life-threatening and caused by both congenital genetic mutations and acquired cardiac injury. My thesis work was originally focused on delineating the effects of genetic mutation-driven dysregulation of a protein called Hey2 in Brugada Syndrome, a complex disease characterized by a predisposition to dangerous arrhythmias originating in the right ventricular outflow tract. In response to the pandemic, my thesis work shifted toward understanding the mechanisms of cardiovascular injury in Coronavirus disease 2019 (COVID-19), which is associated with serious cardiovascular complications, including ventricular arrhythmias and sudden cardiac death as well as endothelial dysfunction and coagulopathies. …

Advancing The Assessment And Treatment Of Signs And Symptoms Of Parkinson Disease, David Scott May

WUSM Theses and Dissertations – All Programs

People with PD often report signs and symptoms that negatively impact quality of life. Among these are balance difficulties, impaired gait, and FOG. New treatment and assessment strategies for these signs and symptoms are needed, as current techniques are limited. While new treatment and assessment strategies continue to emerge, gaps in knowledge persist. Deep brain stimulation (DBS) has been utilized in many people with PD throughout the 21st century, but it is unknown specifically how subthalamic nucleus deep brain stimulation (STN-DBS) affects balance. Alternative treatment strategies, such as a dental mouthpiece, have also been proposed. While dental mouthpieces have shown …

Association Between The Baseline Gene Expression Profile In Periapical Granuloma And Periapical Wound Healing After Surgical Endodontic Treatment, Muhammad Adeel Ahmed, Fizza Nazim, Khalid Ahmed, Muhammad Furqan Bari, Abdulaziz Abdulwahed, Ahmed A. Almokhatieb, Yaseen Alalvi, Tariq Abduljabbar, Muhammad Nouman Mughal, Syed Hani Abidi

Department of Biological & Biomedical Sciences

In this study, we have investigated the association between the baseline gene expression profile in periapical granuloma and periapical wound healing after surgical endodontic treatment. Twenty-seven patients aged between 15 and 57 years underwent periapical surgery. The retrieved periapical tissue sample was used for mRNA expression analysis of COL1A1, VTN, ITGA5, IL-4, TNF, ANGPT, VEGFA, and CTGF. All patients were recalled after 6 and 12 months for periapical healing evaluation. Healing was then correlated with baseline gene expression. Healing was observed in 15 patients at the end of 6 months, which increased to 21 patients after 12 months. Six patients …

Smokejumper Obituary: Lockwood, Charles Melvin “Chuck” (Missoula 1965), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Van Wagtendonk, Jan W. (Cave Junction 1960), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Re-Analysis And Additional Information Needed To Inform Conclusions Comment On Halenova Et Al Deuterium-Depleted Water As Adjuvant Therapeutic Agent For Treatment Of Diet-Induced Obesity In Rats, Colby J Vorland, Xiwei Chen, Daniella E Chusyd, Luis M Mestre, Stephanie L Dickinson, David B Allison, Andrew W Brown

Children’s Nutrition Research Center Staff Publications

We were interested to read the report by Halenova et al. [...].

Comparative Genomics And Virulence Studies Of Streptomyces Soil Rot And Scab Pathogen Species, Natasha Soares

LSU Doctoral Dissertations

Comparative genomic analyses were performed to gain insights into the organization and content of the genome of Streptomyces ipomoeae, the soil rot pathogen that infects sweetpotatoes. Unlike Streptomyces scab pathogens, the thaxtomin phytotoxin gene cluster (txt) in S. ipomoeae does not appear to reside within a genomic island and has diverged from its scab pathogen counterparts. Increased usage of the rare TTA codon, particularly for the txt cluster, suggests greater translational control by the bldA tRNA in S. ipomoeae. Orthologous gene searches and secondary metabolite profiling yielded ortholog groups and metabolite gene clusters that were exclusive …

A Multi-Institutional Prediction Model To Estimate The Risk Of Recurrence And Mortality After Mastectomy For T1-2n1 Breast Cancer, Sarah M C Sittenfeld, Emily C Zabor, Sarah N Hamilton, Henry M Kuerer, Mahmoud El-Tamer, Pauline T Truong, Benjamin D Smith, Wendy A Woodward, Tracy-Ann Moo, Simon N Powell, Chirag S Shah, Alphonse G Taghian, Ibrahim Abu-Gheida, Rahul D Tendulkar

Faculty, Staff and Student Publications

Background: Post-mastectomy radiation therapy (PMRT) in women with pathologic stage T1-2N1M0 breast cancer is controversial.

Methods: Data from five North American institutions including women undergoing mastectomy without neoadjuvant therapy with pT1-2N1M0 breast cancer treated from 2006 to 2015 were pooled for analysis. Competing-risks regression was performed to identify factors associated with locoregional recurrence (LRR), distant metastasis (DM), overall recurrence (OR), and breast cancer mortality (BCM).

Results: A total of 3532 patients were included for analysis with a median follow-up time among survivors of 6.8 years (interquartile range [IQR], 4.5-9.5 years). The 2154 (61%) patients who received PMRT had significantly more …

The Vasorelaxant Effect Of Adiantum Capillus-Veneries Extract In The Vascular Activity Of Goat’S Isolated Renal Artery, Aveen Muhsen Asaad, Ismail Salih Ibraheem

Polytechnic Journal

The current study represents the first attempt to investigate the effect of Adiantum capillus-veneris extract (ACVE) on goat’s isolated renal artery smooth muscle’s cell. Therefore, this research aims to investigate the possible action of Adiantum capillus-veneris extract (ACVE) (1×10-4–10-9 mg/ml) in the vascular activity of goat isolated renal artery by using the organ bath and PowerLab data acquisition system, and the phytochemical analysis for the ACVE extract was done by using gas chromatography-mass spectrometry (GC/MS). The results of the current study showed that ACVE caused concentration-dependent relaxation of endothelium intact renal artery rings precontracted with a high level of KCl …

Comparative Study Of He – Ne And Green Lasers Effect On Normal Human Blood Invitro Using Ftir Techniques, Hero O. Hamad, Venos S. Abdullah, Fouad H. Kamel, Nawroz I. Hassan

Polytechnic Journal

The contact of lasers with biomaterials liketissues, blood, and skin is acentralfield of research. Invitro irradiation of human blood with laser beams has been studied for decades, to understand the biostimulatory effects on the different blood cells. Laser tissue associations are determined by employingspectroscopic and cutting-edge microscopic technicality. In this study, blood was extracted under standard laboratory settings from healthy human subjects. The samples were exposed to He-Ne laser (wavelength ʎ= 650nm, power p= 100mW) and green laser (wavelength ʎ= 530nm, power p= 500mW).Complete blood count (CBC) and FTIR spectra for non-irradiated samples were comparedto CBC and FTIR spectra of …

Genotyping Of The Cat Flea (Ctenocephalides Felis) Parasitizing Domestic Small Ruminants In Erbil – The Kurdistan Region Of Iraq, Hemdad H. Mawlood, Khalis A. Hamad, Nawzad K. Bawaker, Hawri H. Mohammed, Omer M. Amin

Polytechnic Journal

Small ruminants such as sheep and goats are deemed an important economic source in the Kurdistan region. Infestations with haematophagous ectoparasites such as fleas, which are common vectors in transmitting serious bacterial diseases, pose a great menace on the public health and animal welfare. To meet the requirements of the study, convenient sampling and molecular characterization were used to investigate infestations of sheep and goats with the cat flea, Ctenocephalides (C.) felis in Erbil governorate. A total of 400 samples (200 of sheep and 200 of goats) from 12 ruminant farms at five districts from intensive and semi- intensive breeding …

Performance Against Cavity Index And Discharge Coefficient Between Broad And Sharp Crested Weirs, Abdulla A. Abo

Polytechnic Journal

The purpose of this research is examining the performance of rectangular broad and sharp crested weirs in terms of cavity index and discharge coefficient. For this purpose, a computational fluid dynamics CFD code FLUENT is applied. Firstly, the code verified by applies on the experiments work of Hagre et al 1994 the results show excellent agreements between CFD and Hager et al 1994. Secondly the code applied on both broad and sharp crested weirs. The results demonstrate that broad crested weirs have a lower discharge coefficient than sharp crested weirs, implying that broad crested weirs have a lower ability to …

Heavy Metal Accumulation And Contamination Of Edible Plants Irrigated By Wastewater In Erbil- Kurdistan Region Of Iraq, Dilshad Abdulkhaliq Rasul, Karzan M. Khalid, Faeza Burhan Omer

Polytechnic Journal

Heavy metals are important factor for metabolic reaction in edible plants, and also needed by different organs of human body, but their relatively excessive accumulation is hazardous and health risk. Therefore, their concentration in edible plants must be ranged in line, otherwise considered as contaminants. In this study, three edible plants (E. sativa Mill., A. graveolens L. and L. Sativum L.) were harvested and separated to root and shoot parts, then followed by determining some essential and non-essential metals (Pb, Zn, Cd, Cu, Mn and Ni), using ICP-MS. As a result, the maximum mean values for those metals were (46.58 …

Road Traffic Accidents And Environmental Risk Factors In Erbil City, Hayman Mohammed Saeed, Kameran Hassan Ismail

Polytechnic Journal

Motorization has improved the lives of people and societies; these benefits have to go with a value. Though the number of lives lost in road accidents in high-income nations points to a downward style in recent decades, for many of the world's population, the liability of road-traffic injury in terms of social and economic costs is rising considerably. This study aims to determine the prevalence of the environmental factors associated with the outcomes in Erbil city. A community-based cross-sectional descriptive household visits survey study was carried out from March-November 2021 and was composed of 3743 individuals selected through a multi‐stage …

Prevalence Of Mortality Among Covid-19 Patients In Kurdistan Region And Various Parts Of The World And The Role Of Ecological And Environmental Factors In Shaping Sars-Cov-2 Virulence, Muayad A. Mahmud

Polytechnic Journal

Evolutionary theories predict that virulence (host death due to a pathogen) positively associates with the pathogen transmission rates to new susceptible hosts. Severe acute respiratory syndrome coronavirus 2 (SARS- CoV-2), the causative agent of coronavirus disease 2019 (covid-19) pandemic, like other RNA viruses, has quite variable genetic content due to its unique nucleus enzymes thus mutations can continuously occur during viral replications. Phenotype variations among new viral progeny can include individuals with different replication rates, infectivity, stability in the abiotic environment, and transmission rate. Here, the rate of transmission to new susceptible hosts may be affected by the pathogen’s vitality …

Comparison Of Full Crushed Aggregate (Harsh Mix Of Sandstone) And Partially Crushed Aggregate On Some Properties Of Hma, Ismael Azeez Mohammed, Faris Mohammed Jasim

Polytechnic Journal

Aggregate angularity has an important effect on the performance of HMA. More angular aggregates particles can increase the stone-on-stone interlocking and consequently reduce the permanent deformation. The performance of dense graded asphalt mixture is significantly influenced by the angularity, shape, and surface texture of aggregates. This study determines the effect of using Harsh aggregate (full crushed) and normal aggregate in asphalt mixture, and evaluates the volumetric properties of both mixtures. Marshall Test was carried out in order to assess the resistance of stability of mixtures. It was found that a mixture with harsh aggregate needs (0.2 %) more asphalt compared …

Breastfeeding Knowledge Among A Sample Of Women Attending Maternal And Pediatric Hospital Of Soran City, Kareem Jamal Hamad, Hiwa Abdulrahman Awlla

Polytechnic Journal

Breastfeeding is the ideal method suited for the physiological and psychological needs of an infant and the most vital intervention for reducing infant mortality and ensuring optimal growth and development of a child. Human breast milk is considered the healthiest form of milk for children and contains essential nutrients, vitamins, and minerals during the first six months. The purpose of this study was to find out about breastfeeding knowledge and its relationship with women’s socio-demographic characteristics.