Life Sciences Commons^™

2021 (33rd) Report Of The Nou Records Committee, Mark A. Brogie

Nebraska Bird Review

The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website www.NOUbirds.org. Starting in 2020, the NOURC decided to deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska”. Casual species and out-of- range species are now summarized in the “Seasonal Reports” of the …

The Nebraska Bird Review. Volume 90 September 2022 Number 3

Nebraska Bird Review

Summer Field Report, June - July 2022 by W. Ross Silcock ….90

2021 (33rd) Report of the NOU Records Committee by Mark A. Brogie … 113

Subscription and Organization Information … 123

Involvement Of Glutamine Synthetase 2 (Gs2) Amplification And Overexpression In Amaranthus Palmeri Resistance To Glufosinate, Matheus M. Noguera, Aimone Porri, Isabel S. Werle, James Heiser, Frank Brandle, Jens Lerchl, Brent Murphy, Michael Betz, Fanny Gatzmann, Martin Penkert, Clara Tuerk, Lucie Meyer, Nilda Roma-Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Amaranthus palmeri has recently evolved resistance to glufosinate herbicide. Several A. palmeri populations from Missouri and Mississippi, U.S.A. had survivors when sprayed with glufosinate-ammonium (GFA, 657 g ha⁻¹). One population, MO#2 (fourfold resistant) and its progeny (sixfold resistant), were used to study the resistance mechanism, focusing on the herbicide target glutamine synthetase (GS). We identified four GS genes in A. palmeri; three were transcribed: one coding for the plastidic protein (GS2) and two coding for cytoplasmic isoforms (GS1.1 and GS1.2). These isoforms did not contain mutations associated with resistance. The 17 glufosinate survivors …

Short-Eared Owl Land-Use Associations During The Breeding Season In The Western United States, Robert A. Miller, Joseph B. Buchanan, Theresa L. Pope, Jay D. Carlisle, Colleen E. Moulton, Travis L. Booms

Intermountain Bird Observatory Publications and Presentations

The Short-eared Owl (Asio flammeus) is a species of conservation concern in the western USA, with evidence for declining population sizes. Monitoring of Short-eared Owls is complicated because of their low site fidelity and nomadic movements. We recruited community-science participants to implement a multi-year survey of Short-eared Owls across eight states in the western USA, resulting in a program of sufficient temporal and spatial dimensions to overcome many of the challenges in monitoring this species. We implemented both multi-scale occupancy and colonization/extinction modeling to provide insights into land-cover use, and to identify which cover types supported higher occurrence. …

Importance Of Flood Irrigation For Foraging Colonial Waterbirds, Colleen E. Moulton, Jay D. Carlisle, Sonya J. Knetter, Kathryn Brenner, Robert A. Cavallaro

Intermountain Bird Observatory Publications and Presentations

For a colonial‐nesting bird, like the white‐faced ibis (Plegadis chihi), the landscape surrounding the breeding colony can be important. White‐faced ibis must rely on areas outside their breeding colony for foraging, but this part of their life history has received little attention, and the management of this landscape even less so. To address this knowledge gap, we conducted road‐based driving surveys and a randomly selected, spatially balanced sample survey of agricultural fields within a 22‐km radius of the 2 largest white‐ faced ibis breeding colonies in Idaho, USA: Market Lake Wildlife Management Area and Mud Lake Wildlife Management …

Belonging Amidst Bias: Embracing Difference On The Path To Common Humanity, Alyssia Sheikh

Mindfulness Studies Theses

The mindfulness community prioritizes self-awareness and common humanity, but is often entrapped by the idea that oneness is equivalent to sameness. This inclination for objectivity is rooted in the same neural propensities that facilitate bias; the brain is a subjective organ, however, and so neurologically speaking, bias is inevitable. This paper asks: Is striving for sameness separating us from interconnectedness? A human experience is a subjective, diverse, and variable one. The path to shared humanity and social justice co-occurs with increasing cultural humility through mindful awareness and acknowledging our subjective nature. Exploring our neurological tendency to make assumptions, we …

City Of Culver City Coyote Management Report, Melinda Weaver, Michele Romolini, Eric G. Strauss

Center for Urban Resilience Reports

EXECUTIVE SUMMARY

The scientific staff at the LMU Center for Urban Resilience, along with affiliated scientists, collaborators and students conducted a three-year management study in order to assist the City of Culver City and its residents in managing the dynamic challenge of coexisting with resident and transient coyotes. Despite the considerable social and logistical upheaval caused by the Covid-19 outbreak, CURes staff and collaborators collected and analyzed data continuously through the various phases of the pandemic. The goals of the project were to: 1) Gather appropriate ecological, technical and human social data with regard to coyote ecology and human-wildlife conflict, …

Pest Population Dynamics Are Related To A Continental Overwintering Gradient, Douglas Lawton, Anders S. Huseth, George G. Kennedy, Amy C. Morey, William D. Hutchison, Dominic D. Reisig, Seth J. Dorman, De Shae Dillard, Robert C. Venette, Russell L. Groves, John J. Adamczyk, Izailda Barbosa Dos Santos, Tracey Baute, Sebe Brown, Eric Burkness, Ashley Dean, Galen P. Dively, Hélène B. Doughty, Shelby J. Fleischer, Jessica Green, Jeremy K. Greene, Krista Hamilton, Erin Hodgson, Thomas E. Hunt, David Kerns, Billy Rogers Leonard, Sean Malone, Fred Musser, David Owens, John C. Palumbo, Silvana L. Vieira De Paula Moraes, Julie A. Peterson, Ricardo Ramirez, Silvia I. Rondon, Tracy L. Schilder, Abby Seaman, Lori Spears, Scott D. Stewart, Sally Taylor, Tyler Towles

Department of Entomology: Faculty Publications

Overwintering success is an important determinant of arthropod populations that must be considered as climate change continues to influence the spatiotemporal population dynamics of agricultural pests. Using a long-term monitoring database and biologically relevant overwintering zones, we modeled the annual and seasonal population dynamics of a common pest, Helicoverpa zea (Boddie), based on three overwintering suitability zones throughout North America using four decades of soil temperatures: the southern range (able to persist through winter), transitional zone (uncertain overwintering survivorship), and northern limits (unable to survive winter). Our model indicates H. zea population dynamics are hierarchically structured with continental-level effects …

Integrated Pest And Pollinator Management, Ann Mull, Lori R. Spears, Marion Murray, Ricardo Ramirez

All Current Publications

An inextricable link exists between humans and pollinators, with benefits that include ecosystem health and function and human food security. Bees, butterflies, moths, wasps, flies, and beetles are responsible for most the world's pollination services. Considering the mounting scientific evidence denoting global pollinator declines, there is a critical need to prioritize pollinators and the essential services they provide. This fact sheet provides information about integrated pest and pollinator management (IPPM), which goes beyond integrated pest management (IPM) to include proactive, preventive measures that consider pollinators as well as pests in horticulture management.

Ranunculus Cut Flower Production Budget, One High Tunnel, Northern Utah, 2022, Shannon Rauter, Melanie Stock, Ruby Ward

All Current Publications

This budget contains costs (preplant and site preparation, establishment and maintenance, and harvest and processing) and returns for the production and sale of ranunculus cut flowers that were grown in a high tunnel (14 feet by 40 feet). Production methods, yield, costs, and pricing were determined from Utah State University research trials, as well as feedback from Northern Utah producers. The costs and returns represent typical production in Northern Utah but should be adjusted where necessary for individual situations. Site selection, tunnel use, variety, harvest timing, pest management, and other practices will impact costs and returns to a cut-flower operation.

Geography, Niches, And Transportation Influence Bovine Respiratory Microbiome And Health, Jianmin Chai, Xinting Liu, Hunter Usdrowski, Feilong Deng, Ying Li, Jiangchao Zhao

Animal Science Faculty Publications and Presentations

Bovine respiratory disease (BRD), one of the most common and infectious diseases in the beef industry, is associated with the respiratory microbiome and stressors of transportation. The impacts of the bovine respiratory microbiota on health and disease across different geographic locations and sampling niches are poorly understood, resulting in difficult identification of BRD causes. In this study, we explored the effects of geography and niches on the bovine respiratory microbiome and its function by re-analyzing published metagenomic datasets and estimated the main opportunistic pathogens that changed after transportation. The results showed that diversity, composition, structure, and function of the bovine …

Shore-Based Recreational Fishing In The Perth Metropolitan Area: 2022, Alissa Tate, Lucy Rudd, Claire B. Smallwood

Fisheries Research Reports

Recreational fishing is a popular activity in Western Australia (WA), occurring throughout the state from boats, and from a variety of natural and man-made structures along the shore. Ongoing monitoring of the shore-based recreational fishery is essential to assist with resource allocation, management evaluation and stock assessments for nearshore species. Especially for species such as Australian Herring and Southern Garfish which had management changes including a reduction in bag limit from 30 to 12 in 2015 and closure of Perth Metropolitan waters in 2017, respectively. An on-site roving creel survey to collect effort and catch data from shore fishers has …

Lingnan Gardeners Newsletter (No. 63) = 彩園通訊 (第63期), Lingnan Gardeners, Centre For Cultural Research And Development, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

No abstract provided.

Community-Powered Urban Stream Restoration: A Vision For Sustainable And Resilient Urban Ecosystems, Mateo Scoggins, Derek B. Booth, Tim Fletcher, Megan Fork, Ana Gonzalez, Rebecca L. Hale, Robert J. Hawley, Allison H. Roy, Erika E. Bilger, Nick Bond, Matthew James Burns, Kristina G. Hopkins, Kate H. Macneale, Eugenia Marti, Kyle S. Mckay, Martin W. Neale, Michael J. Paul, Blanca Rios-Touma, Kathryn L. Russell, Robert F. Smith, Staryn Wagner, Seth Wenger

Biology Faculty Publications

Urban streams can provide amenities to people living in cities, but those benefits are reduced when streams become degraded, potentially even causing harm (disease, toxic compounds, etc.). Governments and institutions invest resources to improve the values and services provided by urban streams; however, the conception, development, and implementation of such projects may not include meaningful involvement of community members and other stakeholders. Consequently, project objectives may be misaligned with community desires and needs, and projects may fail to achieve their goals. In February 2020, the 5(th) Symposium on Urbanization and Stream Ecology, an interdisciplinary meeting held every 3 to 5 …

Epigenetic Influences Of Mobile Genetic Elements On Ciliate Genome Architecture And Evolution, Caitlin M. Timmons, Shahed U.A. Shazib, Laura A. Katz

Biological Sciences: Faculty Publications

Mobile genetic elements (MGEs) are transient genetic material that can move either within a single organism's genome or between individuals or species. While historically considered “junk” DNA (i.e., deleterious or at best neutral), more recent studies reveal the potential adaptive advantages MGEs provide in lineages across the tree of life. Ciliates, a group of single-celled microbial eukaryotes characterized by nuclear dimorphism, exemplify how epigenetic influences from MGEs shape genome architecture and patterns of molecular evolution. Ciliate nuclear dimorphism may have evolved as a response to transposon invasion and ciliates have since co-opted transposons to carry out programmed DNA deletion. Another …

Taxon-Rich Transcriptomics Supports Higher-Level Phylogeny And Major Evolutionary Trends In Foraminifera, Roberto Sierra, Florian Mauffrey, Joana Cruz, Maria Holzmann, Andrew J. Gooday, Xyrus Maurer-Alcalá, Rabindra Thakur, Mattia Greco, Agnes K.M. Weiner, Laura A. Katz, Jan Pawlowski

Biological Sciences: Faculty Publications

Foraminifera, classified in the supergroup Rhizaria, are a common and highly diverse group of mainly marine protists. Despite their evolutionary and ecological importance, only limited genomic data (one partial genome and nine transcriptomic datasets) have been published for this group. Foraminiferal molecular phylogeny is largely based on 18S rRNA gene sequence analysis. However, due to highly variable evolutionary rates of substitution in ribosomal genes plus the existence of intragenomic variation at this locus, the relationships between and within foraminiferal classes remain uncertain. We analyze transcriptomic data from 28 species, adding 19 new species to the previously published dataset, including members …

Helical Remodeling Augments 5-Lipoxygenase Activity In The Synthesis Of Proinflammatory Mediators, Eden M. Gallegos, Tanner D. Reed, Forge A. Mathes, Nelson V. Guevara, David B. Neau, Wei Huang, Marcia E. Newcomer, Nathaniel C. Gilbert

School of Medicine Faculty Publications

The synthesis of proinflammatory leukotrienes implicated in asthma, allergic rhinitis, and atherosclerosis is initiated by the enzyme 5-lipoxygenase (5-LOX). The crystal structure of human Stable-5-LOX revealed a conformation where the catalytic iron was inaccessible to bulk solvent as two aromatic residues on a conserved helix-α2 (Hα2) plugged the substrate access portal. Whether 5-LOX can also adopt a more open conformation has not been resolved. Here, we present a new conformation of 5-LOX where Hα2 adopts an elongated conformation equivalent to that described in other animal lipoxygenase structures. Our observation of the sigmoidal kinetic behavior of 5-LOX, which is indicative of …

Trade-Offs Between Risks Of Predation And Starvation In Larvae Make The Shelf Break An Optimal Spawning Location For Atlantic Bluefin Tuna, Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Mandy Karnauskas, Victoria J. Coles, Estrella Malca, Raúl Laiz-Carrión, Øyvind Fiksen, Patricia Reglero, Akihiro Shiroza, José M. Quintanilla Hervas, Trika Gerard, John T. Lamkin, Michael R. Stukel

Faculty Publications

Atlantic bluefin tuna (ABT) (Thunnus thynnus) travel long distances to spawn in oligotrophic regions of the Gulf of Mexico (GoM) which suggests these regions offer some unique benefit to offspring survival. To better understand how larval survival varies within the GoM a spatially explicit, Lagrangian, individual-based model was developed that simulates dispersal and mortality of ABT early life stages within realistic predator and prey fields during the spawning periods from 1993 to 2012. The model estimates that starvation is the largest cumulative source of mortality associated with an early critical period. However, elevated predation on older larvae is …

Zoned Leasing Impact On Shellfish Aquaculture Industry Development, Rebekah Woodburn

All Theses And Dissertations

Shellfish aquaculture is a growing industry in the United States that supports many individuals and communities. An important step in establishing or growing a shellfish aquaculture operation is obtaining a lease in which to cultivate shellfish. While many states allow aquaculturists to find their own lease location, the often time-intensive and expensive process to have the lease approved and permitted can be a great barrier for new entrants to the industry. Zoned leasing is a way for state agencies to establish large areas and pre-approve them for shellfish aquaculture, then divide the areas into smaller parcels of leases to be …

Evaluation Of A Threonine Fermentation Product As A Digestible Threonine Source In Broilers, D. T. Lee, J. T. Lee, A. J. Ashworth, M. T. Kidd, A. Mauromostakos, S. J. Rochell

Poultry Science Faculty Publications and Presentations

In the present experiment, a Thr fermentation product (FP) (75% minimum digestible Thr) was evaluated as a replacement for crystalline L-Thr (98.5% minimum digestible Thr) as a source of digestible Thr and other nutrients to support broiler performance (0–48 d) and processing characteristics. Five phase-fed diets included 1) a positive control (PC) diet containing L-Met, L-Lys•HCl, and L-Thr, 2) a reduced protein control (RPC) diet with added L-Val, L-Ile, and L-Arg, 3) a negative control (NC) identical to the RPC except that cellulose was added at the expense of L-Thr, 4) a …

Proteome Of The Wood Decay Fungus Fomitopsis Pinicola Is Altered By Substrate, Grzegorz Sabat, Steven Ahrendt, Baojun Wu, Jill Gaskell, Benjamin W. Held, Cristina Toapanta, Thu V. Vuong, Anna Lipzen, Jiwei Zhang, Jonathan S. Schilling, Emma Master, Igor V. Grigoriev, Robert A. Blanchette, David S. Hibbett, Jennifer Bhatnagar, Daniel Cullen

Biology

The brown rot fungus Fomitopsis pinicola efficiently depolymerizes wood cellulose via the combined activities of oxidative and hydrolytic enzymes. Mass spectrometric analyses of culture filtrates identified specific proteins, many of which were differentially regulated in response to substrate composition.

Pestfacts Wa Issue 15 - September 2022, Svetlana Micic, Cindy L. Webster, Jean Galloway, Mark Seymour, Kithsiri Jayasena, Andrea Hills, Ciara Beard

PestFacts WA

PestFacts WA Issue 15 - September 2022 contents:

• Managing diamondback moths late in the season
• Chocolate spot in faba beans
• Loose smut in barley

Redox-Engineering Enhances Maize Thermotolerance And Grain Yield In The Field, Stuart A Sprague, Tej Man Tamang, Trevor Steiner, Qingyu Wu, Ying Hu, Tayebeh Kakeshpour, Jungeun Park, Jian Yang, Zhao Peng, Blake Bergkamp, Impa Somayanda, Morgan Peterson, Ely Oliveira Garcia, Yangfan Hao, Paul St Amand, Guihua Bai, Paul A Nakata, Ivo Rieu, David P Jackson, Ninghui Cheng, Barbara Valent, Kendal D Hirschi, Sv Krishna Jagadish, Sanzhen Liu, Frank F White, Sunghun Park

Children’s Nutrition Research Center Staff Publications

Increasing populations and temperatures are expected to escalate food demands beyond production capacities, and the development of maize lines with better performance under heat stress is desirable. Here, we report that constitutive ectopic expression of a heterologous glutaredoxin S17 from Arabidopsis thaliana (AtGRXS17) can provide thermotolerance in maize through enhanced chaperone activity and modulation of heat stress-associated gene expression. The thermotolerant maize lines had increased protection against protein damage and yielded a sixfold increase in grain production in comparison to the non-transgenic counterparts under heat stress field conditions. The maize lines also displayed thermotolerance in the reproductive stages, resulting in …

Skeleton Weed In Western Australia : Control Program 2022/23, Department Of Primary Industries And Regional Development, Western Australia

Bulletins 4000 -

No abstract provided.

The State Of Capacity Development Evaluation In Biodiversity Conservation And Natural Resource Management, Eleanor J. Sterling, Amanda Sigouin, Erin Betley, Jennifer Zavaleta Cheek, Jennifer N. Soloman, Kimberley Landrigan, Ana L. Porzecanski, Et. Al.

Natural Resource Management Faculty Publications

Capacity development is critical to long-term conservation success, yet we lack a robust and rigorous understanding of how well its effects are being evaluated. A comprehensive summary of who is monitoring and evaluating capacity development interventions, what is being evaluated and how, would help in the development of evidence-based guidance to inform design and implementation decisions for future capacity development interventions and evaluations of their effectiveness. We built an evidence map by reviewing peer-reviewed and grey literature published since 2000, to identify case studies evaluating capacity development interventions in biodiversity conservation and natural resource management. We used inductive and deductive …

Separating Proactive Conservation From Species Listing Decisions, Adrienne I. Kovach, Amanda E. Cheeseman, Joathan B. Cohen, Chadwick D. Rittenhouse, Christopher M. Whipps

Natural Resource Management Faculty Publications

Proactive Conservation is a paradigm of natural resource management in the United States that encourages voluntary, collaborative efforts to restore species before they need to be protected through government regulations. This paradigm is widely used to conserve at-risk species today, and when used in conjunction with the Policy for Evaluation of Conservation Efforts (PECE), it allows for successful conservation actions to preclude listing of species under the Endangered Species Act (ESA). Despite the popularity of this paradigm, and recent flagship examples of its use (e.g., greater sage grouse, Centrocercus urophasianus), critical assessments of the outcomes of Proactive Conservation are lacking …

Patch-Burn Grazing Impacts Forage Resources In Subtropical Humid Grazing Lands, Elizabeth H. Boughton, Nuria Gomez-Casanovas, Hilary Swain, Carl Bernacchi, Raoul K. Boughton, Keith Brinsko, Haoyu Li, Alan Rivero, Evan H. Delucia, Jed Sparks

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Subtropical humid grazing lands represent a large global land use and are important for livestock production, as well as supplying multiple ecosystem services. Patch-burn grazing (PBG) management is applied in temperate grazing lands to enhance environmental and economic sustainability; however, this management system has not been widely tested in subtropical humid grazing lands. The objective of this study was to determine how PBG affected forage resources, in comparison with the business-as-usual full-burn (FB) management in both intensively managed pastures (IMP) and seminative (SN) pastures in subtropical humid grazinglands. We hypothesized that PBG management would create patch contrasts in forage quantity …

Exploring Metapopulation-Scale Suppression Alternatives For A Global Invader In A River Network Experiencing Climate Change, Brian D. Healy, Phaedra Budy, Charles B. Yackulic, Brendan P. Murphy, Robert C. Schelly, Mark C. Mckinstry

Wildland Resources Faculty Publications

Invasive species can dramatically alter ecosystems, but eradication is difficult, and suppression is expensive once they are established. Uncertainties in the potential for expansion and impacts by an invader can lead to delayed and inadequate suppression, allowing for establishment. Metapopulation viability models can aid in planning strategies to improve responses to invaders and lessen invasive species’ impacts, which may be particularly important under climate change. We used a spatially-explicit metapopulation viability model to explore suppression strategies for ecologically-damaging invasive brown trout (Salmo trutta), established in the Colorado River and a tributary within Grand Canyon National Park. Our goals …

Methods For Bioconjugation Of Biochemical Sensors Based On Metallic Nanoparticles, Jacob Rolin

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Assessing Biochemistry Students’ Use Of Metabolic Pathway Entities, Nina Fortier

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.