Life Sciences Commons^™

The Reliability Of Three-Dimensional Inertial Measurement Units In Capturing Lower-Body Joint Kinematics During Single-Leg Landing Tasks, Jacob M. Thomas, Roger O. Kollock

International Journal of Exercise Science

International Journal of Exercise Science 15(1): 1306-1316, 2022. 3-D inertial measurement units (IMUs) have advantages over other types of motion capture systems, as IMUs cannot be obstructed by equipment and gear. Therefore, the purpose of this study was to assess the reliability of IMUs in measuring joint angles at the hip, knee, and ankle during two types of single-leg landings: 1) drop-landing (DL) and 2) leap-landing (LL). Nineteen subjects, both males (n = 9, 21.88 ± 1.64 yrs, 178.36 ± 9.68 cm, 185.68 ± 16.63 kg) and females (n = 11, 22.45 ± 4.32 yrs, 171.57 ± 6.55 …

The Impact Of Covid-19 Pandemic On Undergraduate Students’ Interest In The Stem Field, Zaheen Rashed '24, Yuchen Jiang, Zimo Ma, Pamela M. Propsom

Annual Student Research Poster Session

The deadly consequences of COVID-19 have been well documented, as have the social, emotional, and cognitive effects. These sequelae extend to the educational system. Much less investigated have been the potential positive outcomes of the pandemic. Given that STEM education relies heavily on hands-on laboratory experiences, STEM students may have been especially impacted by pandemic-imposed remote instruction. We surveyed 392 students at one liberal arts college querying why they continue studying in STEM or leave the STEM disciplines. Because the literature indicates that people of color and those from lower socioeconomic groups were more negatively affected by COVID-19, we hypothesized …

Lineage-Coupled Clonal Capture Identifies Clonal Evolution Mechanisms And Vulnerabilities Of Braf, Ze-Yan Zhang, Yingwen Ding, Ravesanker Ezhilarasan, Tenzin Lhakhang, Qianghu Wang, Jie Yang, Aram S Modrek, Hua Zhang, Aristotelis Tsirigos, Andrew Futreal, Giulio F Draetta, Roel G W Verhaak, Erik P Sulman

Faculty Research 2022

Targeted cancer therapies have revolutionized treatment but their efficacies are limited by the development of resistance driven by clonal evolution within tumors. We developed "CAPTURE", a single-cell barcoding approach to comprehensively trace clonal dynamics and capture live lineage-coupled resistant cells for in-depth multi-omics analysis and functional exploration. We demonstrate that heterogeneous clones, either preexisting or emerging from drug-tolerant persister cells, dominated resistance to vemurafenib in BRAF

Above- And Belowground Responses To Environmental Change In The Northern Chihuahuan Desert, Renée Françoise Brown

Biology ETDs

Drylands cover 45% of the terrestrial surface and are expanding rapidly due to anthropogenic drivers. Altered precipitation regimes, atmospheric nitrogen deposition, and wildfire will likely have significant consequences in these regions where ecological processes are limited by water and nitrogen. In this dissertation, I explored temporal dynamics of net primary production (NPP) and related above- and belowground processes under several environmental change drivers in the Sevilleta National Wildlife Refuge, central New Mexico, USA. Located in the northern Chihuahuan Desert, this region experiences strong seasonal precipitation patterns driven by the North American Monsoon, historically characterized by frequent small rain events hypothesized …

Introduction To Common Molecular Biological Techniques Used In Research Laboratories, Dington Tan, Ruitang Deng, Winifer Ali, Qiwen Chen

Annual Student Research Poster Session

The main techniques used in molecular biology are cloning, PCR (Polymerase Chain Reaction), nucleic acid electrophoresis, DNA microarray analysis, in situ hybridization (HIS), sequencing (Sanger or Next Generation Sequencing (NGS)). Molecular biology techniques are extremely valuable for addressing a wide range of issues impacting the general state of humanity, in addition to investigating fundamental scientific concerns. Applications for molecular biology techniques include the prevention and treatment of disease, the creation of new protein products, and the modification of plants and animals to produce desired phenotypic traits.

Latex Induction And Effects Of Herbivory On Apocynum Cannabinum, Shiley Claypool, Tim Douglas, Rose Keith

Annual Student Research Poster Session

Apocynum cannabinum, also known as hemp dogbane, is a species of perennial native to the U.S. This species has been found to be extremely plastic, meaning that its environment has significant effects on its phenotypic traits (Ransom et al. 1998). Plant-herbivore interactions, such as herbivory, can drive this plasticity. One of these responses includes the induction of Latex, a white sappy fluid that exits leaves and stems induced by damage (Agrawal and Konno 2009). This project investigates the effects of early-season vs. late-season herbivory on hemp dogbane, as well as how latex induction is influenced by these plant-herbivore interactions.

Inhibiting S100Β And Troubleshooting Cell Growth, Animesh Dali, Suhana Basnyat, Robert Passarelli, Nipun Chopra

Annual Student Research Poster Session

S100B is a protein that is upregulated in neuronal injury. The upregulation of S100B has been observed to start multiple cascades that result in neuronal death. The inhibition of S100B would be a promising treatment for neuronal injury. In our research, we attempt to do exactly so.

Investigating Conflicts In Mind Wandering And Neural Oscillation Studies, Mahnoor Zahid, Robert West

Annual Student Research Poster Session

When presented with a repetitive or an undemanding task, our mind tends to disengage from the external environment to focus on the inner trains of thought. This phenomenon, commonly known as "zoning out" is termed as Mind Wandering. Across various literature', this effect has been mainly studied under two states: while performing a low-demand task, or under a meditative state. Neural oscillations such as alpha, beta, delta and theta waves were studied to observe varying effects of mind wandering and to distinguish how and when a human mind goes into this state. It was hypothesized that one wave would prove …

Joint Angle Variability Is Altered In Patients With Peripheral Artery Disease After Six Months Of Exercise Intervention, Farah Fallahtafti, Zahra Salamifar, Mahdi Hassan, Hafizur Rahman, Iraklis Pipinos, Sara A. Myers

Journal Articles

Supervised exercise therapy (SET) is a conservative non-operative treatment strategy for improving walking performance in patients with peripheral artery disease (PAD). Gait variability is altered in patients with PAD, but the effect of SET on gait variability is unknown. Forty-three claudicating patients with PAD underwent gait analysis before and immediately after a 6-month SET program. Nonlinear gait variability was assessed using sample entropy, and the largest Lyapunov exponent of the ankle, knee, and hip joint angle time series. Linear mean and variability of the range of motion time series for these three joint angles were also calculated. Two-factor repeated measure …

Biogenesis And Regulatory Roles Of Circular Rnas, Li Yang, Jeremy E Wilusz, Ling-Ling Chen

Children’s Nutrition Research Center Staff Publications

Covalently closed, single-stranded circular RNAs can be produced from viral RNA genomes as well as from the processing of cellular housekeeping noncoding RNAs and precursor messenger RNAs. Recent transcriptomic studies have surprisingly uncovered that many protein-coding genes can be subjected to backsplicing, leading to widespread expression of a specific type of circular RNAs (circRNAs) in eukaryotic cells. Here, we discuss experimental strategies used to discover and characterize diverse circRNAs at both the genome and individual gene scales. We further highlight the current understanding of how circRNAs are generated and how the mature transcripts function. Some circRNAs act as noncoding RNAs …

Bird Species Define The Relationship Between West Nile Viremia And Infectiousness To Culex Pipiens Mosquitoes, Jefferson A. Vaughan, Robert Newman, Michael J. Turrell

Biology Faculty Publications

The transmission cycle of West Nile virus (WNV) involves multiple species of birds. The relative importance of various bird species to the overall transmission is often inferred from the level and duration of viremia that they experience upon infection. Reports utilizing in vitro feeding techniques suggest that the source and condition of blood in which arboviruses are fed to mosquitoes can significantly alter the infectiousness of arbovirus to mosquitoes. We confirmed this using live hosts. A series of mosquito feedings with Culex pipiens was conducted on WNV-infected American robins and common grackles over a range of viremias. Mosquitoes were assayed …

Response Of Soil Bacterial Diversity, Predicted Functions And Co-Occurrence Patterns To Nanoceria And Ionic Cerium Exposure, Jie Zhang, Hui Sheng, Yan-Meng Shang, Jamie Lead, Zhang-Zhen Guo, Jian-Ping Hong

Faculty Publications

Release of nanoceria (nCeO₂) into the environment has caused much concern about its potential toxicity, which still remains poorly understood for soil microorganisms. In this study, nanoceria and cerium (III) nitrate at different doses (10, 100 and 500 mg/kg) were applied to bok choy (Brassica rapa subsp. chinensis), grown in potting soil, to investigate the responses of soil bacterial communities to nanoceria (NC) and ionic cerium (IC) applications. The results showed that bacterial richness was slightly increased in all cerium treatments relative to the negative control without cerium amendment (CK), but a significant increase was only found in …

Role Of Bifidobacterium Pseudocatenulatum In Degradation And Consumption Of Xylan-Derived Carbohydrates, Elizabeth Drey, Car Reen Kok, Robert Hutkins

Department of Food Science and Technology: Faculty Publications

Xylans, a family of xylose-based polysaccharides, are dietary fibers resistant to digestion. They therefore reach the large intestine intact; there, they are utilized by members of the gut microbiota. They are initially broken down by primary degraders that utilize extracellular xylanases to cleave xylan into smaller oligomers. The resulting xylooligosaccharides (XOS) can either be further metabolized directly by primary degraders or cross-feed secondary consumers, including Bifidobacterium. While several Bifidobacterium species have metabolic systems for XOS, most grow poorly on longer- chain XOS and xylan substrates. In this study, we isolated strains of Bifidobacterium pseudocatenulatum and observed that some, including …

Tips To Encourage A Healthy Body Image In Your Child, Megan Jensen, Mateja R. Savoie-Roskos, Jaqueline Neid-Avila, Brittany Bingeman

All Current Publications

This fact sheet explores a variety of ways to encourage a healthy body image in both you and your child.

The Genomic And Bulked Segregant Analysis Of Curcuma Alismatifolia Revealed Its Diverse Bract Pigmentation, Xuezhu Liao, Yuanjun Ye, Xiaoni Zhang, Dan Peng, Mengmeng Hou, Gaofei Fu, Jianjun Tan, Jianli Zhao, Rihong Jiang, Yechun Xu, Jinmei Liu, Jinliang Yang, Wusheng Liu, Luke R. Tembrock, Genfa Zhu, Zhiqiang Wu

Department of Agronomy and Horticulture: Faculty Publications

Compared with most flowers where the showy part comprises specialized leaves (petals) directly subtending the reproductive structures, most Zingiberaceae species produce showy ‘‘flowers’’ through modifications of leaves (bracts) subtending the true flowers throughout an inflorescence. Curcuma alismatifolia, belonging to the Zingiberaceae family, a plant species originating from Southeast Asia, has become increasingly popular in the flower market worldwide because of its varied and esthetically pleasing bracts produced in different cultivars. Here, we present the chromosome-scale genome assembly of C. alismatifolia ‘‘Chiang Mai Pink’’ and explore the underlying mechanisms of bract pigmentation. Comparative genomic analysis revealed C. alismatifolia contains a …

The Effect Of Infection Risk On Female Blood Transcriptomics, Brenna M. G. Gormally, Patricia C. Lopes

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Defenses against pathogens can take on many forms. For instance, behavioral avoidance of diseased conspecifics is widely documented. Interactions with these infectious conspecifics can also, however, lead to physiological changes in uninfected animals, an effect that is much less well understood. These changes in behavior and physiology are particularly important to study in a reproductive context, where they can impact reproductive decisions and offspring quality. Here, we studied how an acute (3 h) exposure to an immune-challenged male affected female blood transcriptomics and behavior. We predicted that females paired with immune-challenged males would reduce eating and drinking behaviors (as avoidance …

Lineage-Coupled Clonal Capture Identifies Clonal Evolution Mechanisms And Vulnerabilities Of Brafv600e Inhibition Resistance In Melanoma, Ze-Yan Zhang, Yingwen Ding, Ravesanker Ezhilarasan, Tenzin Lhakhang, Qianghu Wang, Aram S Modrek, Aristotelis Tsirigos, Andrew Futreal, Giulio F Draetta, Roel G W Verhaak, Erik P Sulman

Faculty, Staff and Student Publications

Targeted cancer therapies have revolutionized treatment but their efficacies are limited by the development of resistance driven by clonal evolution within tumors. We developed "CAPTURE", a single-cell barcoding approach to comprehensively trace clonal dynamics and capture live lineage-coupled resistant cells for in-depth multi-omics analysis and functional exploration. We demonstrate that heterogeneous clones, either preexisting or emerging from drug-tolerant persister cells, dominated resistance to vemurafenib in BRAF

Feasibility Of A Novel Non-Invasive Swab Technique For Serial Whole-Exome Sequencing Of Cervical Tumors During Chemoradiation Therapy, Julianna K Bronk, Chiraag Kapadia, Xiaogang Wu, Bhavana V Chapman, Rui Wang, Xingzhi Song, Jianhua Zhang, Ann H Klopp, Lauren E Colbert

Faculty, Staff and Student Publications

BACKGROUND: Clinically relevant genetic predictors of radiation response for cervical cancer are understudied due to the morbidity of repeat invasive biopsies required to obtain genetic material. Thus, we aimed to demonstrate the feasibility of a novel noninvasive cervical swab technique to (1) collect tumor DNA with adequate throughput to (2) perform whole-exome sequencing (WES) at serial time points over the course of chemoradiation therapy (CRT).

METHODS: Cervical cancer tumor samples from patients undergoing chemoradiation were collected at baseline, at week 1, week 3, and at the completion of CRT (week 5) using a noninvasive swab-based biopsy technique. Swab samples were …

Lineage-Coupled Clonal Capture Identifies Clonal Evolution Mechanisms And Vulnerabilities Of Braf V600e Inhibition Resistance In Melanoma, Ze-Yan Zhang, Yingwen Ding, Ravesanker Ezhilarasan, Tenzin Lhakhang, Qianghu Wang, Aram S Modrek, Aristotelis Tsirigos, Andrew Futreal, Giulio F Draetta, Roel G W Verhaak, Erik P Sulman

Faculty, Staff and Student Publications

Targeted cancer therapies have revolutionized treatment but their efficacies are limited by the development of resistance driven by clonal evolution within tumors. We developed "CAPTURE", a single-cell barcoding approach to comprehensively trace clonal dynamics and capture live lineage-coupled resistant cells for in-depth multi-omics analysis and functional exploration. We demonstrate that heterogeneous clones, either preexisting or emerging from drug-tolerant persister cells, dominated resistance to vemurafenib in BRAFV600E melanoma. Further integrative studies uncovered diverse resistance mechanisms. This includes a previously unrecognized and clinically relevant mechanism, chromosome 18q21 gain, which leads to vulnerability of the cells to BCL2 inhibitor. We also identified targetable …

Wellness Review 2022, Part 1, Martin Huecker, Brian A. Ferguson, Jacob Shreffler

Journal of Wellness

Introduction: This article represents the first of a two-part assessment of 2022 literature addressing wellness in healthcare professionals published from January 1, 2022 to June 30, 2022.

Methods: Three editors conducted a similar keyword search in Pubmed, also adding manually curated articles. Focusing chiefly on clinical trials and other prospective research, we settled on a final 25 significant papers focusing on wellness in medical professionals to include in this review.

Literature Review: Recent literature into HCW wellness continues to describe burnout factors and COVID-19 impact, but includes more resilience-targeting interventions and systematic reviews of trials seeking bolstering of well-being. Subsections …

The Effects Of Exercise Training On Glucose Homeostasis And Muscle Metabolism In Type 1 Diabetic Female Mice, Caitlin O'Neill, Erica J. Locke, Darren A. Sipf, Jack Thompson, Erin Drebushenko, Nate Berger, Brooke Segich, Stephen C. Kolwicz Jr.

Health Sciences Faculty Publications

Although exercise training is an important recommendation for the management of type 1 diabetes (T1D), most of the available research studies predominantly focus on male subjects. Given the importance of sex as a biological variable, additional studies are required to improve the knowledge gap regarding sex differences in T1D research. Therefore, the purpose of this study was to examine the role of exercise training in mediating changes in glucose homeostasis and skeletal muscle metabolism in T1D female mice. Female mice were injected with streptozotocin (STZ) to induce T1D. Two weeks after STZ injection, control (CON) and STZ mice were exercise …

Psychophysiological Effects Of Increasing Awareness Of Nondual Consciousness In Young Adults With Depression And Anxiety, Milena Braticevic

CONSCIOUSNESS: Ideas and Research for the Twenty-First Century

Young adults increasingly suffer from anxiety and depression during the time of transition into adulthood. This research study examined the effects of increasing awareness of nondual consciousness in young adults who were experiencing various levels of anxiety and depression. The methodology was mixed-method and included four 1-hour group-based sessions over 4 weeks. Increasing awareness of nondual consciousness through educational, experiential, and behavioural components resulted in reduction in the average depression score from 19.4 (borderline clinical depression) to 10 (normal), and reduction in the average anxiety score from 12.7 (moderate anxiety) to 6.9 (mild). Participants reported increased mental, emotional, physical, and …

Élimination Des Vapeurs Toxiques Par Oxydation : Développement De Procédures D'Évaluation Des Systèmes De Purification De L'Air Des Conduits De Ventilation, Chang-Seo Lee, Fariborz Haghighat, Alireza Haghighat Mamaghani, Zahra Shayegan, Ali Bahloul, Mélanie Huard, Lexuan Zhong, Mitra Bahr

Rapports de recherche scientifique

L'exposition à des composés organiques volatils (COV) dans les lieux de travail peut avoir des effets aigus, notamment sous forme d'irritation de la peau, des yeux, de la bouche et du nez. Certains produits peuvent également provoquer des effets chroniques, comme l'asthme et le cancer. La prévention de tels effets nocifs sur la santé des travailleurs par l'adoption et la mise en œuvre de mesures visant à en éliminer ou à tout le moins réduire le risque s'avère importante. Parmi les approches développées à ce jour pour réduire l'exposition aux polluants de l'air intérieur – dont les COV –, la …

Removal Of Toxic Vapors By Oxidation: Development Of Laboratory Test Procedures For In-Duct Air Cleaning Systems, Chang-Seo Lee, Fariborz Haghighat, Alireza Haghighat Mamaghani, Zahra Shayegan, Ali Bahloul, Mélanie Huard, Lexuan Zhong, Mitra Bahr

Rapports de recherche scientifique

L'exposition à des composés organiques volatils (COV) dans les lieux de travail peut avoir des effets aigus, notamment sous forme d'irritation de la peau, des yeux, de la bouche et du nez. Certains produits peuvent également provoquer des effets chroniques, comme l'asthme et le cancer. La prévention de tels effets nocifs sur la santé des travailleurs par l'adoption et la mise en œuvre de mesures visant à en éliminer ou à tout le moins réduire le risque s'avère importante. Parmi les approches développées à ce jour pour réduire l'exposition aux polluants de l'air intérieur – dont les COV –, la …

Assisted Migration Is Plausible For A Boreal Tree Species Under Climate Change: A Quantitative And Population Genetics Study Of Trembling Aspen (Populus Tremuloides Michx.) In Western Canada, Chen Ding, Jean S. Brouard

Aspen Bibliography

A novel method was tested for improving tree breeding strategies that integrate quantitative and population genetics based on range-wide reciprocal transplant experiments. Five reciprocal common garden tests of Populus tremuloides were investigated including 6450 trees across western Canada focusing on adaptation traits and growth. Both genetic parameters and home-site transplant models were evaluated. We found a genetic trade-off between growth and early spring leaf flush and late fall senescence. Coefficients of phenotypic variation (CVp) of cell lysis (CL), a measure of freezing injury, shrank from 0.28 to 0.10 during acclimation in the fall, and the CVp slope versus …

A Spectral Three-Dimensional Color Space Model Of Tree Crown Health, William B. Monahan, Colton E. Arnspiger, Parth Bhatt, Zhongming An, Frank J. Krist, Tao Liu, Robert P. Richard, Curtis Edson, Robert E. Froese, John Steffenson, Tony C. Lammers, Randy Frosh

Michigan Tech Publications, Part 1

Protecting the future of forests in the United States and other countries depends in part on our ability to monitor and map forest health conditions in a timely fashion to facilitate management of emerging threats and disturbances over a multitude of spatial scales. Remote sensing data and technologies have contributed to our ability to meet these needs, but existing methods relying on supervised classification are often limited to specific areas by the availability of imagery or training data, as well as model transferability. Scaling up and operationalizing these methods for general broadscale monitoring and mapping may be promoted by using …

Complement Component C4 Structural Variation And Quantitative Traits Contribute To Sex-Biased Vulnerability In Systemic Sclerosis, Shervin Assassi, Susanna M Proudman, Mandana Nikpour, Nicolas Hunzelmann, Gianluca Moroncini, Jeska K De Vries-Bouwstra, Gisela Orozco, Anne Barton, Ariane L Herrick, Chikashi Terao, Yannick Allanore, Carmen Fonseca, Marta Eugenia Alarcón-Riquelme, Timothy R D J Radstake, Lorenzo Beretta, Christopher P Denton, Maureen D Mayes, Javier Martin

Faculty, Staff and Student Publications

Copy number (CN) polymorphisms of complement C4 play distinct roles in many conditions, including immune-mediated diseases. We investigated the association of C4 CN with systemic sclerosis (SSc) risk. Imputed total C4, C4A, C4B, and HERV-K CN were analyzed in 26,633 individuals and validated in an independent cohort. Our results showed that higher C4 CN confers protection to SSc, and deviations from CN parity of C4A and C4B augmented risk. The protection contributed per copy of C4A and C4B differed by sex. Stronger protection was afforded by C4A in men and by C4B in women. C4 CN correlated well with its …

Don't Let The Past Sink Your Future, Timothy Meyer

Cornhusker Economics

Decision scientists have many algorithms for making decisions. These algorithms can be qualitative and subjective, such as following a 7-step process, to highly quantitative procedures like minimax regret, or linear programming. These techniques are very different from each other, but in one way they are very similar; they never, ever suggest the manager become emotional and use past decisions to guide the future.

Past decisions and events should guide decision-making. They help managers assign probabilities as well assessing performance. Viewing these events and situations as permanent paths is where sunk costs become problematic.

Includes discussions of four scenarios.

The Boring Schwann Cells: Tumor Me-Tast-Asis Along Nerves, Moran Amit, Anirban Maitra

Faculty, Staff and Student Publications

Perineural spread is an ominous feature of cancer. Here, Deborde and colleagues describe for the first time the biophysical coupling driving this route of tumor spread and the role of Schwann cell activation in the mobilization of cancer cells within and along the tumor-associated nerves. See related article by Deborde et al., p. 2454 (8).

Identification Of Minimum Essential Therapeutic Mixtures From Cannabis Plant Extracts By Screening In Cell And Animal Models Of Parkinson’S Disease, Michael G Morash, Jessica Nixon, Lori M N Shimoda, Helen Turner, Alexander J Stokes, Lee D Ellis

Faculty, Staff and Student Publications

Medicinal cannabis has shown promise for the symptomatic treatment of Parkinson's disease (PD), but patient exposure to whole plant mixtures may be undesirable due to concerns around safety, consistency, regulatory issues, and psychoactivity. Identification of a subset of components responsible for the potential therapeutic effects within cannabis represents a direct path forward for the generation of anti-PD drugs. Using an