Life Sciences Commons^™

Macroecological Patterns Of Frugivorous Fishes’ Diversity (Serrasalmidae) In The Amazon Drainage Basin, Karold Vivianna Coronado Franco

Theses and Dissertations

The Amazon River drainage basin is known as the most biodiverse region in the world. Regarding freshwater fish, this region contains around 15% of the world's fish richness. The fish family Serrasalmidae have a variety of feeding preferences including Pacus (herbivores) and Piranhas (carnivores). Fruit eating fish species are evolutionarily the oldest species in the family and have a mutualistic interaction with flooded forests. Considering the diversity of feeding habits of the Serrasalmidae family, it represents an excellent model to study ecological questions related to factors that influence the spatial distribution of species and factors that contribute to the maintenance …

Predict Validity For Prognosis Of Breast Cancer Patients With Pathogenic Brca1/2 Variants, Taru A Muranen, Anna Morra, Sofia Khan, Daniel R Barnes, Manjeet K Bolla, Joe Dennis, Renske Keeman, Goska Leslie, Michael T Parsons, Qin Wang, Thomas U Ahearn, Kristiina Aittomäki, Irene L Andrulis, Banu K Arun, Sabine Behrens, Katarzyna Bialkowska, Stig E Bojesen, Nicola J Camp, Jenny Chang-Claude, Kamila Czene, Peter Devilee, Susan M Domchek, Alison M Dunning, Christoph Engel, D Gareth Evans, Manuela Gago-Dominguez, Montserrat García-Closas, Anne-Marie Gerdes, Gord Glendon, Pascal Guénel, Eric Hahnen, Ute Hamann, Helen Hanson, Maartje J Hooning, Reiner Hoppe, Louise Izatt, Anna Jakubowska, Paul A James, Vessela N Kristensen, Fiona Lalloo, Geoffrey J Lindeman, Arto Mannermaa, Sara Margolin, Susan L Neuhausen, William G Newman, Paolo Peterlongo, Kelly-Anne Phillips, Miquel Angel Pujana, Johanna Rantala, Karina Rønlund, Emmanouil Saloustros, Rita K Schmutzler, Andreas Schneeweiss, Christian F Singer, Maija Suvanto, Yen Yen Tan, Manuel R Teixeira, Mads Thomassen, Marc Tischkowitz, Vishakha Tripathi, Barbara Wappenschmidt, Emily Zhao, Douglas F Easton, Antonis C Antoniou, Georgia Chenevix-Trench, Paul D P Pharoah, Marjanka K Schmidt, Carl Blomqvist, Heli Nevanlinna

Faculty, Staff and Student Publications

We assessed the PREDICT v 2.2 for prognosis of breast cancer patients with pathogenic germline BRCA1 and BRCA2 variants, using follow-up data from 5453 BRCA1/2 carriers from the Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA) and the Breast Cancer Association Consortium (BCAC). PREDICT for estrogen receptor (ER)-negative breast cancer had modest discrimination for BRCA1 carrier patients overall (Gönen & Heller unbiased concordance 0.65 in CIMBA, 0.64 in BCAC), but it distinguished clearly the high-mortality group from lower risk categories. In an analysis of low to high risk categories by PREDICT score percentiles, the observed mortality was consistently lower than …

Home-Site Advantage For Host Species–Specific Gut Microbiota, Daniel D. Sprockett, Jeff Price, Anthony Juritsch, Robert J. Schmaltz, Madalena V. F. Real, Samantha L. Goldman, Michael Sheehan, Amanda E. Ramer-Tait, Andrew H. Moeller

Department of Nutrition and Health Sciences: Faculty Publications

Mammalian species harbor compositionally distinct gut microbial communities, but the mechanisms that maintain specificity of symbionts to host species remain unclear. Here, we show that natural selection within house mice (Mus musculus domesticus) drives deterministic assembly of the house-mouse gut microbiota from mixtures of native and non-native microbiotas. Competing microbiotas from wild-derived lines of house mice and other mouse species (Mus and Peromyscus spp.) within germ-free wild-type (WT) and Rag1-knockout (Rag1^−/−) house mice revealed widespread fitness advantages for native gut bacteria. Native bacterial lineages significantly outcompeted non-native lineages in both WT and Rag1 …

Common Signaling Pathways Involved In Alzheimer's Disease And Stroke: Two Faces Of The Same Coin, Tushar Kanti Das, Bhanu Priya Ganesh, Kaneez Fatima-Shad

Faculty, Staff and Student Publications

Alzheimer's disease (AD) and stroke are two interrelated neurodegenerative disorders which are the leading cause of death and affect the neurons in the brain and central nervous system. Although amyloid-β aggregation, tau hyperphosphorylation, and inflammation are the hallmarks of AD, the exact cause and origin of AD are still undefined. Recent enormous fundamental discoveries suggest that the amyloid hypothesis of AD has not been proven and anti-amyloid therapies that remove amyloid deposition have not yet slowed cognitive decline. However, stroke, mainly ischemic stroke (IS), is caused by an interruption in the cerebral blood flow. Significant features of both disorders are …

The Influence Of Nutrition On The Gut Microbiota And Psychiatric Disorders: A Review, Megha Bhagavan, Francis Jenney

Research Day

The symbiotic harboring of gut microorganisms within the gastrointestinal tract has a profound influence on host physiology, well-being, and disease pathology. More specifically, the gut bacteria are able to interact with dietary components from foods chosen by the host and consequently relay their beneficial or precarious effects locally and systemically. The gut bacteria have the capacity to maintain a healthy gut microbiome or perpetuate intestinal imbalance, known as gut dysbiosis. Gut dysbiosis has both local effects in gastrointestinal pathologies, such as intestinal bowel syndrome (IBS) and intestinal bowel disorder (IBD), as well as systemic pathologies, such as type II diabetes, …

Drug Ideologies Of The United States, Macy Montgomery

Helm's School of Government Conference - 2021-2024

The United States has been increasingly creating lenient drug policies. Seventeen states and Washington, the District of Columbia, legalized marijuana, and Oregon decriminalized certain drugs, including methamphetamine, heroin, and cocaine. The medical community has proven that drugs, including marijuana, have myriad adverse health side effects. This leads to two questions: Why does the United States government continue to create lenient drug policies, and what reasons do citizens give for legalizing drugs when the medical community has proven them harmful? The paper hypothesizes that the disadvantages of drug legalization outweigh its benefits because of the numerous harms it causes, such as …

Mechanistic Examination Of Protist-Mediated Plant Growth Through The Comparative Development Of Medicago Truncatula, Shane Connolly

University Scholar Projects

Protists are known to increase plant growth through two main mechanisms: the microbial loop and the alteration of the root microbiome. The microbial loop is a nutrient recycling method in which protists provide inorganic nitrogen ions to the plant. Alteration of root microbiome leads to the removal of plant pathogens and shifting communities towards plant growth-promoting bacteria (PGPB). This study aimed to elicit which mechanism could produce the largest boost in shoot weight for Medicago truncatula. A series of microcosm experiments were explored in which M. truncatula was grown with variable microbiome structures to allow for mechanism differentiation. The …

Cenabis Bene: A Culinary Odyssey Through Apicius, Kathryn Atkinson

University Scholar Projects

Apicius is the sole surviving cookbook from classical antiquity; as such it is invaluable for what it tells us about ancient feasting customs. Yet the gluttony typically associated with classical antiquity has no place in Apicius beyond the art that is inherently associated with food; we are not so much given a seat at the cena (dinner) as we are led into the kitchen, handed an apron, and instructed to cook. This critical analysis explores each recipe not only on the surface—i.e., examining the ingredients and recreating selected recipes—but also on a deeper level, lifting food above its concrete reality …

Synecological Response Of Spring Benthic Prokaryotes And Macroinvertebrates To Paleozoic Roof Pendant-Derived Calcium, Ariel D. Friel, Khaled Pordel, Zachary Meyers, Cale O. Seymour, Nicole J. Thomas, Fred M. Phillips, Jeffrey R. Knott, Donald W. Sada, Laura Rademacher, Marty Frisbee, Brian P. Hedlund

Pacific Faculty Work

Despite the ecological significance of desert springs, little is known about relationships between spring hydrogeochemistry and ecology, particularly over multiple trophic levels. Here, we surveyed microbial communities (bacteria and archaea) and benthic macroinvertebrate (BMI) communities in springs that recharge through granitoid bedrock in Owens Valley, CA, to determine whether subtle geochemical differences imparted by metamorphosed roof pendant weathering in the source area affect spring ecosystems. Relative to other springs, roof-pendant-recharged springs were characterized by elevated (1) Ca²⁺/Na⁺, Ca²⁺/Mg²⁺, and divalent/monovalent cation ratios, (2) relative abundance of taxa inferred to be benthic aerobes …

The Last Of Us In Therapy: How Mind-Controlling Fungi And Gut Bacteria Affect Your Mental Health, Anastasia Lyon

Journal of Pharmacology & Nutritional Sciences

The "psilocybiome" represents the mutually beneficial relationship between ourselves, our bacteria, and psychedelic drugs. This short review briefly discusses the benefits and limitations surrounding the potential for psychedelic therapy to synergize with gut bacteria to help regulate and maintain proper balance in the immune system, diet, and stress levels. Psychedelic therapy is a novel treatment strategy that has the potential to improve patient mental health, and, by identifying the types of gut bacteria present in patients, it can aid in personalizing medicine by determining how well their "psilocybiome" may respond.

Synecological Response Of Spring Benthic Prokaryotes And Macroinvertebrates To Paleozoic Roof Pendant-Derived Calcium, Ariel D. Friel, Khaled Pordel, Zachary Meyers, Cale O. Seymour, Nicole J. Thomas, Fred M. Philips, Jeffrey R. Knott, Donald W. Sada, Laura Rademacher, Marty Frisbee, Brian P. Hedlund

Life Sciences Faculty Research

Despite the ecological significance of desert springs, little is known about relationships between spring hydrogeochemistry and ecology, particularly over multiple trophic levels. Here, we surveyed microbial communities (bacteria and archaea) and benthic macroinvertebrate (BMI) communities in springs that recharge through granitoid bedrock in Owens Valley, CA, to determine whether subtle geochemical differences imparted by metamorphosed roof pendant weathering in the source area affect spring ecosystems. Relative to other springs, roof-pendant-recharged springs were characterized by elevated (1) Ca2+/Na+, Ca2+/Mg2+, and divalent/monovalent cation ratios, (2) relative abundance of taxa inferred to be benthic aerobes and prosthecate/stalked bacteria, and (3) abundance and diversity …

Coloration Of Western Alaskan Lakes From Spectral Data Correlates With Environmental Factors, Annemarie Timling

Undergraduate University Honors Capstones

The Yukon Kuskokwim Delta region of Alaska consists of over 100,000 small lakes; it is one of the largest lake-dense regions of Alaska. These small lakes are critical aquatic ecosystems that provide habitats for wildlife and play an important role in carbon and nutrient cycling. Lakes in the Yukon Kuskokwim Delta have a wide range of visible and near-infrared satellite spectra, which can vary over small spatial scales. These spectral differences may provide insight into the environmental properties of these small shallow lakes. Therefore, we want to investigate the relationship between the spectral data and environmental differences in these lakes. …

Human Trafficking And Nutrition: Assessing The Effects Of U.S. Public Policy On Food Security And The Malnourishment Of Refugees, Moxie R. Mccandless

Honors Projects

This research paper aims to assess the challenges associated with human trafficking within the lived experience of refugees, specifically focusing on food security, and the resulting system shaped by existing United States policies and programs. By examining this complex relationship, the study seeks to shed light on the influence of power dynamics on fulfilling basic human needs and to propose more effective strategies for improving food security among marginalized populations.

A comprehensive literature review is conducted, and a community nutrition needs assessment is performed in King County, Washington. Qualitative interviews are conducted with human trafficked organizations, government officials, and experts …

Effects Of Increased Shoe Collar Height And Limb Dominance On Landing Knee Biomechanics In Collegiate Volleyball Players, Lindsey Legg

Master's Theses

Athletic footwear with higher collar heights are worn to restrict ankle motion. Reduced ankle dorsiflexion has been associated with increased frontal plane knee motion. Volleyball players wear mid-cut shoes (MC) that have an increased collar height rising slightly superior to the talocrural joint and malleoli. The purpose of this study was to determine the effect of MC and limb dominance on knee landing mechanics. It was hypothesized that participants would land with greater initial contact (IC) and peak frontal joint plane angles and moments and smaller IC and peak sagittal plane joint angles and moments at the knee in MC …

Comparative Analysis Of Rhizosphere And Endosphere Microbiome Of Different Blueberry Species (Vaccinium Sp.), Niladri Bhowmik

Master's Theses

Blueberries are an important agricultural commodity in all over the United States. Due to its health benefits, there is a huge demand globally, thus expanding the industry. Breeding programs are essential to maintain such industries. Challenges that play a role in contemporary breeding programs are various biotic and abiotic stress factors. Studies have shown that microorganisms are recruited by plants to alleviate them during stressful conditions. Though blueberries have been cultivated for about 100 years, how the microbiome has been affected due to this is poorly understood. We hypothesized that interspecific crosses and artificial selection have significantly changed the microbiome …

The Effect Of Cannabinoids And Terpenes On The Activation Of Hmc3 Microglial Cells, Mohamed Marzouk

Honors Theses

Life expectancies of people living with HIV have significantly lengthened due to the availability of antiretroviral therapies. Despite their ability to increase survival, these treatments do not “cure” HIV, nor do the stop the onset of neurological symptoms associated with infection, termed neuroHIV. NeuroHIV describes a myriad of neurological impairments including mood disorders (depression and anxiety), cognitive impairment, neuropathic pain, and motor disinhibition that reduce quality of life for people living with HIV. Mechanistically, the neurological impairments may involve actions of neurotoxic proteins directly produced by the virus. One of these proteins that has been well-characterized is the HIV trans …

The Opioid Epidemic: How Genetics Play A Role In Addiction And Treatment, Kirsten Houston

Honors College Theses

The opioid epidemic is an issue within the pharmaceutical industry in the United States of America due to prescription and non-prescription substances being made available to the population. Opioids include chemical substances that affect the body and brain through opioid receptors, including the mu, kappa, and delta receptors. These substances are derived and synthesized from the poppy plant. Multiple causes have been linked to opioid abuse disorder, including but not limited to employment, income, housing, nutrition, mental health disorders, and genetics. By gathering information from previous literature, genetics may be the main cause of narcotic analgesic tolerance and abuse. Specific …

Cenabis Bene: A Culinary Odyssey Through Apicius, Kathryn Atkinson

Honors Scholar Theses

Apicius is the sole surviving cookbook from classical antiquity; as such it is invaluable for what it tells us about ancient feasting customs. Yet the gluttony typically associated with classical antiquity has no place in Apicius beyond the art that is inherently associated with food; we are not so much given a seat at the cena (dinner) as we are led into the kitchen, handed an apron, and instructed to cook. This critical analysis explores each recipe not only on the surface—i.e., examining the ingredients and recreating selected recipes—but also on a deeper level, lifting food above its concrete reality …

Long-Term Conservation And Conventional Tillage Systems Impact Physical And Biochemical Soil Health Indicators In A Corn–Soybean Rotation, Anuoluwa O. Sangotayo, Jemila Chellappa, Udayakumar Sekaran, Sangeeta Bansal, Padma Angmo, Paul J. Jasa, Sandeep Kumar, Javed Iqbal

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management practices tend to influence soil structure stabilization, mediating many physical, chemical, and biological processes in soils. Therefore, understanding the long-term effects of management practices on various soil health indicators is crucial to develop sustainable agricultural practices. This study aimed to assess the long-term conventional and conservation tillage effects on soil physical (aggregates) and biochemical (soil organic carbon [SOC], enzymes, and microbial biomass) parameters under a range of tillage practices in a corn–soybean rotation in Nebraska. The experiment was conducted at two locations as follows: (1) Concord site (36 years) with the three treatments: no-till (NT), disk, and moldboard …

Locomotion And Life History In A Leaping Primate: Mechanics And Energetics Of Movement Throughout The Propithecus Lifespan, Nicholas Heslep

Masters Theses, 2020-current

Arboreal primates are typically altricial, exhibit long juvenile periods, and use dynamic locomotor behaviors that can be challenging and risky. Sifaka (Propithecus verreauxi) have particularly slow life histories for their size, with long juvenile periods, protracted reproductive careers, and long life spans. Slow somatic growth poses potential mechanical challenges for juvenile sifaka who use thigh-powered vertical clinging and leaping to follow group members during travel. I examined mechanical and energetic costs of movement in developing sifaka. I instrumented 8 wild sifaka (3 yearlings, 3 subadults, 2 adults) in 4 social groups with inertial sensors measuring tri-axial acceleration for …

The Response Of Microcystis And The Microbiome To Exogenous Hydrogen Peroxide, Bryan A. Puma

Masters Theses, 2020-current

Microcystis spp. produce prolific annual blooms in freshwater systems worldwide. The success of these blooms depends heavily on the Microcystis spp. overcoming environmental factors such as oxidative stress caused by reactive oxygen species (ROS) like hydrogen peroxide. Most Microcystis genomes do not contain many genes for responding to oxidative stress, including those that encode the enzyme catalase. Other cyanobacteria such as Prochlorococcus that also lack hydrogen peroxide degrading enzymes have been shown to benefit from partnerships with heterotrophic bacteria. Microcystis spp. may also receive similar benefits from heterotrophic bacteria in the phycosphere. To test this hypothesis, we examined the …

Characterizing The Effects Of Light On The Early Onset Photoreceptor Function Loss In Mucolipidosis Type Iv, Rebecca Cistulli

Masters Theses, 2020-current

Retinal degenerative diseases (RDD’s) are a diverse group of retinal disorders that cause visual impairment. While RDD prevalence is high, little is known about the molecular mechanisms underlying the pathogenesis within some of these disorders. Here we are trying to elucidate the molecular mechanisms that drive early onset photoreceptor function loss in the RDD, Mucolipidosis type IV (MLIV). MLIV is a lysosomal storage disorder that results from loss of function mutations in the MCOLN1 gene and leads to a disruption of autophagy. The MCOLN1 gene encodes a lysosomal cation channel called Trpml1. Based on previous data from our lab, we …

All The Rage: Assessing The Age/Rage Signaling Pathway’S Effects On Healthspan And The Physiological Processes Of Aging, Brandon Ashmore

Honors Theses

Advanced glycation end products (AGEs) are protein, lipid, or nucleotide molecules that have been combined with sugars through nonenzymatic, irreversible glycation and oxidation reactions. Their accumulation in the body has been associated with the natural aging process and a wide range of pathologies, including chronic inflammation, sustained oxidative stress, diabetes, neurodegenerative diseases, atherosclerosis, and cancer. Their interaction with the receptor for advanced glycation end products (RAGE) has been linked to several proinflammatory signaling pathways associated with neurotoxicity and vascular lesions. While some research has been done on the possible health benefits of RAGE inhibition to extend lifespan, our study hopes …

Utility Of Including A Verification Stage When Vo2max Testing In Normobaric Hypoxia, Brittany Roenker

Masters Theses, 2020-current

Purpose: The objective of this study was to determine the utility of including a verification stage when assessing maximum oxygen consumption (VO_2max) in normobaric hypoxia (i.e., simulated high altitude), compared to sea level. A secondary aim was to assess the efficacy of primary and secondary criteria (VO₂ plateau, RER, maximum heart rate) traditionally used to confirm the attainment of VO_2max during the graded exercise test (GXT), in both normoxia and hypoxia. Methods: Twenty male (n=15) and female (n=5) subjects completed two separate cycling VO_2max trials, each consisting of a traditional GXT and a verification stage, …

Impact Of Creatine Supplementation On Repeated Sprint Performance In Normobaric Hypoxia, Anthony Russomano

Masters Theses, 2020-current

Purpose: The aim of this study was to determine the effect of creatine supplementation (CrS) on repeated sprint performance in both normoxia and normobaric hypoxia (simulated altitude ~3,000 m). Methods: Nineteen recreationally trained cyclists were randomly assigned to one of two groups; one received six days of either CrS (n = 12; 0.3 g/kg of body mass of creatine monohydrate) and the other received six days of placebo (PLA; n = 7; 0.3 g/kg of maltodextrin). All subjects completed separate trials in normoxia (inspired O₂ = 20.93%) and hypoxia (O₂ = 15%) before and after the supplementation …

Effects Of Beetroot Juice Supplementation On Cycling Performance In Normoxic And Hypoxic Conditions, Averi Firari

Masters Theses, 2020-current

Purpose: The purpose of this study was to examine the effects of dietary nitrate supplementation on physiological responses and cycling performance in recreationally trained (RT; VO_2max = 44 ± 7 ml/kg/min), and highly trained (HT; VO_2max = 66 ± 5 ml/kg/min) cyclists in both normoxic (NO; 20.9% FiO2) and hypoxic (HYP; 15.2% FiO2) conditions. Methods: 13 cyclists completed 4 exercise trials over the course of 4 weeks. For 3 days prior to each trial, subjects consumed 12.8 mmol of supplemental nitrates [from 140mL/d of concentrated beetroot juice (BRJ)] or placebo (PLA; 140mL/d de-nitrated beetroot juice). Subjects completed trials …

Understanding Context Dependent Responses To Climate Change In Arizona Tiger Salamanders (Ambystoma Mavortium Nebulosum), Kentrell Richardson

Masters Theses, 2020-current

Future emissions scenarios project climate change to increase average global temperatures by at least two ℃ in the next 50 years resulting in changes in local climate and causing increased variability within microclimates. Ectotherms are especially sensitive to climate change due to their dependence on environmental temperatures to regulate physiological functions. Changes in temperature are likely to impact thermally cued processes within amphibians and result in changes in variable magnitudes and directions within local populations.

Salamanders were placed in cups and partially submerged in a water bath and heated at a rate of ~0.27℃/ minute. Once salamanders were unable to …

Effects Of Litter Biomass And Soil Stoichiometry On Leaf Litter Amphibian And Reptile Density, Biomass, And Community Structure In Tropical Wet Forests, Alondra Medina Charriez

Masters Theses, 2020-current

Understanding the mechanisms behind patterns of diversity and abundance is a major goal of ecology. Research on nutrient stoichiometry has revolutionized the way ecologists understand the patchy distribution of mega-diverse invertebrate taxa that live at the soil surface and leaf litter in tropical wet forests. In this study, I studied the importance of soil nutrient concentrations and stoichiometry, habitat structure, and invertebrate biomass for patterns of amphibian and reptile density, biomass and community structure in two lowland wet tropical forests. I used data from study sites in Los Amigos Biological Station in Peru and two sampling occasions at La Selva …

Energy Homeostasis In An Extreme Vertebrate: Relationships Between Life-History Status And The Molecular Stress Response In Red-Sided Garter Snakes, Rysa Thomas

Masters Theses, 2020-current

Vertebrates experience diverse and unique life-history events, many of which are annual and energetically taxing. Energy is a limited resource and thus its careful budgeting is critical for successful transitions between life-history states and across the lifetime of a species. Glucocorticoids (GCs) regulate vertebrate energetics via partitioning of energy use and storage in metabolic tissues (liver, fat, muscle) and exert their effects through activation of two main receptor types, the glucocorticoid receptor (GR), responsible for mobilization of energy from storage tissues, and the mineralocorticoid receptor (MR), responsible for ion balance and osmotic homeostasis. Species adapted to extreme environments carefully balance …

Understanding The Regulatory Context And Mechanism Of Hlh-25 Mediated Transcriptional Repression, Dagmawi Mamo

Masters Theses, 2020-current

The HES family of transcription factors are primarily repressors of transcription that play critical roles in mammalian embryogenesis by regulating cell differentiation and proliferation. Proper functioning of HES proteins is crucial in humans, as mutations or misexpression of HES1 is associated with lung, pancreas, colon, and other cancers. HES1 may mediate short-range or long-range repression through DNA-binding and or protein-protein interactions with other factors. However, prior genetic studies have not fully elucidated how the context-specific binding of HES1, or its C. elegans ortholog HLH-25, promotes the repression of transcription. Characterization of the cis-regulatory context and mechanism of HLH-25 mediated repression …