Life Sciences Commons^™

Utilizing Nebraska Case Farms To Analyze Farm-Level Income And Policy Changes, Tatum R. Brunkow, Bradley D. Lubben, Glennis Mcmclure

Cornhusker Economics

Agricultural producers, professionals, and policymakers often look to long-run projections for the agricultural industry as they make business and policy decisions. They can look to three different baseline projections that are produced by the United States Department of Agriculture, the Food & Agricultural Policy Research Institute (FAPRI), and the Congressional Budget Office (CBO). These baselines provide a 10-year outlook for the agricultural industry from prices and inventories for crops and livestock to international markets and income and expenditures. While this information provides insight into what direction agriculture may move, it can be hard to see the impact at the state …

Employing A Transitivity Violation Detection Algorithm To Assess Best–Worst Scaling Designs, Courtney Bir, Nicole Olynk Widmar, Natalya Slipchenko, Addison Polcyn, Christopher A. Wolf

Department of Agricultural Economics Faculty Publications

When choosing a partial factorial design for best–worst scaling (BWS) or other discrete choice experiment, researchers are faced with design size choices. This work investigates differences between two case 1 (object) BWS choice experiment designs that varied in choice set size and number of questions. Using a random-parameter logit model, preference shares were determined and statistically compared between models. The number of transitivity violations occurring between the experimental designs was analyzed employing a newly developed directed graph algorithm. The relative importance consumers placed on dairy milk attributes differed between the designs studied. The design presenting fewer attributes per choice set …

Unraveling The Neural Basis Of Emotions: Advancing Understanding With Ecologically Valid Paradigms And High-Resolution Intracranial Eeg, Tiankang Xie

Dartmouth College Ph.D Dissertations

Background

Emotion arises from integrating information about the external world with memories of past experiences, current homeostatic states, and future goals. They play a vital role in regulating our thoughts, feelings and behaviors, significantly impacting our mental health. Thus, it is important to understand the neurobiological mechanisms that give rise to emotions. While there has been considerable work investigating the neural basis of emotions, progress has been hampered by several methodological limitations. For example, prior work has relied on relatively simple and isolated stimuli, which often fail to effectively capture the dynamic and multifaceted nature of emotional experiences in real-life …

Arthropod Diversity In Phytotelmata Of Calathea Capitata (Zingiberales; Marantaceae) Host Plants From Peru, Divya Dendi, Timo Förster, Caroline S. Chaboo

Department of Entomology: Faculty Publications

Cryptic habitats are often overlooked in biodiversity surveys. Phytotelmata, or plant pools, are one type of cryptic habitat that supports diverse fauna in a miniature ecosystem. This study surveys the arthropod community of two types of phytotelmata, bracts and leaf rolls, on a single species, Calathea capitata (Ruiz and Pav.) Lindl. (Zingiberales: Marantaceae), from one Amazon site in Peru. Specimens were collected from eight bracts and eight leaf rolls. A total of 55 arthropods (36 adults, 19 juveniles) were found in both phytotelmata types. In the bract samples were found: spiders (Araneae: Corinnidae), beetles (Coleoptera: Carabidae, Erotylidae, Staphylindae), flies (Diptera: …

P3 And Nia-Pro Of Turnip Mosaic Virus Are Independent Elicitors Of Superinfection Exclusion, Haritha Nunna, Feng Qu, Satyanarayana Tatineni

Department of Plant Pathology: Faculty Publications

Superinfection exclusion (SIE) is an antagonistic interaction between identical or closely related viruses in host cells. Previous studies by us and others led to the hypothesis that SIE was elicited by one or more proteins encoded in the genomes of primary viruses. Here, we tested this hypothesis using Turnip mosaic virus (TuMV), a member of the genus Potyvirus of the family Potyviridae, with significant economic consequences. To this end, individual TuMV-encoded proteins were transiently expressed in the cells of Nicotiana benthamiana leaves, followed by challenging them with a modified TuMV expressing the green fluorescent protein (TuMV-GFP). Three days after …

An Analysis Of Lichen Presence On Quercus And Non-Quercus In Chicagoland Area, Shelby Johnson

DePaul Discoveries

Both anthropogenic change and the spread of invasive species have led to changes in urban and forest tree diversity. Oak rust, acute oak decline, and emerald ash borer have all had a detrimental effect on tree species in the Chicagoland area. Quercus species are well known habitats for lichen species including Physcia millegrana, Physcia stellaris, Punctelia rudecta, Flavoparmelia caperata, Xanthomendosa, and Candeleria concolor. Due to the decrease in the traditional Quercus habitats for lichen and the increase in nonnative and nontraditional tree species being introduced, particularly in cities, this study aimed to compare the number and diversity of …

Comparisons Of Above- And Below-Ground Carbon Storage In A Northeastern Illinois Urban Forest Following Rhamnus Cathartica And Fraxinus Spp. Removal, River Sanchez-Dudik, Elene Drosos

DePaul Discoveries

This study focused on quantifying potential differences in ecosystem services (carbon storage, soil organic matter, macroarthropod density) in a small, partially restored urban forest in order to determine if common buckthorn and standing dead ash removal effects can be detected while restoration is on-going. We calculated aboveground carbon storage (tons/total area) using whole tree biomass equations and compared this to i-Tree Canopy estimations. We collected SOM through loss-on-ignition and collected macroinvertebrates by pitfall trapping to determine differences along transects. Aboveground carbon storage, soil organic matter, and macroinvertebrate total results for this study were found to be statistically not significant, indicating …

The Influence Of Vehicular Traffic And Land Use Typology On The Spatial Patterns And Concentrations Of Soil Lead (Pb) In The Uptown Community Area Of Chicago, Andreas 'Dre' Harris

DePaul Discoveries

Lead (Pb) is a harmful element whose presence threatens the well-being of living organisms and their environments. There are higher concentrations and an increased risk of Pb exposure in areas that provide fewer natural pathways for Pb to accumulate into. In urban areas, the soil is one of the most common and available environmental sinks for Pb accumulation. This study examines the total soil Pb concentrations in relation to land-use types and average daily traffic volumes (cars/day) in each census tract in the Uptown Community Area of Chicago. This study provides insight into how land use and traffic volume may …

Understanding The Effect Of Ranching On Quercus Brandegeei Recruitment In The Sierra La Laguna Biosphere Reserve, Xavier O. Espinoza

DePaul Discoveries

In this study, we attempt to deepen our understanding of the mechanisms responsible for Quercus brandegeei’s observed lack of regeneration by identifying which animal species (wild and domesticated) most frequently were observed eating, passing by, or searching for seeds and seedlings. We established 10 paired plots (10 enclosed and 10 immediately outside enclosures) and positioned one motion-activated camera in each plot to observe animal visitations to Quercus brandegeei individuals over the course of several months (October 2019 – March 2020). No seeds and seedlings survived outside of enclosed areas at the end of the study based on their absence. Very …

P3 And Nia-Pro Of Turnip Mosaic Virus Are Independent Elicitors Of Superinfection Exclusion, Haritha Nunna, Feng Qu, Satyanarayana Tatineni

Department of Plant Pathology: Faculty Publications

Superinfection exclusion (SIE) is an antagonistic interaction between identical or closely related viruses in host cells. Previous studies by us and others led to the hypothesis that SIE was elicited by one or more proteins encoded in the genomes of primary viruses. Here, we tested this hypothesis using Turnip mosaic virus (TuMV), a member of the genus Potyvirus of the family Potyviridae, with significant economic consequences. To this end, individual TuMV-encoded proteins were transiently expressed in the cells of Nicotiana benthamiana leaves, followed by challenging them with a modified TuMV expressing the green fluorescent protein (TuMV-GFP). Three days after …

First Things First: Widespread Nutrient Deficiencies Limit Yields In Smallholder Oil Palm Fields, Hendra Sugianto, Juan Pablo Monzon, Iput Pradiko, Fatima A. Tenorio, Ya Li Lim, Christopher R. Donough, Sunawan, Suroso Rahutomo, Fahmuddin Agus, James Cock, Joni Amsar, Rana Farrasati, Ridho Iskandar, Juan I. Rattalino Edreira, Shofia Saleh, Heri Santoso, Antonius P. Tito, Nadib Ulfaria, Maja A. Slingerland, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

CONTEXT: Indonesia is the most important oil palm producing country. Nearly 40% of planted area is managed by smallholders, with yields well below the potential. Efforts to increase productivity have focused on the source of planting material, with little attention paid to plant nutrition.

OBJECTIVE: To assess the degree to which current productivity in smallholder oil palm fields is limited by nutrients in scenarios with distinct sources of planting material.

METHODS: We collected detailed data on leaf nutrient concentration from 30 fields to derive minimum sampling size needed to diagnose nutrient status. Subsequently, we collected data on …

Tracing Energy Pathways Through Coastal Wetland Food Webs, Katherine Loesser

LSU Master's Theses

Southeastern Louisiana’s coastal wetlands are important habitat for aquatic species, yet the spatial heterogeneity in habitat types and abundance of many basal energy sources makes it challenging to elucidate patterns of energy flow across the landscape mosaic. This ecosystem is experiencing substantial changes, both through anthropogenically-accelerated climate change and anthropogenic landscape modifications. Therefore, the overall goal of this thesis was to trace patterns of energy flow across coastal wetland landscapes to determine which basal energy pathways support aquatic food webs and if patterns of energy pathway dependence are altered by changes to the landscape. In the first part of this …

Role Of Glucose Metabolic Reprogramming In Breast Cancer Progression And Drug Resistance, Pan Lei, Wenzhou Wang, Marisela Sheldon, Yutong Sun, Fan Yao

Faculty, Staff and Student Publications

The involvement of glucose metabolic reprogramming in breast cancer progression, metastasis, and therapy resistance has been increasingly appreciated. Studies in recent years have revealed molecular mechanisms by which glucose metabolic reprogramming regulates breast cancer. To date, despite a few metabolism-based drugs being tested in or en route to clinical trials, no drugs targeting glucose metabolism pathways have yet been approved to treat breast cancer. Here, we review the roles and mechanisms of action of glucose metabolic reprogramming in breast cancer progression and drug resistance. In addition, we summarize the currently available metabolic inhibitors targeting glucose metabolism and discuss the challenges …

G Protein-Coupled Receptor-Targeting Antibody-Drug Conjugates: Current Status And Future Directions, Peyton High, Kendra S Carmon

Faculty, Staff and Student Publications

In recent years, antibody-drug conjugates (ADCs) have emerged as promising anti-cancer therapeutic agents with several having already received market approval for the treatment of solid tumor and hematological malignancies. As ADC technology continues to improve and the range of indications treatable by ADCs increases, the repertoire of target antigens has expanded and will undoubtedly continue to grow. G protein-coupled receptors (GPCRs) are well-characterized therapeutic targets implicated in many human pathologies, including cancer, and represent a promising emerging target of ADCs. In this review, we will discuss the past and present therapeutic targeting of GPCRs and describe ADCs as therapeutic modalities. …

In Vitro Antifungal Potential Of Vanillic Acid Against Sclerotium Rolfsii, Muhammad Yousaf, Amna Shoaib, Qudsia Fatima, Shanila Bukhari, Numan Ali, Uswa Fatima

Journal of Bioresource Management

The worldwide demand for making agriculture greener, safer, and more efficient can be met aptly by the application of biopesticides. Vanillic acid is a naturally occurring versatile phenolic molecule with promising antifungal activity, however, there have been no studies of the possible use of vanillic acid for its antifungal activity against a serious soil-borne fungal plant pathogen namely Sclerotium rolfsii. This study was performed to assess the antifungal potential of vanillic acid by analyzing growth, morphological, and biochemical changes in S. rolfsii under laboratory conditions. The results revealed that vanillic acid (0.003-0.10 %) significantly reduced fungal growth, distorted fungal …

Biochemical Markers Of Liver Toxicity Among Coal Mine Workers Of Punjab, Pakistan Suffering From Hcv, Aima Iram Batool, Asma Noreen, Naima Huma Naveed, Iram Inayat, Muhammad Fayyaz Ur Rehman, Fariha Idrees, Muhammad Ali Kanwal, Syeda Humaira Jabeen, Hakim Bibi

Journal of Bioresource Management

Hepatitis C is among the leading hepatic disorders in current period through which about 3 % world population has been anguish among them 170 million were diagnosed as persistent carriers. A great range of alteration in liver biochemical parameters were found to be allied with HCV infestation. Current study was designed to evaluate the extent of HCV mediated abnormalities in liver biochemical markers which includes ALT (alanine aminotransferase), AST (Aspartate transaminase), ALP (Alkaline Phosphatase) and serum bilirubin. The study was conducted on coal miners of Punjab province, Pakistan. HCV was primarily diagnosed through one step rapid test device after which …

Environmental Monitoring Of Heavy Metals Status In Semiarid Lands Of Northeastern Algeria, Rania Gacem, Hana Souahi, Chemseddine Fehdi, Abderrezzeq Chebout

Journal of Bioresource Management

With the rapid development of industry, heavy metal contamination is becoming among the most important environmental problems causing worldwide concern. The purpose of this study was to evaluate the level of soil heavy metal pollution in the semi-arid areas of Northeast Algeria. To evaluate the ecological state of soils, we investigated fifteen sites. The level of heavy metals (HMs) toxicity and soil characteristics likr pH, electrical conductivity, organic matter, calcium carbonate, calcium, sodium, magnesium, phosphorus, nitrogen, and potassium were assessed during this study. The results showed that the mean values of heavy metals were as follows in ppm: Zn (41.197 …

Energy Costs Of Chair Sitting And Standing Video Exercises In Chinese Older Adults, Ages 60 To 89 Years, Zhenghua Cai, Minghui Quan, Muyang Huan, Guangli Sun, Stephen D. Herrmann, Barbara E. Ainsworth, Peijie Chen

International Journal of Exercise Science

International Journal of Exercise Science 16(7): 814-827, 2023. Home-based video exercise interventions improve older adults’ physiological performance and functional capacity. Little is known about the energy costs of video exercises in older adults. The Compendium of Physical Activities (PAs) has few items with PA metabolic equivalents (METs) in older adults. This study measured the energy costs of four chair and two standing exercises (sitting Tai Chi, Yoga, mobility ball, aerobics: standing, slow aerobics, and fast aerobics). Fifteen females and 14 males, 62-87 years (M ± SD, 73 ± 7.7 years), were categorized into three age groups (60-69, 70-79, 80-89). Oxygen …

Two Different Approaches To Dry-Land Training Do Not Improve The Water Performance Of Swimmers, Matheus Silva Norberto, Carlos Augusto Kalva-Filho, Guilherme Navarro Schneider, Eduardo Zapaterra Campos, Marcelo Papoti

International Journal of Exercise Science

International Journal of Exercise Science 16(6): 770-790, 2023. Literature diverges about the performance improvement after dry-land training. Thus, the objective of the present study was to compare the effect of two models of dry-land training. Twenty-nine swimmers were divided into three groups, combined strength and power training (PTG), only strength training (STG), and a control group (CG). Measurements were taken for six weeks, before dry-land exposure (M1), after four weeks of specific training with exposure to dry-land training by two groups (M2), and after two weeks of taper without exposure to dry-land training (M3). Strength in specific exercises, jumping tests, …

Influence Of Systematic Training On Morpho-Physiological And Motor Ability Profiles Of Indian Young Female Rowers, Kayakers And Canoers, Tamoghni Manna, Snehunsu Adhikari, Alak Kumar Syamal

International Journal of Exercise Science

International Journal of Exercise Science 16(6): 744-755, 2023. Our study was carried on junior female athletes (22 rowers, 11 kayakers and 7 canoers) adopting systemic training to explore the possible training manipulation that can be implicated in these three kinds of water sports, might be in a different way. Several morpho-physiological parameters and motor ability profiles were measured by standard methods. Accordingly, body weight (kg), performing time of 2.4 km run (sec), 6×10 meters shuttle run/agility (sec) of female rowers were reduced progressively and significantly from Preparatory Period (PP1) to General Practice Period (GPP) i.e., from (59.41±4.84) to (52.23±5.34), (773.04±92.64) …

Psychological And Physiological Responses Across Six Weeks Of Hiit And Mict In Previously Inactive Young Adults, Emily R. Dunston, Katrina Taylor

International Journal of Exercise Science

International Journal of Exercise Science 16(5): 756-769, 2023. High-intensity interval training (HIIT) is suggested as a public health strategy to increase engagement in, and adherence to, physical activity. However, debate exists regarding the efficacy in inactive individuals. PURPOSE: To determine the physiological and psychological responses to three weeks of supervised and three weeks of unsupervised HIIT or moderate-intensity continuous training (MICT) in previously inactive adults. METHODS: Young adults (n = 20; 21.4 ± 2.2 years; 13 females) were randomized to six weeks of HIIT or MICT. Pre- and post-testing included anthropometric measures, an incremental exercise test, and body composition. …

The Effects Of Hiit Versus Mict And Sedentary Controls On Blood Lipid Concentrations In Nondiabetic Overweight And Obese Young Adults: A Meta-Analysis., Christian P. Mccormick, Garrett Mamikunian, David B. Thorp

International Journal of Exercise Science

International Journal of Exercise Science 16(3): 791-813, 2023. With rates of obesity and dyslipidemia rising among young adults, this meta-analysis aimed to compare the effects of high-intensity interval training (HIIT) versus moderate-intensity continuous training (MICT) and sedentary controls (CON) on low-density lipoprotein (LDL), high-density lipoprotein (HDL), triglyceride (TG), and total cholesterol (TC) in nondiabetic overweight and obese young adults to determine if HIIT or MICT is more efficacious in improving dyslipidemia. Studies included in the analysis had to be randomized controlled trials or quasi-experimental studies, comparing the effects of HIIT versus MICT or CON on at least three variables of …

Putrescine Detected In Strains Of Staphylococcus Aureus, Javier Seravalli, Frank Portugal

Department of Biochemistry: Faculty Publications

Most forms of life, including the archaea, bacteria, and eukaryotes synthesize the polyamine putrescine. Although putrescine is widely distributed, several Gram-positive bacteria, including Staphylococcus aureus (S. aureus), appear to be the exceptions. We report here that strains of S. aureus can produce the polyamine putrescine, as well as the derivative N-acetyl-putrescine. Three strains of S. aureus from the American Type Culture Collection (ATCC), one strain listed in the National Center for Biotechnology Information (NCBI) database, whose genomic sequence is well defined, and well as eight strains from S. aureus-induced brain abscesses of individual patients from multiple …

Regulation Of The Wnt/Wingless Receptor Lrp6/Arrow By The Deubiquitylating Complex Usp46, Zachary T. Spencer

Dartmouth College Ph.D Dissertations

The evolutionarily conserved Wnt/Wingless signal transduction pathway is critical for the proper development of all animals and implicated in numerous diseases in adulthood. Upon binding of the Wnt/Wingless ligand, a cascade of events culminates in inactivation of the destruction complex, a negative regulator of the pathway, and the subsequent formation of singalosomes which mediate pathway activation. A critical component of signalosome formation is the Wnt/Wingless receptor LRP6/Arrow. Upon canonical pathway activation, LRP6/Arrow undergoes activation via phosphorylation by several kinases and complexes with another Wnt/Wingless receptor Frizzled, along with several cytoplasmic components. While many studies have investigated the regulatory mechanisms of …

An Assessment Of The Impact Of Raman Based Glucose Feedback Control On Cho Cell Bioreactor Process Development, Luke Gibbons, Francis Maslanka, Nikky Le, Al Magill, Pankaj Singh, Joseph Mclaughlin, Fiona Madden, Ronan Hayes, Barry Mccarthy, Christopher Rode, Jim O'Mahony, Rosemary Rea, Caitlin O'Mahony-Hartnett

Department of Biological Sciences Publications

Process analytical technology (PAT) tools such as Raman Spectroscopy have become established tools for real time measurement of CHO cell bioreactor process variables and are aligned with the QbD approach to manufacturing. These tools can have a significant impact on process development if adopted early, creating an end-to-end PAT/QbD focused process. This study assessed the impact of Raman based feedback control on early and late phase development bioreactors by using a Raman based PLS model and PAT management system to control glucose in two CHO cell line bioreactor processes. The impact was then compared to bioreactor processes which used manual …

We Need Faithful Farmers, Dale E. Vos

Faculty Work Comprehensive List

"A faithful farmer who cares is performing worshipful work."

Posting about the calling of agriculture from In All Things - an online journal for critical reflection on faith, culture, art, and every ordinary-yet-graced square inch of God’s creation.

https://inallthings.org/we-need-faithful-farmers/

Acquisition Of A Lexicon For Family History Information: Bidirectional Encoder Representations From Transformers-Assisted Sublanguage Analysis, Sunyang Fu, Kevin J Peterson, Xuguang Ai, Sijia Liu, Ramakanth Kavuluru, Hongfang Liu

Faculty, Staff and Student Publications

BACKGROUND: A patient's family history (FH) information significantly influences downstream clinical care. Despite this importance, there is no standardized method to capture FH information in electronic health records and a substantial portion of FH information is frequently embedded in clinical notes. This renders FH information difficult to use in downstream data analytics or clinical decision support applications. To address this issue, a natural language processing system capable of extracting and normalizing FH information can be used.

OBJECTIVE: In this study, we aimed to construct an FH lexical resource for information extraction and normalization.

METHODS: We exploited a transformer-based method to …

First Documentation Of Ergasilus Centrarchidarum On Smallmouth Bass In Idaho, Danielle Perkins, John W. Heckel Iv, Brett High, Eric J. Billman

Western North American Naturalist

Ergasilus centrarchidarum is a parasitic copepod that infects the gills of fishes in the family Centrarchi­dae. This parasite has been introduced in many regions of North America through introduction of infected Smallmouth Bass (Micropterus dolomieu); however, effects of E. centrarchidarum on its hosts have been poorly studied. Ergasilus centrarchidarum was first discovered infecting Smallmouth Bass in Ririe Reservoir in 2020, although timing of introduction remains uncertain. Our objective was to determine prevalence and intensity of infection of E. centrarchidarum on Smallmouth Bass in Ririe Reservoir. We used angling to collect Smallmouth Bass in the upstream portion of Ririe …

Smokejumper Obituary: Webster, Robert Lyle "Bob" (Missoula 1955), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Hdac1 Regulates The Chromatin Landscape To Control Transcriptional Dependencies In Chronic Lymphocytic Leukemia, Tzung-Huei Lai, Hatice Gulcin Ozer, Pierluigi Gasparini, Giovanni Nigita, Rosario Distefano, Janani Ravikrishnan, Juan Gallegos, Sachet Shukla, Vinay Puduvalli, Jennifer Woyach, Rosa Lapalombella, James Blachly, John C Byrd, Deepa Sampath

Faculty, Staff and Student Publications

Chronic lymphocytic leukemia (CLL) is a quiescent B-cell malignancy that depends on transcriptional dysregulation for survival. The histone deacetylases are transcriptional regulators whose role within the regulatory chromatin and consequence on the CLL transcriptome is poorly characterized. Here, we profiled and integrated the genome-wide occupancy of HDAC1, BRD4, H3K27Ac, and H3K9Ac signals with chromatin accessibility, Pol2 occupancy, and target expression signatures in CLL cells. We identified that when HDAC1 was recruited within super-enhancers (SEs) marked by acetylated H3K27 and BRD4, it functioned as a transcriptional activator that drove the de novo expression of select genes to facilitate survival and progression …