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Full-Text Articles in Life Sciences

The Flora Of Meadowlark Prairie, Northeastern Seward County, Nebraska, Steven B. Rolfsmeier Aug 2023

The Flora Of Meadowlark Prairie, Northeastern Seward County, Nebraska, Steven B. Rolfsmeier

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

This report is on the flora of the Meadowlark Prairie. The prairie is an approximately 7 acre remnant of virgin tall-grass prairie in extreme northeastern Seward County, Nebraska. The remnant is triangular in shape and lies on a gentle southeast-facing slope with a total relief of 50 ft., along the east boundary of the Meadowlark Recreation Area. The prairie is surrounded on the east side by a small brome-infested prairie remnant and cultivated field off the NRD property, and on the remaining sides by formerly cultivated fields now seeded to native warm-season grasses. Soils in the area are primarily derived …


The Flora And Plant Communities Of The Ceresco Saline Basins, Southern Saunders County, Nebraska, Steven B. Rolfsmeier Aug 2023

The Flora And Plant Communities Of The Ceresco Saline Basins, Southern Saunders County, Nebraska, Steven B. Rolfsmeier

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

This report is on the flora and plant communities of the Ceresco Saline Basins. The basins are along Rock Creek east of Ceresco and represent the northernmost representatives of the “eastern saline marsh” community in Nebraska. Eastern saline marshland is mostly restricted to the Salt Creek drainage in northern and central Lancaster County, though the Ceresco basins extend a mile or more north into Saunders County in the floodplain of Rock Creek. Some of the wetland in this area is currently under management of the Nebraska Game and Parks Commission, while some of the northernmost portions of the basins are …


Chalcochares Hirsutifemur (Banks) (Hymenoptera: Pompilidae: Pompilinae), A Probable Obligate Parasitoid Of Aptostichus Simon (Araneae: Mygalomorphae: Euctenizidae) In California, Frank E. Kurczewski, Alice J. Abela, Akira Shimizu Aug 2023

Chalcochares Hirsutifemur (Banks) (Hymenoptera: Pompilidae: Pompilinae), A Probable Obligate Parasitoid Of Aptostichus Simon (Araneae: Mygalomorphae: Euctenizidae) In California, Frank E. Kurczewski, Alice J. Abela, Akira Shimizu

Insecta Mundi

Size equivalence, seasonal synchronicity, geospatial sympatry, habitat specificity, and host-search­ing behavior implicate the spider wasp Chalcochares hirsutifemur (Banks) (Hymenoptera: Pompilidae: Pompilinae) as an obligate parasitoid on species of the wafer-lid spider genus Aptostichus Simon (Araneae: Mygalomorphae: Euctenizidae) on coastal sandy back dunes in San Luis Obispo and Santa Barbara coun­ties, CA. This is substantiated by 2010–2022 macrophotographs, videos, and field observations. Such host evidence supports recent unpublished phylogenomic studies that place Chalcochares as a sister genus of the spider wasp tribe Aporini, in which all species are known obligate parasitoids on trapdoor spiders and related Mygalomorphae. Chalcochares hirsutifemur and C. …


Crabr-Net: A Contextual Relational Attention-Based Recognition Network For Remote Sensing Scene Objective, Ningbo Guo, Mingyong Jiang, Lijing Gao, Yizhuo Tang, Jinwei Han, Xiangning Chen Aug 2023

Crabr-Net: A Contextual Relational Attention-Based Recognition Network For Remote Sensing Scene Objective, Ningbo Guo, Mingyong Jiang, Lijing Gao, Yizhuo Tang, Jinwei Han, Xiangning Chen

Faculty, Staff and Student Publications

Remote sensing scene objective recognition (RSSOR) plays a serious application value in both military and civilian fields. Convolutional neural networks (CNNs) have greatly enhanced the improvement of intelligent objective recognition technology for remote sensing scenes, but most of the methods using CNN for high-resolution RSSOR either use only the feature map of the last layer or directly fuse the feature maps from various layers in the "summation" way, which not only ignores the favorable relationship information between adjacent layers but also leads to redundancy and loss of feature map, which hinders the improvement of recognition accuracy. In this study, a …


Revisión De Las Especies Del Género Eurybia [Illiger, 1807] De Colombia Y Descripción De Nuevos Taxa (Lepidoptera: Riodinidae), Julián A. Salazar E, Luis Miguel Constantino, Gabriel Rodríguez, Efraín R. Henao Aug 2023

Revisión De Las Especies Del Género Eurybia [Illiger, 1807] De Colombia Y Descripción De Nuevos Taxa (Lepidoptera: Riodinidae), Julián A. Salazar E, Luis Miguel Constantino, Gabriel Rodríguez, Efraín R. Henao

Insecta Mundi

Se revisan las especies del género Eurybia Illiger (Lepidoptera: Riodinidae) de Colombia en base al estudio de especimenes depositados en colecciones nacionales publicas y privadas. Como resultado se analizaron 20 taxones y se describen como nuevas a: E. chocoensis nueva especie, E. dardus atlantica nueva subespecie, E. molochina violacea nueva subspecie, E. rubeolata nielseni nueva subspecie y E. rubeolata rufomarginata nueva subspecie. Eurybia dardus fassli Seitz, 1916, E. franciscana caerulescens Druce, 1904 y E. dardus mestiza Salazar, Villalobos y Vargas, 2021 son restituidos a nivel subespecífico. Se crea la nueva combinación de E. rubeolata silaceana basado …


Usa: Wolf Connection And Inclusive, Safe Spaces For All, Patrick Fuery, Kelli Fuery Aug 2023

Usa: Wolf Connection And Inclusive, Safe Spaces For All, Patrick Fuery, Kelli Fuery

CCI Books and Book Chapters

"Wolf Connection is a wolf sanctuary located on the outskirts of a rural town, Acton, California, nestled in the Angeles National Forest. The sanctuary consists of 165 acres of stunning woodland and high desert mountains, including a year-round stream. It is located within a one-hour drive from Los Angeles. Wolf Connection runs a series of programmes based around issues of mental health, addressing social and economic inequality, and providing strategies for resilience and well-being. Wolf Connection identifies the following as its core business activities: Providing Animal Rescue and Wildlife Preservation; At-Risk Youth Education and Empowerment; Community Empowerment; and Environmental Awareness …


Bison Alter The Northern Yellowstone Ecosystem By Breaking Aspen Saplings, Luke E. Painter, Robert L. Beschta, William J. Ripple Aug 2023

Bison Alter The Northern Yellowstone Ecosystem By Breaking Aspen Saplings, Luke E. Painter, Robert L. Beschta, William J. Ripple

Aspen Bibliography

The American bison (Bison bison) is a species that strongly interacts with its environment, yet the effects of this large herbivore on quaking aspen (Populus tremuloides) have received little study. We documented bison breaking the stems of aspen saplings (young aspen > 2 m tall and ≤ 5 cm in diameter at breast height) and examined the extent of this effect in northern Yellowstone National Park (YNP). Low densities of Rocky Mountain elk (Cervus canadensis) after about 2004 created conditions conducive for new aspen recruitment in YNP's northern ungulate winter range (northern range). We sampled …


A Follow-Up Survey To Assess Stakeholders’ Perspectives On Weed Management Challenges And Current Practices In Nebraska, Usa, Shawn T. Mcdonald, Debalin Sarangi, Jennifer M. Rees, Amit J. Jhala Aug 2023

A Follow-Up Survey To Assess Stakeholders’ Perspectives On Weed Management Challenges And Current Practices In Nebraska, Usa, Shawn T. Mcdonald, Debalin Sarangi, Jennifer M. Rees, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

Stakeholders across the state of Nebraska, USA, were surveyed in 2019–2020 to assess problem weeds and weed management practices in agronomic crops. A total of 420 complete responses were obtained across four Nebraska districts (Northeast, Panhandle, Southeast, and West Central). Accumulated across the state, 65.5% of farmed or scouted crop ground in Nebraska was under no-till production, with the major crops being corn and soybean representing 39.3% and 30.7% of agronomic crop production area, respectively. Palmer amaranth, horseweed, waterhemp, kochia, and giant ragweed were ranked the most problematic weeds. In a 2014–2015 survey, Palmer amaranth was the sixth most problematic …


Saturating Growth Rate Against Phosphorus Concentration Explained By Macromolecular Allocation, Gabrielle Armin, Jongsun Kim, Keisuke Inomura Aug 2023

Saturating Growth Rate Against Phosphorus Concentration Explained By Macromolecular Allocation, Gabrielle Armin, Jongsun Kim, Keisuke Inomura

School of Earth, Environmental, & Marine Sciences Faculty Publications

The saturating relationship between phytoplankton growth rate and environmental nutrient concentration has been widely observed, yet the mechanisms behind the relationship remain elusive. Here, we use a mechanistic model of phytoplankton and show that the saturating relationship between growth rate and phosphorous concentration can be interpreted by intracellular macromolecular allocation. At low nutrient levels, the diffusive nutrient transport linearly increases with the phosphorous concentration, while the internal phosphorous requirement increases with the growth rate, leading to a non-linear increase in the growth rate with phosphorous. This increased phosphorous requirement is due to the increased allocation to biosynthetic and photosynthetic molecules. …


Hypothyroidism Following Radiotherapy For Head And Neck Cancer: A Systematic Review Of The Literature And Opportunities To Improve The Therapeutic Ratio, Michael K Rooney, Lauren M Andring, Kelsey L Corrigan, Vincent Bernard, Tyler D Williamson, Clifton D Fuller, Adam S Garden, Brandon Gunn, Anna Lee, Amy C Moreno, William H Morrison, Jack Phan, David I Rosenthal, Michael Spiotto, Steven J Frank Aug 2023

Hypothyroidism Following Radiotherapy For Head And Neck Cancer: A Systematic Review Of The Literature And Opportunities To Improve The Therapeutic Ratio, Michael K Rooney, Lauren M Andring, Kelsey L Corrigan, Vincent Bernard, Tyler D Williamson, Clifton D Fuller, Adam S Garden, Brandon Gunn, Anna Lee, Amy C Moreno, William H Morrison, Jack Phan, David I Rosenthal, Michael Spiotto, Steven J Frank

Faculty, Staff and Student Publications

(1) Background: Radiotherapy (RT) is a central component for the treatment of many head and neck cancers. In this systematic review of the literature, we aimed to characterize and quantify the published evidence on RT-related hypothyroidism, including estimated incidence, clinical risk factors, and dosimetric parameters that may be used to guide clinical decision making. Furthermore, we aimed to identify potential areas of improvement in the prevention and clinical management of RT-induced hypothyroidism, including the role of modern advanced therapeutic techniques. (2) Methods: We conducted a systemic review of the literature in accordance with Preferred Reporting Items for Systematic Reviews and …


Hypothyroidism Following Radiotherapy For Head And Neck Cancer: A Systematic Review Of The Literature And Opportunities To Improve The Therapeutic Ratio, Michael K Rooney, Lauren M Andring, Kelsey L Corrigan, Vincent Bernard, Tyler D Williamson, Clifton D Fuller, Adam S Garden, Brandon Gunn, Anna Lee, Amy C Moreno, William H Morrison, Jack Phan, David I Rosenthal, Michael Spiotto, Steven J Frank Aug 2023

Hypothyroidism Following Radiotherapy For Head And Neck Cancer: A Systematic Review Of The Literature And Opportunities To Improve The Therapeutic Ratio, Michael K Rooney, Lauren M Andring, Kelsey L Corrigan, Vincent Bernard, Tyler D Williamson, Clifton D Fuller, Adam S Garden, Brandon Gunn, Anna Lee, Amy C Moreno, William H Morrison, Jack Phan, David I Rosenthal, Michael Spiotto, Steven J Frank

Faculty, Staff and Student Publications

(1) Background: Radiotherapy (RT) is a central component for the treatment of many head and neck cancers. In this systematic review of the literature, we aimed to characterize and quantify the published evidence on RT-related hypothyroidism, including estimated incidence, clinical risk factors, and dosimetric parameters that may be used to guide clinical decision making. Furthermore, we aimed to identify potential areas of improvement in the prevention and clinical management of RT-induced hypothyroidism, including the role of modern advanced therapeutic techniques. (2) Methods: We conducted a systemic review of the literature in accordance with Preferred Reporting Items for Systematic Reviews and …


Bcl-2 Inhibition Combined With Pparα Activation Synergistically Targets Leukemic Stem Cell-Like Cells In Acute Myeloid Leukemia, Chendi Xie, Hui Zhou, Dongmei Qin, Huijian Zheng, Yuanfang Tang, Wenjuan Li, Jie Zhou, Long Liu, Xinxin Yu, Hongpeng Duan, Yong Zhou, Zhifeng Li, Zhihong Fang, Yiming Luo, Bing Z Carter, Bing Xu, Jie Zha Aug 2023

Bcl-2 Inhibition Combined With Pparα Activation Synergistically Targets Leukemic Stem Cell-Like Cells In Acute Myeloid Leukemia, Chendi Xie, Hui Zhou, Dongmei Qin, Huijian Zheng, Yuanfang Tang, Wenjuan Li, Jie Zhou, Long Liu, Xinxin Yu, Hongpeng Duan, Yong Zhou, Zhifeng Li, Zhihong Fang, Yiming Luo, Bing Z Carter, Bing Xu, Jie Zha

Faculty, Staff and Student Publications

Persistence of leukemic stem cells (LSCs) is one of the determining factors to acute myeloid leukemia (AML) treatment failure and responsible for the poor prognosis of the disease. Hence, novel therapeutic strategies that target LSCs are crucial for treatment success. We investigated if targeting Bcl-2 and peroxisome proliferator activated receptor α (PPARα), two distinct cell survival regulating mechanisms could eliminate LSCs. This study demonstrate that the Bcl-2 inhibitor venetoclax combined with the PPARα agonist chiglitazar resulted in synergistic killing of LSC-like cell lines and CD34+ primary AML cells while sparing their normal counterparts. Furthermore, the combination regimen significantly suppressed AML …


An Evolutionarily Nascent Architecture Underlying The Formation And Emergence Of Biomolecular Condensates, Nima Jaberi-Lashkari, Byron Lee, Fardin Aryan, Eliezer Calo Aug 2023

An Evolutionarily Nascent Architecture Underlying The Formation And Emergence Of Biomolecular Condensates, Nima Jaberi-Lashkari, Byron Lee, Fardin Aryan, Eliezer Calo

Faculty, Staff and Student Publications

Biomolecular condensates are implicated in core cellular processes such as gene regulation and ribosome biogenesis. Although the architecture of biomolecular condensates is thought to rely on collective interactions between many components, it is unclear how the collective interactions required for their formation emerge during evolution. Here, we show that the structure and evolution of a recently emerged biomolecular condensate, the nucleolar fibrillar center (FC), is explained by a single self-assembling scaffold, TCOF1. TCOF1 is necessary to form the FC, and it structurally defines the FC through self-assembly mediated by homotypic interactions of serine/glutamate-rich low-complexity regions (LCRs). Finally, introduction of TCOF1 …


Mapping The Evolution Of T Cell States During Response And Resistance To Adoptive Cellular Therapy, Pavan Bachireddy, Elham Azizi, Cassandra Burdziak, Vinhkhang N Nguyen, Christina S Ennis, Katie Maurer, Cameron Y Park, Zi-Ning Choo, Shuqiang Li, Satyen H Gohil, Neil G Ruthen, Zhongqi Ge, Derin B Keskin, Nicoletta Cieri, Kenneth J Livak, Haesook T Kim, Donna S Neuberg, Robert J Soiffer, Jerome Ritz, Edwin P Alyea, Dana Pe'er, Catherine J Wu Aug 2023

Mapping The Evolution Of T Cell States During Response And Resistance To Adoptive Cellular Therapy, Pavan Bachireddy, Elham Azizi, Cassandra Burdziak, Vinhkhang N Nguyen, Christina S Ennis, Katie Maurer, Cameron Y Park, Zi-Ning Choo, Shuqiang Li, Satyen H Gohil, Neil G Ruthen, Zhongqi Ge, Derin B Keskin, Nicoletta Cieri, Kenneth J Livak, Haesook T Kim, Donna S Neuberg, Robert J Soiffer, Jerome Ritz, Edwin P Alyea, Dana Pe'er, Catherine J Wu

Faculty, Staff and Student Publications

No abstract provided.


Two New Species Of Guatemalan Colyphus Spinola (Coleoptera: Cleridae: Clerinae), Jacques Rifkind Aug 2023

Two New Species Of Guatemalan Colyphus Spinola (Coleoptera: Cleridae: Clerinae), Jacques Rifkind

Insecta Mundi

Colyphus zacki new species and Colyphus monzoni new species (Coleoptera: Cleridae: Clerinae) are described from Guatemala.

The genus Colyphus Spinola was most recently revised by Ekis (1977), who recognized 16 species, distributed from Mexico to Panama. Since then, four new species have been described (Colyphus hansoni Rifkind, C. ska Rifkind and Barr, C. lamed Rifkind, and C. martinezi Rifkind) and four species (Enoclerus guatemalensis (Gor­ham), E. pictus (Gorham), E. rutilus (Gorham), and Thanasimus subviolaceus Gorham) have been transferred to the genus (Rifkind and Barr 2011; Rifkind 2014). With the two new species described herein, the total known Colyphus …


One Cluster Per Condition Is Not A Valid Design In Cluster-Randomized Trials Comment On Wang Et Al The Effect Of Different Physical Exercise Programs On Physical Fitness Among Preschool Children: A Cluster-Randomized Controlled Trial Int J Environ Res Public Health 2023, 20, 4254, Yasaman Jamshidi-Naeini, Armando Pena, Abu Bakkar Siddique, Andrew W Brown, David B Allison Aug 2023

One Cluster Per Condition Is Not A Valid Design In Cluster-Randomized Trials Comment On Wang Et Al The Effect Of Different Physical Exercise Programs On Physical Fitness Among Preschool Children: A Cluster-Randomized Controlled Trial Int J Environ Res Public Health 2023, 20, 4254, Yasaman Jamshidi-Naeini, Armando Pena, Abu Bakkar Siddique, Andrew W Brown, David B Allison

Children’s Nutrition Research Center Staff Publications

Wang et al. [...].


Addendum: Transformative Reimagination: A Framework For A Vincentian College Of Business, Krieg Tidemann, Madhurima (Rima) Bhattacharyay, Kris Principe Aug 2023

Addendum: Transformative Reimagination: A Framework For A Vincentian College Of Business, Krieg Tidemann, Madhurima (Rima) Bhattacharyay, Kris Principe

Journal of Vincentian Social Action

The mission identity and intellectual tradition of Vincentian schools of business affords a unique opportunity for these institutions to produce business leaders prepared to address systemic breakdowns in business ethics and corporate social responsibility. In order to achieve this goal, this paper proposes the HEET (Hire Encourage Equip Train) framework for mission integration. At the heart of the HEET framework is a recognition that successful mission integration requires college-level administrators who promote mission integration throughout the curriculum and center its importance within the strategic operations of the school of business. As every component of HEET centers on developing an industry-leading …


Combination Treatment Of Pembrolizumab With Dc-Cik Cell Therapy For Advanced Hepatocellular Carcinoma: A Case Report, Shao Min Huang, Long-Bin Jeng, Woei-Cherng Shyu, Hung-Yao Chen Aug 2023

Combination Treatment Of Pembrolizumab With Dc-Cik Cell Therapy For Advanced Hepatocellular Carcinoma: A Case Report, Shao Min Huang, Long-Bin Jeng, Woei-Cherng Shyu, Hung-Yao Chen

BioMedicine

Background: Recently, immunotherapy has emerged as a promising method for advanced HCC treatment. There are several clinical trials and meta-analyses of immune checkpoint inhibitors and immune cell therapy, but clinical evidence on the combination of these two therapies is lacking. Case description: A 66-year-old man with chronic hepatitis B-related cirrhosis complained of acute abdominal pain in an emergency department of a hospital. On exams, there was a palpable mass in the right upper quadrant of his abdomen. Contrast-enhanced abdominal computed tomography showed a large tumor in the right lobe, 13 cm x 17cm in size, and right portal vein thrombosis. …


Hipoxia Modulates The Secretion Of Growth Factors In Of Human Umbilical Cord-Derived Mesenchymal Stem Cells, Arfianti Arfianti, Ulfah Ulfah, Leopold Sampetua Hutabarat, Agnes Ivana G, Anisa Dwi Budiarti, Nabilla Sonia Sahara, Nicko Pisceski Kusika Saputra Aug 2023

Hipoxia Modulates The Secretion Of Growth Factors In Of Human Umbilical Cord-Derived Mesenchymal Stem Cells, Arfianti Arfianti, Ulfah Ulfah, Leopold Sampetua Hutabarat, Agnes Ivana G, Anisa Dwi Budiarti, Nabilla Sonia Sahara, Nicko Pisceski Kusika Saputra

BioMedicine

Background: Mesenchymal stem cell (MSC) has great potential as therapies due its ability to regenerate tissue damage and promote tissue homeostasis. Preconditioning of MSC in low oxygen concentration has been shown to affect the therapeutic potential of these cells. This study aimed to compare the characteristic and secretion of trophic factors of MSCs cultured under hypoxia and normoxia. Methods: MSCs were isolated from Wharton's jelly of human umbilical cord (UC) tissue by explant method and characterized by flow cytometry. Following 24 hours of CoCl2induced hypoxic culture, the viability and metabolic activity of MSC were analyzed by trypan blue exclusion test …


Evaluation Of Sars-Cov-2 Infection Risks After Primary Vaccination With Bnt162b2, Bbibp-Corv, Or Chadox1-Ncov-19 And After Homologous And Heterologous Booster Vaccinations With These Vaccines And Evaluation Of Sars-Cov-2 Reinfection Profiles, Soulandi Djorwé, Amale Bousfiha, Néhémie Nzoyikorera, Joseph Nyandwi, Bellamine Kawthar, Abderrahim Malki Aug 2023

Evaluation Of Sars-Cov-2 Infection Risks After Primary Vaccination With Bnt162b2, Bbibp-Corv, Or Chadox1-Ncov-19 And After Homologous And Heterologous Booster Vaccinations With These Vaccines And Evaluation Of Sars-Cov-2 Reinfection Profiles, Soulandi Djorwé, Amale Bousfiha, Néhémie Nzoyikorera, Joseph Nyandwi, Bellamine Kawthar, Abderrahim Malki

BioMedicine

Background: The emergence of SARS-CoV-2 variants has significantly increased the number of cases of COVID-19 among vaccinated individuals, raising concerns about the effectiveness of current vaccines. The aim of this study was to analyze the SARS-CoV-2 infection risks after primary vaccination with BNT162b2, BBIBP-CorV, or ChAdOx1-nCOV-19 and after homologues and heterologous booster vaccinations with these vaccines, as well as the profiles of reinfected patients. Methods: We analyzed retrospectively 1082 patients vaccinated or unvaccinated with BNT162b2, BBIBP-CorV, and/or ChAdOx1nCoV-19 vaccines to determine their SARS-CoV2 infection statuses using the reverse transcription-polymerase chain reaction (RT-PCR) in addition to their clinical features. The infection …


Evaluation Of Antibacterial Efficacy Of Lawsonia Inermis Linn (Henna) On Periodontal Pathogens Using Agar Well Diffusion And Broth Microdilution Methods: An In-Vitro Study, Şevki Güler, Damla Torul, Sevda Kurt-Bayrakdar, Emine Kübra Tayyarcan, Çağrı Çamsarı, İsmail Hakkı Boyacı Aug 2023

Evaluation Of Antibacterial Efficacy Of Lawsonia Inermis Linn (Henna) On Periodontal Pathogens Using Agar Well Diffusion And Broth Microdilution Methods: An In-Vitro Study, Şevki Güler, Damla Torul, Sevda Kurt-Bayrakdar, Emine Kübra Tayyarcan, Çağrı Çamsarı, İsmail Hakkı Boyacı

BioMedicine

Background: Although widely explored in medicine, limited evidence exists in the literature regarding the efficacy of Lawsonia inermis Linn (henna) in the dental field. Aim: This study aimed to investigate the antibacterial effect of henna on Aggregatibacter actinomycetemcomitans and Porphyromonas gingivalis in vitro. Methods: The agar well diffusion and broth microdilution methods were used to evaluate the antibacterial effect of henna extracts. Dimethyl sulfoxide was used to prepare the ethanol extract of henna, and distilled water was used to prepare the water extract. For both ethanol and water extracts, 4 different concentrations were prepared as 15, 30, 60, and 120 …


Age-Specific Percentile-Based Prostate-Specific Antigen Cutoff Values Predict The Risk Of Prostate Cancer: A Single Hospital Observation, Teng-Fu Hsieh, Hung-Lin Chen, Ying-Fang Hsia, Che-Chen Lin, Hsiu-Yin Chiang, Min-Yen Wu, Sheng-Hsuan Chen, Po-Fan Hsieh, Hsi-Chin Wu, Han Chang, Chin-Chi Kuo Aug 2023

Age-Specific Percentile-Based Prostate-Specific Antigen Cutoff Values Predict The Risk Of Prostate Cancer: A Single Hospital Observation, Teng-Fu Hsieh, Hung-Lin Chen, Ying-Fang Hsia, Che-Chen Lin, Hsiu-Yin Chiang, Min-Yen Wu, Sheng-Hsuan Chen, Po-Fan Hsieh, Hsi-Chin Wu, Han Chang, Chin-Chi Kuo

BioMedicine

Background Testing for prostate-specific antigen (PSA) is often recommended for men with a potential risk of prostate cancer (PCa) before requiring advanced examination. However, the best PSA cutoff value remains controversial. Object We compared the predictive performance of age-specific percentile-based PSA thresholds with a conventional cutoff of >4 ng/mL for the risk of PCa. Methods We included men who received PSA measurements between 2003 and 2017 in a medical center in Taiwan. Logistic regression modeling was used to assess the association between age-specific percentile-based PSA thresholds and PCa risk in age subgroups. We further applied C-statistic and decision curve analysis …


Endometrial Fluid Biomarkers And Their Potential As Predictors Of Successful Embryo Implantation, Ana Rita Alves, Margarida Figueiredo Dias, Margarida Silvestre Aug 2023

Endometrial Fluid Biomarkers And Their Potential As Predictors Of Successful Embryo Implantation, Ana Rita Alves, Margarida Figueiredo Dias, Margarida Silvestre

BioMedicine

Background: Embryo implantation is a complex biological process which requires synchronized dialogue between the receptive endometrium and the blastocyst. The endometrium, however, is only receptive to embryo implantation for a very short period. Recurrent implantation failure (RIF) is a major challenge in assisted reproductive techniques mainly due to impaired receptivity, but there is still a need for a reliable and valid clinical test to assess endometrial receptiveness, especially at embryo transfer time. The aim of this review is to investigate what is currently known about the contribution of endometrial fluid (EF) to endometrial receptivity by identifying its potential biomarkers. Methods: …


Sctiger: A Deep-Learning Method For Inferring Gene Regulatory Networks From Case Versus Control Scrna-Seq Datasets., Madison Dautle, Shaoqiang Zhang, Yong Chen Aug 2023

Sctiger: A Deep-Learning Method For Inferring Gene Regulatory Networks From Case Versus Control Scrna-Seq Datasets., Madison Dautle, Shaoqiang Zhang, Yong Chen

College of Science & Mathematics Departmental Research

Inferring gene regulatory networks (GRNs) from single-cell RNA-seq (scRNA-seq) data is an important computational question to find regulatory mechanisms involved in fundamental cellular processes. Although many computational methods have been designed to predict GRNs from scRNA-seq data, they usually have high false positive rates and none infer GRNs by directly using the paired datasets of case-versus-control experiments. Here we present a novel deep-learning-based method, named scTIGER, for GRN detection by using the co-differential relationships of gene expression profiles in paired scRNA-seq datasets. scTIGER employs cell-type-based pseudotiming, an attention-based convolutional neural network method and permutation-based significance testing for inferring GRNs among …


The Effects Of High Concentration Of Bicarbonate Applications On Kiwifruit Genotypes With Different Ploidy Levels On Some Growth Parameters Of Leaves, Zeynab Alizadeh, Mahmood Ghasemnezhad, Mahmood Fazeli Sangani, Ari̇f Atak Aug 2023

The Effects Of High Concentration Of Bicarbonate Applications On Kiwifruit Genotypes With Different Ploidy Levels On Some Growth Parameters Of Leaves, Zeynab Alizadeh, Mahmood Ghasemnezhad, Mahmood Fazeli Sangani, Ari̇f Atak

Turkish Journal of Agriculture and Forestry

The high concentration of bicarbonate ion ( HCO₃-) in irrigation water or soil is a limiting factor for the growth and production of kiwifruit vineyards. Especially the high concentration of bicarbonate in irrigation water can cause negative effects on the development of many plants at different rates. In this study, the effects of different concentrations (0, 170, 350, and 550 mg L-1) of bicarbonate ion (HCO₃-) in irrigation water on six kiwifruit seedlings (DA1, DA2, CK1, CK2, CK3, AA) were studied in the greenhouse condition. The six kiwifruit seedlings used in the study belong to a total of 3 different …


Managed Aquifer Recharge: Installation And Early Evaluation Of Infiltration Galleries In The Cache River Critical Groundwater Area, Northeast Arkansas, Allegra Christiane Pieri Aug 2023

Managed Aquifer Recharge: Installation And Early Evaluation Of Infiltration Galleries In The Cache River Critical Groundwater Area, Northeast Arkansas, Allegra Christiane Pieri

Student Theses and Dissertations

Arkansas ranks third in the nation for irrigated land, with water primarily sourced from the Mississippi River Valley alluvial (MRVA) aquifer. Intensive irrigation combined with limited natural recharge due to the region’s geology has led to the designation of critical groundwater areas. The Cache River Critical Groundwater Area (CRCGA) has undergone severe declines, impacting agricultural production and threatening aquifer depletion. This thesis outlines the construction of two infiltration galleries for managed aquifer recharge (MAR) and investigated the early stages of their capacity to recharge the MRVA aquifer. The infiltration galleries and MRVA aquifer were physically capable of accepting reservoir water …


Chemical And Biochemical Advantages Of The 'Hicaznar' Pomegranate Variety Over 'Katina' And 'Suruc' Varieties Grown In The Same Ecology, Beki̇r Erol Ak, Di̇cle Roza Sayi̇ner, İbrahi̇m Hali̇l Hati̇poğlu, Bi̇rgül Di̇kmetaş Aug 2023

Chemical And Biochemical Advantages Of The 'Hicaznar' Pomegranate Variety Over 'Katina' And 'Suruc' Varieties Grown In The Same Ecology, Beki̇r Erol Ak, Di̇cle Roza Sayi̇ner, İbrahi̇m Hali̇l Hati̇poğlu, Bi̇rgül Di̇kmetaş

Turkish Journal of Agriculture and Forestry

Pomegranate cultivation has spread to various parts of the world. Pomegranate has been grown almost anywhere in the world, mostly in Iran, India, China, Turkey and the United States. ‘Hicaznar’, ‘Katina’ and ‘Suruç’ pomegranate varieties were used as materials in this study. Analyses of antioxidants, sugars, anthocyanins, organic acids, and colourless phenolic compounds in the juices of these fruits were performed by HPLC and DPPH methods. According to our findings, the highest antioxidant capacity was found in ‘Hicaznar’ variety (19.42 mmol trolox L–1). ‘Hicaznar’ variety had high sugar composition in terms of glucose, fructose, and total sugars while the sucrose …


Assessment Of Genetic Diversity And Search For Plum Pox Virus Resistance Alleles Of Apricot (Prunus Armeniaca L.) Genotypes Spread In Azerbaijan Using Ssr Markers, Ami̇na Raki̇da, Necati̇ Çeti̇nsağ, Zeynal Akparov, Logman Bayramov, Sevda Babayeva, Vusala Izzatullayeva, Mehraj Abbasov, Sezai̇ Erci̇şli̇, Kahraman Gürcan Aug 2023

Assessment Of Genetic Diversity And Search For Plum Pox Virus Resistance Alleles Of Apricot (Prunus Armeniaca L.) Genotypes Spread In Azerbaijan Using Ssr Markers, Ami̇na Raki̇da, Necati̇ Çeti̇nsağ, Zeynal Akparov, Logman Bayramov, Sevda Babayeva, Vusala Izzatullayeva, Mehraj Abbasov, Sezai̇ Erci̇şli̇, Kahraman Gürcan

Turkish Journal of Agriculture and Forestry

Apricot is one of the most important stone-fruit plants widely cultivated in Azerbaijan. SSR markers were used to evaluate the genetic diversity of 61 apricot genotypes representing the entire gene pool in Azerbaijan. A total of 138 alleles were produced based on 17 SSR markers with an average of 8.1 alleles per primer. The polymorphism information content (PIC) and expected (He) heterozygosity for individual loci were in the range of 0.42–0.8 (mean 0.68) and 0.52–0.82 (mean 0.72), respectively, indicating the abundant genetic variation in Azerbaijani apricot cultivars. The polymorphisms generated by SSRs were enough to differentiate 95% of genotypes, while …


Expression Of The Genes (Cbf2, Cbf4, Nced1, Myb14, Pld) During Acclimation And De-Acclimation In Dormant Buds Of Chambourcin And 3309 C Grapevine Accessions, Di̇lek Karataş, Hüseyi̇n Karataş Aug 2023

Expression Of The Genes (Cbf2, Cbf4, Nced1, Myb14, Pld) During Acclimation And De-Acclimation In Dormant Buds Of Chambourcin And 3309 C Grapevine Accessions, Di̇lek Karataş, Hüseyi̇n Karataş

Turkish Journal of Agriculture and Forestry

Deacclimatization results in a loss of bud cold-hardiness whereas cold acclimation results in an increase in it. The regulation of the buds’ cold acclimation and deacclimation in woody plants are poorly understood. This study indicated that differential gene expression during acclimation and transition of the buds from acclimation to deacclimation in the light of dormancy and bud water content. One-year-old vine latent bus of cv. Chambourcin vines and 3309 C (Vitis riparia x Vitis rupestris) were used for the analyses. Five genes (CBF2, CBF4, NCED1, MYB14, and PLD) were selected for quantitative real-time PCR. Quantitative real-time PCR was applied to …


Foliar Application Of Graphene Oxide, Nano-Fe, And Selenium Mitigates Salinity Depression On Ocimum Basilicum, Lamia Vojodi Mehrabani, Mohammad Bagher Hassanpouraghdam, Farzad Rasouli, Zühal Okcu, Romina Alina Marc Aug 2023

Foliar Application Of Graphene Oxide, Nano-Fe, And Selenium Mitigates Salinity Depression On Ocimum Basilicum, Lamia Vojodi Mehrabani, Mohammad Bagher Hassanpouraghdam, Farzad Rasouli, Zühal Okcu, Romina Alina Marc

Turkish Journal of Agriculture and Forestry

An experiment was conducted to investigate the effects of salinity stress and foliar applications of graphene oxide, nano-Fe, and selenium on basil’s growth and physiological responses. The results revealed that the treatments affected plant dry weight, essential oil, and malondialdehyde content, relative water content as well as hydrogen peroxide, proline, sodium, iron, and phosphorus content, and sodium to potassium ratio. The highest plant dry weight and essential oil content were recorded under no-salinity and 50 mM salinity × iron nanoparticle foliar use, while 100 mM salinity stress with no foliar spraying increased the levels of malondialdehyde, sodium content, and sodium-to-potassium …