Life Sciences Commons^™

Deep Filtered Back Projection For Ct Reconstruction, X I Tan, Xuan Liu, Kai Xiang, Jing Wang, Shan Tan

Faculty, Staff and Student Publications

Filtered back projection (FBP) is a classic analytical algorithm for computed tomography (CT) reconstruction, with high computational efficiency. However, images reconstructed by FBP often suffer from excessive noise and artifacts. The original FBP algorithm uses a window function to smooth signals and a linear interpolation to estimate projection values at un-sampled locations. In this study, we propose a novel framework named DeepFBP in which an optimized filter and an optimized nonlinear interpolation operator are learned with neural networks. Specifically, the learned filter can be considered as the product of an optimized window function and the ramp filter, and the learned …

Ecosystem Functions And Services​ Landscaping For Water Quality – April 30, 2024​ Sunapee, Nh​, Julia Peterson

UNH Cooperative Extension

No abstract provided.

Variation In The Fear Response Of Atlantic Sand Fiddler Crabs (Leptuca Pugilator) To Anthropogenic Disturbance, Katrina L. Buttram

College of Graduate Studies: Theses & Dissertations

Leptuca pugilator is a common inhabitant of southeast Georgia salt marshes. This study examined the boldness of Leptuca pugilator across environmental conditions and human impacts. Here, boldness was defined as time taken to reemerge from a burrow after a fear stimulus. I hypothesized that crabs would vary in their boldness based on their surroundings, reproductive timing, and sex. Field and experimental trials were conducted to isolate which factors most influence boldness. Field trials were conducted at four sites varying in human influence throughout the breeding season. During each survey, vegetation height, substrate temperature, average burrow width, burrow count, and distance …

Hybridization And Duplex Stability Of Peptide Nucleic Acid Containing An Azobenzene Switch, Carmen J. Velasquez

College of Graduate Studies: Theses & Dissertations

Light-driven molecular switches that can be turned on and off on demand have found many biological applications. For DNA, RNA, and synthetic derivatives, the switch can be used to interfere with a hybridization event with a complementary strand. To explore this potential, we have synthesized three light-sensitive PNA which have an azobenzene group (PNA-5azo5 and PNA-4azo4), and two azobenzene groups (PNA-2azo5azo2) as part of the PNA backbone. UV experiments were used to verify the conversion to the cis-isomer from the initial trans state for all of the single-stranded Azo-PNA ( PNA-5azo5, PNA-4azo4, and PNA-2azo5azo2) by irradiating at 365 nm …

Mammalian Biodiversity On Greenways Across An Urban-To-Rural Gradient, Brooklyn C. Zwinklis

College of Graduate Studies: Theses & Dissertations

Large-scale urbanization is one of the leading causes of biodiversity loss on a global scale due to habitat loss and fragmentation. This has created a need to investigate ways to mitigate the damage caused by urban development, such as studying whether green spaces in urban areas can serve as means of preserving mammalian biodiversity in cities. This study specifically focused on greenways as they are understudied when compared to other green spaces, such as parks and cemeteries. Greenways are linear tracts of paved land, usually designed for human recreational activities. However, their benefits to wildlife have not been well researched. …

Aggressive And Non-Aggressive Behaviors In Mixed And Non-Mixed Dorymyrmex Smithi And Dorymyrmex Bureni Colonies Of Southeastern Georgia, Usa, Renee K. Nowicki

College of Graduate Studies: Theses & Dissertations

Dorymyrmex species, ‘pyramid’ or ‘cone’ ants, are Dolichoderines distributed across North America. Two relatively well-studied species, Dorymyrmex smithi and Dorymyrmex bureni, are commonly found throughout southeastern Georgia. These species are part of a socially parasitic relationship while simultaneously having starkly different colony structures. Dorymyrmex smithi is a polydomous, polygynous species with colonies that are often expansive, at times having hundreds to thousands of nests per colony. Dorymyrmex smithi is a temporary social parasite of D. bureni, a monodomous, monogynous species. The specific mechanism of this parasitism is currently unknown. Preliminary behavioral assay data from a limited number of …

Factors Associated With Hepatitis C-Related Hospitalizations And Inpatient Mortality In The United States, Pre- And Post-Onset Of The Covid-19 Pandemic, Christina R. Samuel

College of Graduate Studies: Theses & Dissertations

Background: Hepatitis C is a significant public health problem in the United States and imposes a substantial burden on the healthcare system. Previous research shows that the COVID-19 pandemic response efforts have overshadowed hepatitis C testing and treatment measures in health care settings across the country. The purpose of this study was to describe and examine the factors associated with hepatitis C-related hospitalizations and inpatient mortality in the United States, pre- and post-onset of the COVID-19 pandemic. Methods: Data were obtained from the 2019-2020 National Inpatient Sample database. The study population included persons aged ≥18 years with hepatitis C-related inpatient …

Footwear Selection, Foot Type, And Running Biomechanics Of Male Distance Runners With Previous Running Related Injury: A Case Series, Diego Castro I. Diaz

College of Graduate Studies: Theses & Dissertations

With the rise in popularity of running, running shoe companies have researched and designed several models aimed at the purpose of providing comfort and aiding in the decrease of running related injuries. Technology was developed for running shoes to control forefoot and rearfoot impact forces and rearfoot motion during running. However, there is no overwhelming evidence supporting the notion that footwear corresponding to foot type leads to a decrease in running injuries. Thus, the purpose of this study was to describe footwear selection, foot type, and running biomechanics in previously injured male distance runners. Six total participants completed this case …

Evaluating Reactive Gliosis In The Brain Of Adult Zebrafish Following The Ingestion Of Nanopolystyrene., Hannah A. Kelehear

College of Graduate Studies: Theses & Dissertations

Polystyrene nanoplastics are one of the most pervasive environmental contaminants and have been shown to infiltrate multiple organ systems following ingestion. Studies in several animal models and humans have demonstrated that nanoplastics can cross the blood-brain barrier. Additionally, there is evidence that plastics will induce an inflammatory response in the brain involving reactive gliosis of microglia and astrocytes. This process has yet to be thoroughly investigated in the zebrafish model system in the context of micro-/nanoplastic ingestion. In the current study, we examined microglial and astrocytic phenotypes in the adult zebrafish telencephalon after consuming food contaminated with 44 nm polystyrene …

Inside Out: The Effects Of Water Quality And Stocking Density On Oyster Aquaculture In Georgia, Alexandra B. Raduege

College of Graduate Studies: Theses & Dissertations

Oyster growing is one of the oldest known forms of aquaculture, but this ancient practice has only recently entered Georgia’s waters on a commercial scale. With any burgeoning industry, many questions need to be answered to maximize productivity. In the case of oyster aquaculture, growers must maximize both economic and ecological productivity for the long-term success of the industry. Water quality is of particular concern for the health and wellbeing of cultured oysters with the possibility that certain husbandry decisions made by oyster growers could adversely affect the growth and condition of their oysters. This study examines the influence of …

Dual Suppression Of Glossina Pallidipes Using Entomopathogenic Fungal-Based Biopesticides And Sterile Insect Technique, Fidelis L.O. Ombura, Adly M.M. Abd-Alla, Komivi S. Akutse, Steven Runo, Paul O. Mireji, Rosemary Bateta, Joseck E. Otiwi, Inusa J. Ajene, Fathiya M. Khamis

All Peer-Reviewed Publications

Tsetse flies and trypanosomosis significantly impact bovine production and human health in sub-Saharan Africa, exacerbating underdevelopment, malnutrition, and poverty. Despite various control strategies, long-term success has been limited. This study evaluates the combined use of entomopathogenic fungi (EPF) and the sterile insect technique (SIT) to combat tsetse flies. Eleven EPF isolates were tested against teneral males of Glossina pallidipes, focusing on mortality rates, radial growth, and impacts on fly fitness. Temperature effects on conidial growth, sporulation, and spore yield of SIT-compatible/tolerant strains were also assessed. The fungal isolates significantly influenced mortality rates in both unirradiated and irradiated (SIT-treated) males (p <  0.0001). Metarhizium anisopliae strains ICIPE 20, ICIPE 32, ICIPE 41, ICIPE 62, ICIPE 78, and Beauveria bassiana ICIPE 603 showed higher SIT compatibility/tolerance with LT50 values of 11–30 days, compared to other more virulent isolates with LT50 values of 4–9 days. Temperature significantly affected the radial growth of SIT-compatible EPF strains (p <  0.0001), with M. anisopliae ICIPE 78 exhibiting the fastest conidia growth at 25°C. Spore yield varied significantly across temperatures (15–40°C), and the thermal range for conidia germination of SIT-compatible strains was 8.1–45.4°C, with an optimal range of 26.7–31.1°C. Moreover, infected unirradiated females and irradiated males (donors) successfully transmitted conidia to untreated flies (receivers) without significant differences in survival rates (p = 0.6438) and no observed sex dimorphism. Our findings highlight the potential of combining EPF and SIT as a novel dual approach that could effectively and synergistically suppress tsetse fly populations.

Insect Frass Fertilizer As A Regenerative Input For Improved Biological Nitrogen Fixation And Sustainable Bush Bean Production, Agnes Chepkorir, Dennis Beesigamukama, Harun I. Gitari, Shaphan Y. Chia, Sevgan Subramanian, Sunday Ekesi, Birachi Eliud Abucheli, Jean Claude Rubyogo, Theodore Zahariadis, Gina Athanasiou, Aikaterini Zachariadi, Vasileios Zachariadis, Abdou Tenkouano, Chrysantus M. Tanga

All Peer-Reviewed Publications

Bush bean (Phaseolus vulgaris L.) production is undermined by soil degradation and low biological nitrogen fixation (BNF) capacity. This study evaluated the effect of black soldier fly frass fertilizer (BSFFF) on bush bean growth, yield, nutrient uptake, BNF, and profitability, in comparison with commercial organic fertilizer (Phymyx, Phytomedia International Ltd., Kiambu, Kenya), synthetic fertilizer (NPK), and rhizobia inoculant (Biofix, MEA Fertilizers, Nairobi, Kenya). The organic fertilizers were applied at rates of 0, 15, 30, and 45 kg N ha−1 while the NPK was applied at 40 kg N ha−1, 46 kg P ha−1, and 60 kg K ha−1. The fertilizers …

A Worldwide Overview Of The Status And Prospects Of Edible Insect Production, R. Caparros Megido, F. Francis, E. Haubruge, P. Le Gall, J. K. Tomberlin, C. D. Miranda, H. R. Jordan, C. J. Picard, M. J.M. Pino, J. Ramos-Elordy, E. Katz, K. B. Barragán-Fonseca, E. M. Costa-Neto, R. Ponce-Reyes, G. Wijffels, S. Ghosh, C. Jung, Y. S. Han, B. Conti, A. Vilcinskas, C. M. Tanga, M. O. Kababu, D. Beesigamukama, J. A. Morales Ramos, A. Van Huis

All Peer-Reviewed Publications

There has been continuous and growing interest in edible insects. Worldwide, various levels of insect farming are emerging, ranging from small domestic farms to vertical farms reaching heights of 36 meters, accommodating several million growing insects. The appeal of insects lies in their ecological benefits, as they contribute to the valorization of unde-rutilized organic residues while requiring minimal space and water. The selection of insect species is influenced not only by their biology and behavior but also by local preferences and customs, varying with the scale of production and geographi-cal location. This review article aims to provide an updated overview …

Molecular Characterization Of Fecundity-Related Gene Regions In Some Of Türkiye’S Native Sheep Breeds, Ramazan Aymaz, Fulya Özdi̇l, Yalçın Yaman

Turkish Journal of Veterinary & Animal Sciences

In this study, the BMP15 and GDF9 gene regions were examined through DNA sequencing in some native sheep breeds of Türkiye (Kıvırcık, Karacabey Merino, Chios, Gökçeada, Çine Çaparı, Awassi, and Karakacan). In the BMP15 exon 2 region, two single nucleotide polymorphisms (SNPs) were identified: one synonymous SNP, P248P (proline/proline), and one nonsynonymous SNP, L251P (leucine/proline), resulting in a missense mutation. In the GDF9 exon 1 region, only a nonsynonymous SNP, R87H (histidine/ arginine), was found. In the GDF9 exon 2 region, four SNPs were identified: two nonsynonymous SNPs, E241K (glutamate/lysine) and V332I (valine/isoleucine), and two synonymous SNPs, L159L (leucine/leucine) and …

Behavioral Activity Budget Of Grower Beetal Kids Offered Total Mixed Ration Under Stall-Fed System, Priya Dhattarwal, Mandeep Singla, Sandeep Kaswan, Ravinder Singh Grewal, Neeraj Kashyap, Dalpat Singh Malik

Turkish Journal of Veterinary & Animal Sciences

This study investigates the behavioral activities of grower Beetal kids fed in a conventional method-control group manner orgiven total mixed ration (TMR) (i.e. hay-based - T1 and green fodder-based - T2). Twenty-four weaned Beetal kids were enrolled andrandomly distributed into 3 groups based on their body weight, sex, and age. Behavioral observations were recorded 30 min after givingexperimental ration to the kids using the scan sampling method for 1 h, which inferred time spent eating normally, eating with forelegson the cage, and eating with forelegs on the feeders; standing idle and urination were significantly higher in the control group than …

The Stereological And Morphometrical Investigation Of Pars Lumbalis Of The Spinal Cord Innew Zealand Rabbit, Berna Duman, İftar Gürbüz

Turkish Journal of Veterinary & Animal Sciences

In the study, 12 (6 females, 6 males) healthy adult New Zealand rabbits were used to examine the morphometrical andstereological values. White matter, gray matter and total segment volume of the segments in the pars lumbalis were calculated byCavalieri’s principle. The findings were grouped according to sexand statistically evaluated. As a result, 38% of the length of the spinalcord in rabbits belonged to the pars lumbalis. The morphometric parameters were not statistically different between male and femalerabbits (p > 0.05). The segment with the biggest volume was L5. White matter’s greatest volume was the L4 segment. The volume of graymatter was …

Predictors On Mental Health Of Owning Cats And Dogs, Çağri Çağlar Si̇nmez, Ahmet Meti̇n, Emre Tüfekçi̇, Ali̇ İlteri̇ş Aykun, Vehbi̇ Güneş

Turkish Journal of Veterinary & Animal Sciences

The common consensus is that owning pets affects human health positively. However, the effects of owning pets on mental health are still controversial. Therefore, the present study aimed to determine the possible associated with depression, anxiety, stress, and owning cats and dogs in Türkiye. Additionally, the potential impact of personality traits on this relationship was examined. This study included 636 participants, of whom 52% were female (Mage = 33.02, SD = 15.78). Data was obtained by using a DASS-21 and the Big Five Personality Inventory. The findings revealed that owning cats and dogs was a promotive factor against depression (DE) …

Trends In Monitoring Of Australia’S Threatened Birds (1990–2020): Much Improved But Still Inadequate, Simon J. Verdon, Robert A. Davis, Ayesha Tulloch, Sarah M. Legge, David M. Watson, John C. Z. Woinarski, G. Barry Baker, Joris Driessen, Hayley M. Geyle, Hugh Possingham, Stephen T. Garnett

Research outputs 2022 to 2026

Monitoring is vital to conservation, enabling conservation scientists to detect population declines, identify threats and measure the effectiveness of interventions. However, not all threatened taxa are monitored, monitoring quality is variable, and the various components of monitoring are likely to differ in their rates of improvement over time. We assessed the presence of monitoring and monitoring quality, using a range of metrics, for all Australia’s threatened bird taxa from 1990 to 2020 (four assessments spanning 30 years). We used our assessments to understand decadal trends in the number of taxa monitored; monitoring quality; and the groups that conduct monitoring. The …

Editorial - Contemporary Marine Science, Its Utility And Influence On Regulation And Government Policy, Piers Larcombe, Angus Morrison-Saunders, Peter V. Ridd

Research outputs 2022 to 2026

The purpose of this Research Topic is to evaluate the quality of contemporary marine science and to examine relationships between science, regulation and government policy in the marine environment. The quality of marine science matters; not just to advance knowledge on understanding marine ecosystems, but also to guide marine management. ...

Storms Facilitate Airborne Dna From Leaf Fragments Outside The Main Tree Pollen Season, Mary Hanson, Geoff Petch, Beverley Adams-Groom, Thor Bjørn Ottosen, Carsten A. Skjøth

Research outputs 2022 to 2026

Bioaerosols are useful indicators of plant phenology and can demonstrate the impacts of climate change on both local and regional scales (e.g. pollen monitoring/flowering phenology). Analysing bioaerosols with eDNA approaches are becoming more popular to quantify the diversity of airborne plant environmental DNA (eDNA) and flowering season of plants and trees. Leaf abscission from broadleaved trees and other perennial species can also indicate the status of plant health in response to climate. This happens primarily during autumn in response to seasonal growth conditions and environmental factors, such as changing photoperiod and reduced temperatures. During this period biological material is released …

Acidophile Microbiology: From Extreme Environments To Biotechnological Applications, Elizabeth L.J. Watkin, Ivan Nancucheo, Axel Schippers

Research outputs 2022 to 2026

No abstract provided.

Evaluation Of Tomato Germplasm Against Tomato Brown Rugose Fruit Virus And Identification Of Resistance In Solanum Pimpinellifolium, Namrata Jaiswal, Bindisha Chanda, Andrea Gilliard, Ainong Shi, Kai-Shu Ling

Horticulture Faculty Publications and Presentations

The tomato is one of the most important vegetable crops grown worldwide. Tomato brown rugose fruit virus (ToBRFV), a seed-borne tobamovirus, poses a serious threat to tomato production due to its ability to break the resistant genes (Tm-1, Tm-2, Tm-2²) in tomatoes. The objective of this work was to identify new resistant source(s) of tomato germplasm against ToBRFV. To achieve this aim, a total of 476 accessions from 12 Solanum species were tested with the ToBRFV US isolate for their resistance and susceptibility. As a result, a total of 44 asymptomatic accessions were identified as resistant/tolerant, including thirty-one …

Pigeon Strike!: Solutions For Fermi Questions, October 2024, John Adam

Mathematics & Statistics Faculty Publications

This article, titled "Pigeon strike!: Solutions for Fermi Questions, October 2024," discusses the estimation of various physics-related questions regarding a pigeon striking a window. The author estimates the momentum and kinetic energy of the bird prior to hitting the window, as well as the force, pressure, and wingspan of the bird during impact. The author assumes an inelastic collision between the bird and the window, and provides calculations and explanations for their estimations. The article concludes with the author's observation that the estimated wingspan aligns with that of an adult pigeon.

Assessing Understory Vegetation Response And Fuel Load Levels Following Silvicultural Treatments In Headwaters Forest Reserve, Humboldt County, California, Kyle James Railton, Madison Tatar

Undergraduate Scholarship

Old growth forests are important for ecological resilience, especially in temperate rainforest ecosystems. There are presently 3,000 acres of old growth forest within the 7,472 acres of the Headwaters Forest Reserve (HFR) in Humboldt County, California. Remaining acres were subjected to unsustainable logging practices, such as clearcutting, that resulted in a severely overstocked second-growth forest. The Bureau of Land Management (BLM) created a management plan for the reserve to restore previously harvested areas to their historic condition. The goal for the BLM is to accelerate growth rates of residual forests, to align them on a trajectory of achieving old-growth forest …

Predictors Of Occupational Distress Of Catholic Priests On The Eastern Seaboard Of The United States, Michael D. Kostick, Xihe Zhu, Justin A. Haegele, Pete Baker

Human Movement Studies & Special Education Faculty Publications

With ever-increasing demands placed upon active priests in the United States, insight into protecting their mental health may help strengthen vocational resilience for individual priests. The purpose of this study was to examine the association of individual variables, workplace characteristics, and physical activity participation with occupational distress levels among Catholic priests. A 22-question survey consisting of a demographic questionnaire, the Clergy Occupational Distress Index, and the International Physical Activity Questionnaire was employed to collect individual variables, workplace characteristics, physical activity participation, and occupational distress levels of Catholic priests from the Eastern seaboard of the United States. Regression analyses showed that …

State Barrier Fence - Esperance Extension Project Overview 2024, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

Western Australia’s State Barrier Fence plays an important role in protecting landholders inside the fence by preventing the movement of animal pests, including wild dogs and emus, from pastoral areas into the agricultural regions. It is a state asset which is managed by the Department of Primary Industries and Regional Development.

The original fences (numbers 1, 2 and 3) were constructed between 1902 and 1907. Originally known as the Rabbit Proof Fences, it has also been known as the State Vermin Fence, the Emu Fence and now the State Barrier Fence. Since 2010, the fence has been upgraded to wild …

Bedstraw Eradication Program 2023-24: Annual Report, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

The Bedstraw Eradication Program operates under the Biosecurity and Agricultural Management Industry Funding Scheme (Grains) Regulations 2010.

Approved Plans developed annually for each infested property in consultation with the Grains, Seeds and Hay Industry Management Committee (GSHIMC), the Department of Primary Industries and Regional Development (DPIRD) and the landholders detail management actions, estimated costs and timeframes of agreed actions. DPIRD implements the Program which includes 6 consecutive years of winter spray treatments, followed by a 3-year release protocol and post-eradication monitoring phase. Machinery inspections, quarantining, landholder compliance winter spraying and end of season double-knock herbicide treatments form the key components …

Skeleton Weed Program 2023-24: Annual Report To Grain Growers, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

Skeleton weed is a major pest of grain crops and can significantly reduce grain crop yields by competing for moisture and nutrients (mainly nitrogen), due to its deep perennial root system. Skeleton weed is a declared plant in WA under section 22 of the Biosecurity and Agriculture Management Act (2007) and is assigned to control category 2 (Eradication) for the whole of the State, except in the Narembeen and Yilgarn Shires, where it is category 3 (Management).

Photoluminescence Switching In Quantum Dots Connected With Fluorinated And Hydrogenated Photochromic Molecules, Ephraiem S. Sarabamoun, Jonathan M. Bietsch, Pramod Aryal, Amelia G. Reid, Maurice Curran, Grayson Johnson, Esther H. R. Tsai, Charles W. Machan, Guijun Wang, Joshua J. Choi

Chemistry & Biochemistry Faculty Publications

We investigate switching of photoluminescence (PL) from PbS quantum dots (QDs) crosslinked with two different types of photochromic diarylethene molecules, 4,4'-(1-cyclopentene-1,2-diyl)bis[5-methyl-2-thiophenecarboxylic acid] (1H) and 4,4'-(1-perfluorocyclopentene-1,2-diyl)bis[5-methyl-2-thiophenecarboxylic acid] (2F). Our results show that the QDs crosslinked with the hydrogenated molecule (1H) exhibit a greater amount of switching in photoluminescence intensity compared to QDs crosslinked with the fluorinated molecule (2F). With a combination of differential pulse voltammetry and density functional theory, we attribute the different amount of PL switching to the different energy levels between 1H and 2F molecules which result in different potential barrier …

Evidence Of Direct Interaction Between Cisplatin And The Caspase-Cleaved Prostate Apoptosis Response-4 Tumor Suppressor, Krishna K. Raut, Samjhana Pandey, Gyanendra Kharel, Steven M. Pascal

Chemistry & Biochemistry Faculty Publications

Prostate apoptosis response-4 (Par-4) tumor suppressor protein has gained attention as a potential therapeutic target owing to its unique ability to selectively induce apoptosis in cancer cells, sensitize them to chemotherapy and radiotherapy, and mitigate drug resistance. It has recently been reported that Par-4 interacts synergistically with cisplatin, a widely used anticancer drug. However, the mechanistic details underlying this relationship remain elusive. In this investigation, we employed an array of biophysical techniques, including circular dichroism spectroscopy, dynamic light scattering, and UV–vis absorption spectroscopy, to characterize the interaction between the active caspase-cleaved Par-4 (cl-Par-4) fragment and cisplatin. Additionally, elemental analysis was …