Life Sciences Commons^™

Assessing Sustainability Within The Brewing Industry: A Literature Review And Benchmarking Analysis., Elijah Thomas Miller

Electronic Theses and Dissertations

The goals of this study were twofold: to further examine sustainability within the brewing industry through a literature analysis across four academic journals, and a benchmarking analysis of a Louisville, Kentucky brewery’s resource consumption and emissions production. Publications related to the brewing industry were examined for the presence of sustainability keywords: “efficiency, sustainability, carbon footprint, climate change and greenhouse gas”. Benchmarking examined the local brewery’s primary production facility to determine their performance compared to other surveyed breweries pursuing sustainability across the country. Literature examination found noticeable discrepancies between the appearance of sustainability topics within article abstracts and their discussion within …

Inhibition Of Pro-Inflammatory Lipid Mediators By Yersinia Pestis., Amanda Brady

Electronic Theses and Dissertations

Yersinia pestis causes the human disease known as plague. A key manifestation of plague is a delayed inflammatory response. Because this delay in inflammation is required for virulence, I was interested in defining the molecular mechanisms used by Y. pestis to evade immune recognition. Eicosanoids are produced early during infection and necessary to initiate a rapid inflammatory response. Despite the importance of these lipids in mediating inflammation, the role of eicosanoids during plague has not been previously investigated. Using an intranasal mouse model infection, I determined the kinetics of eicosanoid synthesis during pneumonic plague. I further demonstrated that LTB_{4 …}

Porphyromonas Gingivalis Inactivates Anti-Viral Immunity At The Oral And Respiratory Epithelium., Carlos J. Rodriguez Hernandez

Electronic Theses and Dissertations

The host microbiome plays an important role in fine-tuning host immune responses in a manner that ultimately impacts outcomes in viral infection. Symbiotic relationships between commensal bacteria and host epithelial and immune cells prime interferon (IFN) signaling, modulating the nature and intensity of the immune response to viral infections at mucosal barrier surfaces. In this doctoral thesis, I explore how dysbiotic shifts in the oral microbial communities modulate antiviral responses at the oral and oro-respiratory mucosal barriers. I identified that in response to a viral challenge, gingival epithelial cells (GECs) preferentially induced type III IFNs (IFN-λ), a newly described family …

Investigation Of Avaren-Fc's Therapeutic Potential Against Ovarian Cancer., Katarina Lee Mayer

Electronic Theses and Dissertations

This thesis describes the investigation of Avaren-Fc (AvFc), a novel lectin-based therapeutic fusion protein consisting of the recombinant Avaren lectin and the Fc region of human IgG1, against ovarian cancer. AvFc possesses selectivity toward tumor associated N-linked high-mannose-type glycans. The present study demonstrates AvFc’s in vitro activity against OVCA cell lines via antibody-dependent cell-mediated cytotoxicity and its ability to extend the survival of mice challenged with murine ID8 OVCA cells after repeated systemic administration. Furthermore, AvFc treatment in this model was found to increase the presence of peritoneal leukocytes, suggesting a shift toward an improved antitumor immune response. Another key …

Do American Bison Practice Democracy? Group Consensus Decision Making Drives Bison Herd Movements And Cohesion., Matthew Sapien

Electronic Theses and Dissertations

The American bison is an iconic mammal that lives in large social herds and is considered a threatened species. Little is known about how bison make decisions as a group, whether through despotic individuals or group consensus. In this dissertation, I researched the mechanisms bison use to make herd movement decisions in 3 herds in the United States. In chapter one I examined the number of bison that participated in voting events for herd movement decisions and whether the final movement decision matched the direction with the most votes. Bison herd movements did match the direction with the most adult …

Multithreaded Applications On The Heterogeneous Research Computing Environment., Sungbo Jung

Electronic Theses and Dissertations

Bioinformatics is a domain that has experienced rapid research growth in recent years, as evidenced by the increasing number of articles in biomedical databases such as PubMed, which adds over a million publications every year. However, this also poses a challenge for researchers who need to find relevant citations for their work. Therefore, developing efficient indexing and searching methods for text data is crucial for Bioinformatics. One key technique for information retrieval is document inversion, which involves creating an inverted index to enable efficient searching through vast collections of text or documents. This Ph.D. research aims to design the research …

Impact Of Sustained Calorie Restriction And Weight Cycling On Body Composition In High-Fat Diet-Fed Male And Female C57bl/6j Mice, Daniel L Smith, Yongbin Yang, Luis M Mestre, Beate Henschel, Erik Parker, Stephanie Dickinson, Amit Patki, David B Allison, Tim R Nagy

Children’s Nutrition Research Center Staff Publications

Objective: The objective of this study was to investigate body composition changes with weight cycling (WC) among adult C57BL/6J mice with diet-induced obesity.

Methods: A total of 555 single-housed mice were fed a high-fat diet ad libitum (AL) from 8 to 43 weeks of age. The 200 heaviest mice of each sex were randomized to the following four groups: ever obese (EO, continued AL feeding); obese weight loser (OWL, calorie-restricted); obese weight loser moderate (OWLM, body weight halfway between EO and OWL); and WC (diet restricted to OWL followed by AL refeeding cycles). Body weight and composition data were collected. …

Prevalence Of Distal Symmetrical Polyneuropathy By Diabetes Prevention Program Treatment Group, Diabetes Status, Duration Of Diabetes, And Cumulative Glycemic Exposure, Christine G Lee, Adam Ciarleglio, Sharon L Edelstein, Jill P Crandall, Dana Dabelea, Ronald B Goldberg, Steven E Kahn, William C Knowler, Maxwell T Ma, Neil H White, William H Herman, Diabetes Prevention Program Research Group

Children’s Nutrition Research Center Staff Publications

Objective: To assess associations between distal symmetric polyneuropathy (DSPN) and Diabetes Prevention Program (DPP) treatment groups, diabetes status or duration, and cumulative glycemic exposure approximately 21 years after DPP randomization.

Research design and methods: In the DPP, 3,234 adults ≥25 years old at high risk for diabetes were randomized to an intensive lifestyle (ILS), metformin, or placebo intervention to prevent diabetes. After the DPP ended, 2,779 joined the Diabetes Prevention Program Outcomes Study (DPPOS). Open-label metformin was continued, placebo was discontinued, ILS was provided in the form of semiannual group-based classes, and all participants were offered quarterly lifestyle classes. Symptoms …

Identifying The Roles Of Mir-17 In Ciliogenesis And Cell Cycle, Ashwaq Alanazi

Pharmaceutical Sciences (PhD) Dissertations

Emerging evidence suggests a significant contribution of primary cilia to cell division and proliferation mechanisms. MicroRNAs, especially miR-17, contribute to cell cycle regulation and proliferation. Recent investigations have highlighted the dysregulated expression of miR-17 in various malignancies, underlining its potential role in cancer. However, the correlation between primary cilia and miR-17 has yet to be fully elucidated. The present study examines the presence of miR-17 in primary cilia. The miR-17 expression is studied in selected ciliary protein knockdown cells. Using in-situ hybridization (ISH), we identified the subcellular localization of miR-17 in both cilia and cell bodies. We confirmed the importance …

Use Of A Novel Combination Of Multiplex Pcr And Dna Barcoding In Assessing Authenticity Of Ginseng Products, Diane Kim

Food Science (MS) Theses

Ginseng (Panax sp.) is a medicinal plant root used for its purported health benefits, primarily in East Asian countries. The COVID-19 pandemic led to a significant increase in sales of dietary supplements, including ginseng supplements, to purportedly support immune health and provide other health benefits. However, this heightened demand has subsequently increased the risk of adulteration in these dietary supplements. The objective of this study was to determine the efficacy of a novel combination of DNA barcoding and multiplex PCR to identify species in ginseng supplements. A total of 50 commercial ginseng supplements containing either Panax ginseng, Panax quinquefolius, or …

Optimization Of Pre-Enrichment And Screening Methods For The Detection Of Salmonella Enterica In Meat Analog Products, Kylie Sacapano

Food Science (MS) Theses

With the growing demand and variety of meat analogs on the commercial market, there is a need to revisit the methodology for the detection of foodborne pathogens in these products. The current Food and Drug Administration (FDA) regulatory methods for Salmonella enterica detection in meat analogs follow the Bacteriological Analytical Manual (BAM) and are time-consuming and costly, requiring pre-enrichment using lactose broth (LB) with a surfactant (e.g., Triton X-100). Therefore, this study aimed to optimize pre-enrichment and screening methods for the detection of Salmonella in meat analogs by comparing the current FDA reference methods to updated techniques. To achieve this, …

Chlorogenic And Caffeic Acids’ Impact On Formation Of Fluorescent And Non-Fluorescent Advanced Glycation End-Products As A Function Of Temperature, Christianne Yapor

Food Science (MS) Theses

The glycation of amino acids with carbonyl groups of reducing sugars produces advanced glycation end-products (AGEs). These AGEs can be harmful to health over time. The research objective was to compare the effects of 0-1.00 mM chlorogenic acid (CGA) and caffeic acid (CA) on AGEs formed in glucose-lysine solutions at 25 °C, 63 °C and 100 °C for 30 and 60 minutes by measuring fluorescent AGEs: vesperlysine A and B, vesperlysine C, and total AGEs, and non- fluorescent carboxymethyl-lysine (CML) and carboxyethyl-lysine (CEL) with LC-MS. Chlorogenic acid inhibited the formation of AGEs to a greater extent compared to CA at …

A Meta-Analysis Of Seafood Species Mislabeling Rates In The United States, Sarah Ahles

Food Science (MS) Theses

Seafood is vulnerable to species mislabeling due to factors such as complex global supply chains, varying prices, and similar appearance of species. Numerous studies have been published reporting a range of mislabeling rates for various forms of seafood. However, these studies oftentimes focus on lesser-consumed species that are vulnerable to species mislabeling. As a result, the overall mislabeling rate of commercially sold seafood in the U.S. remains unknown, especially for the most consumed species. Thus, the objective of the current study was to compile the results of seafood mislabeling studies into a single resource to provide informative statistics on U.S. …

Spatiotemporal Gait Parameter Consistency Across Two Days Of Treadmill Walking In Stroke Survivors, Alejandro Aguirre Ramirez, Samantha N. Jeffcoat, Natalia Sanchez, Andrian Kuch

Student Scholar Symposium Abstracts and Posters

Retraining impaired gait is essential in post-stroke recovery. This project aims to determine between day variability of spatiotemporal gait measures in treadmill walking post-stroke to differentiate between changes due to the intervention and measurement errors due to between day test-retest variability. Six individuals post-stroke performed a two-minute walk test at a self-selected speed (SSS) for two consecutive days. SSS was assessed through the six-minute walk test. Reflective markers were placed on anatomical landmarks (van den Bogert et al. 2013). The heel markers were used for step detection. We calculated spatiotemporal parameters: stride length, stride time, step length, stance time, and …

The Combined Effects Of Nacl And Beet Juice On Germination And Early Seedling Growth Among Raphanus Sativus L., Justin Howell

Theses, Dissertations and Culminating Projects

Salt pollution and soil salinization via secondary pathways is a global problem. One practice which contributes to increased salinity in soils and other natural systems is the application of road deicers in colder regions. Increased salinity in soils negatively affects plant growth and microbial activity. In an effort to decrease the amount of salt applied to roads, salts are applied as brine. Liquid organic additives are incorporated into these brines to foster better adherence of the salt to impermeable surfaces. One common additive is beet juice, a byproduct of sugar extraction. Beet juice contains high levels of phosphorus and organic …

Synergistic Interactions And Emulsion Preparation Of Antioxidant Potential Of Cannabidiol And Cold Brew Coffee, Karina Rosa

Theses, Dissertations and Culminating Projects

Antioxidants play an important role in mitigating the damage caused by oxidative stress in the human body. Over time, the oxidative stress can lead to diseases such cardiovascular disease, neurodegenerative disorders and even cancer. Notably, both cannabidiol and coffee antioxidants. Purpose: To investigate the interaction between the antioxidant potential observed from the combination of CBD and cold brew coffee and compare it to their individual effects. Additionally, develop a methodology for emulsion preparation for analysis of antioxidant potential of a beverage made of cold brew coffee infused with CBD. Materials and Methods: Two cold brew coffee and two CBD oil …

Investigating The Role Of Residue E57 And Temperature Effects In Mycobacterium Tuberculosis Indole-3-Glycerol Phosphate Synthase Catalysis, Uchenna Emmanuel Ezichi

Theses, Dissertations and Culminating Projects

Tuberculosis (TB) remains a leading cause of adult mortality globally, with increasing drug resistance posing a significant challenge. Mycobacterium tuberculosis (Mt) is the causative agent, and understanding its enzymatic processes is crucial for drug development. One potential target is the enzyme Indole-3-glycerol phosphate synthase (IGPS), which plays a role in the tryptophan biosynthesis pathway and catalyzes the conversion of 1-(o-carboxyphenylamino)-1-deoxyribulose5’-phosphate (CdRP) into indole-3-glycerol phosphate (IGP). Investigating MtIGPS active site residues, particularly E57 and E219, through single- and double-point mutations revealed insights into their roles. Previous results of steady-state kinetics of the single-point mutations of E57D, E57Q, E219D, and E219Q indicated …

The Accuracy Of Videos Related To Breastfeeding On Tiktok: A Content Analysis, Brianna Jack

Theses, Dissertations and Culminating Projects

Breastfeeding is widely recognized as the best nutrition for infants, yet its rates remain below recommended levels due to various factors. One such factor is the dissemination of misleading information, often from online sources like social media. This study investigates the accuracy of information in TikTok videos related to breastfeeding and whether differences exist between the accuracy of videos and narrator identification, skin color, and gender. This study also aims to investigate the relationship between the accuracy and popularity of videos based on the number of views, likes, comments, and shares. A content analysis was used to code the most …

Spatiotemporal Patterns In Diadema Antillarum Settlement In The Florida Keys: Implications For Habitat Restoration, Julia Skowronski

Theses, Dissertations and Culminating Projects

The long-spined sea urchin (Diadema antillarum) is a keystone herbivore in the Caribbean and western Atlantic Ocean. It is found in various marine habitats including coral reefs and seagrass beds. On coral reefs, D. antillarum is part of a grazer assemblage that consumes fast-growing macroalgae and reduces competition with reef-building corals. In 1983–84 and again in 2022, D. antillarum experienced mass mortality, and presently populations have not recovered to their pre-1983 levels. Slow population growth is likely due to limited recruitment success under high post-settlement morality caused by a lack of suitable habitat. Here, patterns in larval settlement were examined …

Analysis Of Social Behavior Of The African Great Apes During Feeding And Non-Feeding Contexts, Jessica Hale

Master's Theses

The three African great apes, bonobos, chimpanzees and gorillas, despite similar habitats, differ considerably in their sociality and feeding ecology. There have been many studies that have investigated the feeding ecology and social behaviors of these species, but there is extremely limited literature available on how feeding ecology may have affected ape social evolution. Chimpanzees are frugivorous, which forces them into close proximity when foraging given the clumped nature of this resource. Bonobos and gorillas, however, are fallback food consumers, which allow them to spread out as they forage. This thesis project aims to test the hypothesis that differences in …

Gaseous Ozone To Improve The Microbial Safety Of Spices, Seeds, And Nuts, Arshpreet Kaur Khattra

Graduate Theses and Dissertations

Due to the increasing number of reported outbreaks of pathogens in low-moisture foods (LMFs), there is a need to investigate novel non-thermal gaseous technologies to increase the microbiological safety of spices, nuts, and seeds without compromising the product quality. The objective of this study was to inactivate Salmonella spp. in different spices, seeds, and nuts using gaseous ozone treatment and evaluate the suitability of Enterococcus faecium as a potential surrogate for Salmonella. Each food product (dried basil leaves, black peppercorn, chia seeds, and walnuts) was separately inoculated with a 5-strain Salmonella and E. faecium cocktail and equilibrated to water activity …

Determination Of Ileal Digestible Phosphorous Values In Various Inorganic Sources Meat And Bone Meal Sources, Jay Hampton

Graduate Theses and Dissertations

Concerns around the economic and environmental consequences of suboptimal or excess dietary P levels in broiler diets has led to increased interest in determining ileal P digestibility values for feed ingredients. Therefore, two experiments (EXP) were conducted to determine the apparent (AID) and standardized ileal digestibility (SID) of P in various inorganic phosphates and meat and bone meals (MBM) using the direct method. In both EXP 1 and 2, ileal samples were collected at 22 d post-hatch from birds fed semi-purified diets based on dextrose and corn starch containing test ingredients and one N and P free (NPF) diet for …

The Effects Of Instructed Task Prioritization On Dual-Task Cost In Older Adults, Megan D. Jones

Graduate Theses and Dissertations

Concurrently performing motor and cognitive tasks, also known as dual-tasking (DT), is a daily activity being shown to produce decrements in gait and cognitive performance in older adults (OA) (Bootsma-van der Wiel et al., 2003; CDC, 2023; Kenny et al., 2017). Determining if OAs can cognitively flex attention allocation between motor and cognitive tasks during DT activities offers insight into how to educate older adults on improving activities of daily life (Della Sala et al., 1995; Mac-Auliffe et al., 2021; Montero-Odasso et al., 2012). Purpose: To evaluate changes in DTC in older adults during DT walking with instructed task prioritization …

The Causes And Consequences Of Behavioral Plasticity In Anti-Predatory Defense And Mate Choice In Tropical Butterflies, Sushant Potdar

Graduate Theses and Dissertations

Behavioral plasticity, where individuals change their behaviors in response to varying environmental and social conditions, affects major evolutionary trajectories. But how individuals change these behaviors under certain social situations, and what the genetic causes and consequences of such behavioral changes are in response to social environments are yet to be fully understood. I address these questions in the context of anti-predatory behaviors (chapter 1), and mate choice (chapters 2, 3, 4) in tropical butterflies. In the context of anti-predatory behaviors, I found predator-specific behavioral changes in toxic Heliconius butterflies, suggesting variance in predation pressures and butterfly recognition of bird calls. …

Evaluation Of The Effect Of A Commercial Lippia Origanoides Essential Oil Extract On Salmonella Serovar Enteritidis As A Natural Alternative To Antibiotics In The Poultry Industry, Abdiel Atencio

Graduate Theses and Dissertations

The purpose of the present research was to evaluate the bactericidal activity of a microencapsulated Lippia origanoides essential oils (LOEOs) against Salmonella Enteritidis (SE) in an in vitro crop assay and in a prophylactic broiler chicken model using three low doses of the product: 75 ppm, 150 ppm and 300 ppm. Two trials of each assay were conducted. Day-of-hatch male Cobb-Vantress broiler chickens were randomly allotted to one of four groups: 1) positive control group; 2) 75 ppm LOEOs group; 3) 150 ppm LOEOs group; 4) 300 LOEOs group. Chicks were fed and watered ad libitum in heated brooder batteries …

Competition And Criticality In Cortical Neural Circuits Underlie Behavior And Optimize Working Memory, Jacob Harrison Barfield

Graduate Theses and Dissertations

One of the primary goals of neuroscience is to explain how brain function emerges from dynamic interactions among large populations of neurons. A long-standing hypothesis at the interface of physics and neuroscience posits that neural circuits may operate close to the critical point of a phase transition. In this dissertation, we will investigate a new form of criticality and the implications that it has in working memory and the generation of voluntary body movements. We will utilize this new form of criticality to investigate the functional benefits that can be harnessed by operating near the critical point when performing working …

Heterogenous Impacts Of Pathogenic Avian Diseases On Global Poultry Production, Elsbeth Hamilton

Graduate Theses and Dissertations

Globally, poultry is one of the most versatile and cost-effective sources of animal-based protein. Due to its wide variety of uses and variability of growing styles, poultry production is applicable in nearly every country. With the increase of scale and concentration of production, pathogenic diseases have decreased the efficiency of production through worsened feed conversion, morbidity, and mortality. In addition to physiological health, climate largely impacts the suitable conditions for growing. With more extreme climate events, locations once ideal for poultry are less efficient due to increased resource cost. This analysis seeks to determine the heterogeneity of production and the …

An Investigation Of Information Structures In Dna, Joel Mohrmann

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

The information-containing nature of the DNA molecule has been long known and observed. One technique for quantifying the relationships existing within the information contained in DNA sequences is an entity from information theory known as the average mutual information (AMI) profile. This investigation sought to use principally the AMI profile along with a few other metrics to explore the structure of the information contained in DNA sequences.

Treating DNA sequences as an information source, several computational methods were employed to model their information structure. Maximum likelihood and maximum a posteriori estimators were used to predict missing bases in DNA sequences. …

Vibmilk: Non-Intrusive Milk Spoilage Detection Via Smartphone Vibration, Yuezhong Wu, Wei Song, Yanxiang Wang, Dong Ma, Weitao Xu, Mahbub Hassan, Wen Hu

Research Collection School Of Computing and Information Systems

Quantifying the chemical process of milk spoilage is challenging due to the need for bulky, expensive equipment that is not user-friendly for milk producers or customers. This lack of a convenient and accurate milk spoilage detection system can cause two significant issues. First, people who consume spoiled milk may experience serious health problems. Secondly, milk manufacturers typically provide a “best before” date to indicate freshness, but this date only shows the highest quality of the milk, not the last day it can be safely consumed, leading to significant milk waste. A practical and efficient solution to this problem is proposed …

Broadening The Application Range Of Cell-Free Protein Expression Systems, Matthew Becker

All Theses

Centralized protein manufacturing platforms make the delivery of needed therapies to places with limited infrastructure almost impossible. Cell-free protein expression systems, systems that utilize protein production machinery extracted from cells, offer these communities a viable protein expression platform that is robust and easily deliverable to the place of need. Much work in cell-free system engineering looks to increase the hardiness of cell-free system (CFS) components, like the extract and reaction buffer, needed to carry transcription and translation of gene therapeutic targets forward. Freeze- and air-drying of extract, reaction buffer, or both with certain additives, like sugar molecules, has been proposed …