Life Sciences Commons^™

Integrated Transcriptomics And Proteomics Study Of Starvation Selected Drosophila Melanogaster, Aavash Adhikari

UNLV Theses, Dissertations, Professional Papers, and Capstones

Drosophila melanogaster, selected for starvation resistance exhibits phenotypic traits such as increased body size, slower development, reduced fecundity and obesity like characteristics including higher lipid reserves and cardiac dysfunction. While prior studies have explored the metabolic and biochemical changes in these flies, the underlying genetic and molecular mechanisms remain unclear. This study aims to investigate the gene expression and protein abundance in starvation-selected Drosophila through RNAseq, proteomics, and integrating both datasets using the MixOmics package in R. I found differential gene expression in the fat body at the third instar larval stage, particularly in pathways related to lipid metabolism, calcium …

Understanding Failure Mechanisms For Two Colorectal Anastomosis Techniques, Youssef Sherif Sadek Fahmy

UNLV Theses, Dissertations, Professional Papers, and Capstones

Colorectal Surgery continues to be one of the most common gastrointestinal surgeries performed in the US. A common complication known as Anastomotic Leakage (AL) that threatens up to 30% of patients with this surgery. Many cases of AL can decrease the quality of life for patients or extensively extend hospital stays, and in many cases, lead to death. Researchers have studied this complication in clinical trials, yet few studied the mechanics of stapled anastomosis in controlled environments. The purpose of this research was to understand the mechanical interaction between the staples and the tissue, and to eventually apply it in …

Physiology And Genomics At The Bottom Of The World: Genome To Phenome, Amy Christine Klink

UNLV Theses, Dissertations, Professional Papers, and Capstones

Mammals are exposed to a suite of physiological challenges based on the environment in which they inhabit. Animal individuals can overcome challenges associated with the dynamic nature of their habitat through variation in phenotypic traits. The plasticity of a phenotype relies on an individual’s genome and the transcription factors that act on regulatory elements. Species living in Antarctica display physiological specializations to withstand harsh conditions, such as severe cold temperatures, shifts in available ice habitat, and annual fluctuations in daylight. To explore the connections between an individual’s genome and its phenotype, we investigated two physiologies of the Antarctic Weddell seal …

Closing The Crop Yield Gap Between Organic And Conventional Farming Systems In Kenya: Long-Term Trial Research Indicates Agronomic Viability, David Bautze, Edward Karanja, Martha Musyoka, Johanna Rüegg, Eva Goldmann, Milka Kiboi, Ivonne Kampermann, Marc Cotter, Amritbir Riar, Felix Matheri, Edwin Mwangi, Monicah Mucheru-Muna, Hottensiah Wambui, John J. Anyango, Samuel Ndung'u, Chrysantus Tanga, Komi K.M. Fiaboe, Jesca Mbaka, Anne Muriuki, David Kamau, Noah Adamtey

All Peer-Reviewed Publications

The production gap between current and attainable yields is highest on Africa's smallholder farms, and some studies indicate that they might not benefit from the yield gains offered by conventional farming. Simultaneously, alternative farming systems like organic provide biodiversity and soil fertility advantages, but their ability to produce sufficient food is still under debate. Additionally, comparative data on the productivity of organic versus conventional in tropical regions are scarce or short-term. We investigated the crop productivity of organic and conventional farming systems using 15 years in two long-term systems comparison trials in Kenya. The trials were established in 2007 at …

Insights Into Malaria Vectors–Plant Interaction In A Dryland Ecosystem, Fiona Kinya, Trizah K. Milugo, Clifford M. Mutero, Charles S. Wondji, Baldwyn Torto, David P. Tchouassi

All Peer-Reviewed Publications

Improved understanding of mosquito–plant feeding interactions can reveal insights into the ecological dynamics of pathogen transmission. In wild malaria vectors Anopheles gambiae s.l. and An. funestus group surveyed in selected dryland ecosystems of Kenya, we found a low level of plant feeding (2.8%) using biochemical cold anthrone test but uncovered 14-fold (41%) higher rate via DNA barcoding targeting the chloroplast rbcL gene. Plasmodium falciparum positivity was associated with either reduced or increased total sugar levels and varied by mosquito species. Gut analysis revealed the mosquitoes to frequently feed on acacia plants (~ 89%) (mainly Vachellia tortilis) in the family Fabaceae. …

Biological Reinforcement Learning Simulation For Natural Enemy -Host Behavior: Exploring Deep Learning Algorithms For Population Dynamics, Komi Mensah Agboka, Emmanuel Peter, Erion Bwambale, Bonoukpoè Mawuko Sokame

All Peer-Reviewed Publications

This study introduces a simulation of biological reinforcement learning to explore the behavior of natural enemies in the presence of host pests, aiming to analyze the population dynamics between natural enemies and insect pests within an ecological context. The simulation leverages on Q-learning, a reinforcement learning algorithm, to model the decision-making processes of both parasitoids/predators and pests, thereby assessing the impact of varying parasitism and predation rates on pest population growth. Simulation parameters, such as episode count, duration in months, steps, learning rate, and discount factor, were set arbitrarily. Environmental and reward matrices, representing climatic conditions, crop availability, and the …

Biostimulant And Antagonistic Potential Of Endophytic Fungi Against Fusarium Wilt Pathogen Of Tomato Fusarium Oxysporum F. Sp. Lycopersici, Marie Cecile Muhorakeye, Everlyne Samita Namikoye, Fathiya M. Khamis, Waceke Wanjohi, Komivi S. Akutse

All Peer-Reviewed Publications

Endophytic fungal-based biopesticides are sustainable and ecologically-friendly biocontrol agents of several pests and diseases. However, their potential in managing tomato fusarium wilt disease (FWD) remains unexploited. This study therefore evaluated effectiveness of nine fungal isolates against tomato fusarium wilt pathogen, Fusarium oxysporum f. sp. lycopersici (FOL) in vitro using dual culture and co-culture assays. The efficacy of three potent endophytes that inhibited the pathogen in vitro was assessed against FWD incidence, severity, and ability to enhance growth and yield of tomatoes in planta. The ability of endophytically-colonized tomato (Solanum lycopersicum L.) plants to systemically defend themselves upon exposure to FOL …

Biochemistry And Transcriptomic Analyses Of Phthorimaeaabsoluta (Lepidoptera: Gelechiidae) Response To Insecticides, Samantha W. Karanu, Inusa J. Ajene, Elijah K. Lelmen, Maureen A. Ong’Onge, Komivi S. Akutse, Fathiya M. Khamis

All Peer-Reviewed Publications

Phthorimaeaabsoluta is an invasive solanaceous plant pest with highly devastating effects on tomato plant. Heavy reliance on insecticide use to tackle the pest has been linked to insecticide resistance selection in P.absoluta populations. To underline insights on P.absoluta insecticide resistance mechanisms to diamides and avermectins, we evaluated the transcriptomic profile of parental (field-collected) and F8 (lab-reared) populations. Furthermore, to screen for the presence of organophosphate and pyrethroid resistance, we assessed the gene expression levels of acetylcholinesterase (ace1) and para-type voltage-gated sodium channel (VGSG) genes in the F1 to F8 lab-reared progeny of diamide and avermectin exposed P.absoluta field-collected populations. The …

The Global Atlas Of Edible Insects: Analysis Of Diversity And Commonality Contributing To Food Systems And Sustainability, Evanson R. Omuse, Henri E.Z. Tonnang, Abdullahi Ahmed Yusuf, Honest Machekano, James Peter Egonyu, Emily Kimathi, Samira Faris Mohamed, Menale Kassie, Sevgan Subramanian, Juliet Onditi, Serah Mwangi, Sunday Ekesi, Saliou Niassy

All Peer-Reviewed Publications

The future of the food system on the planet is increasingly facing uncertainties that are attributable to population growth and a surge in demand for nutritious food. Traditional agricultural practices are poised to place strain on production, as well as natural resources and ecosystem services provided, particularly under a changing climate. Given their remarkable attributes, including a low environmental footprint, high food conversion ratio, rapid growth and nutritional values, edible insects can play a vital role in the global food system. Nonetheless, substantial knowledge gaps persist regarding their diversity, global distribution, and shared characteristics across regions, potentially impeding effective scaling …

Community Perceptions, Acceptability, And The Durability Of House Screening Interventions Against Exposure To Malaria Vectors In Nyimba District, Zambia, Kochelani Saili, Christiaan De Jager, Freddie Masaninga, Brian Chisanga, Andy Sinyolo, Japhet Chiwaula, Jacob Chirwa, Busiku Hamainza, Emmanuel Chanda, Nathan N. Bakyaita, Clifford Maina Mutero

All Peer-Reviewed Publications

Background: House screening remains conspicuously absent in national malaria programs despite its recognition by the World Health Organization as a supplementary malaria vector-control intervention. This may be attributed, in part, to the knowledge gap in screen durability or longevity in local climatic conditions and community acceptance under specific cultural practices and socio-economic contexts. The objectives of this study were to assess the durability of window and door wire mesh screens a year after full house screening and to assess the acceptability of the house screening intervention to the participants involved. Methods: This study was conducted in Nyimba district, Zambia and …

Quantifying Temperature Effects On Development Rate And Plant Quality Of Compact Container-Grown Tomato, Morgan Humphrey, Ryan W. Dickson, Sonali Padhye

Horticulture Faculty Publications and Presentations

Mean daily temperature effects on plant development rates and quality were evaluated for compact container-grown tomato (Solanum lycopersicum). Compact tomato varieties ‘Siam’ and ‘Red Velvet’ were grown in greenhouses at 18 to 26 °C (Expt. 1) and 20 to 30 °C (Expt. 2) under supplemental high-pressure sodium lighting and 16-h photoperiod. The number of days to first open flower, first ripe fruit and from flower to ripe fruit were measured and development rates calculated by taking the reciprocal (e.g., 1/d). Temperature effects were predicted by fitting a linear (for first open flower) and a nonlinear exponential function (for …

Genetic Diversity And Population Structure Of Tomato (Solanum Lycopersicum) From The Usda-Grin Germplasm Collection, Ibtisam Alatawi, Haizheng Xiong, Hanan Alkabkabi, Kenani Chiwina, Qing Luo, Kai-Shu Ling, Yuejun Qu, Renjie Du, Ainong Shi

Horticulture Faculty Publications and Presentations

The genetic diversity and population structure of tomato (Solanum lycopersicum) were investigated to support breeding strategies and germplasm conservation. A total of 276 accessions from the USDA-GRIN collection were analyzed using single-nucleotide polymorphisms (SNPs) generated through genotyping by sequencing (GBS). After stringent filtering, 5162 high-quality polymorphic SNPs were retained for analysis. Population structure analysis revealed three distinct genetic groups (Q1, Q2, and Q3) among the accessions. Accessions from the USA, Asia, and Central and South America were assigned to all three groups, while accessions from Europe and Oceania were predominantly clustered within Q2. Genetic diversity indices, including major …

Morphological Changes Of Liver Among Post-Fontan Surgery Patients, Varatharajan Nainamalai, Håvard Bjørke Jenssen, Khadiza Tun Suha, Mostafa Rezaeitaleshmahalleh, Min Wang, Sarah Khan, Marcus Haw, Jingfeng Jiang, Joseph Vettukattil

Michigan Tech Publications

Purpose: Liver screening and longitudinal study of Fontan Associated Liver Diseases (FALD) is essential to identifying hepatomegaly and how hepatomegaly relates to various stages of liver fibrosis. In this study, we investigated longitudinal liver shape changes and liver stiffness in a cohort of patients with Fontan Associated Liver Disease. Methods: We used 170 image volumes of 40 Fontan stage 3 completion patients. We also used 65 computed tomography images of healthy individuals from three datasets for comparison. Thirteen radiomic shape features of Fontan patients and individuals with a healthy liver were extracted and analyzed longitudinally. We studied correlations among features, …

Diversity Of Gibberellin 2-Oxidase Genes In The Barley Genome Offers Opportunities For Genetic Improvement, Jingye Cheng, Yong Jia, Camilla Hill, Tianhua He, Ke Wang, Ganggang Guo, Sergey Shabala, Meixue Zhou, Yong Han, Chengdao Li

Grain and Other Field Crops Research Articles

Introduction

Gibberellin (GA) is a vital phytohormone in regulating plant growth and development. During the “Green Revolution”, modification of GA-related genes created semi-dwarfing phenotype in cereal crops but adversely affected grain weight. Gibberellin 2-oxidases (GA2oxs) in barley act as key catabolic enzymes in deactivating GA, but their functions are still less known.

Objectives

This study investigates the physiological function of two HvGA2oxgenes in barley and identifies novel semi-dwarf alleles with minimum impacts on other agronomic traits.

Methods

Virus-induced gene silencing and CRISPR/Cas9 technology were used to manipulate gene expression of HvGA2ox9 and HvGA2ox8ain barley and RNA-seq …

Investigation Of Magnesium-Potassium Phosphates As Potential Nuclear Waste Form For The Immobilization Of Minor Actinides, Hans Conrad Zur Loye, Petr Vecernik, Monika Kiselova, Vlastislav Kašpar, Hana Korenkova, Vlastimil Miller, Petr Bezdicka, Jan Šubrt, Natalija Murafa, Volodymyr Shkuropatenko, Sergey Sayenko

Faculty Publications

Several recent studies have evaluated technologies of spent nuclear fuel processing specifically for solidifying transuranic (TRU) waste as a by-product of fission. Of the TRU group, plutonium and the minor actinides will be responsible for the bulk of the radiotoxicity and heat generation of spent nuclear fuel in the long term (300 to 20,000 years). In this study, we investigated magnesium potassium phosphate (MKP)-based compounds as host waste forms for the encapsulation of inactive trivalent Nd and Sm as analogues of the minor trivalent actinides, Am and Cm. Waste forms were fabricated under ambient atmospheric conditions by adding 5 wt.% …

Ecological And Pathological Applications Of The Heat Shock Response, Taylor Rae Stanley

Theses and Dissertations

The heat shock response (HSR) is a cytoprotective stress response pathway that regulates cellular proteostasis. The HSR is an evolutionarily conserved pathway that is essential for normal cellular functioning. Here, we explore the broad ecological and pathological impacts of the HSR. In an ecological context, we perform gene level analysis of the transcriptomes of two closely related sunfish. We found that the more invasive bluegill sunfish has gene expansions in two HSR gene families, the HSP70 family and the HSP90 family compared to the redear sunfish. These gene expansions were also observed in several other teleost fish species and were …

Dissecting Metabolic Landscape Of Alveolar Macrophage, Sunayana Malla

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

The highly plastic nature of alveolar macrophage (AM) plays a crucial role in the defense against inhaled particulates and pathogens in the lungs. Depending on the signal, AM acquires either the classically activated M1 phenotype or the alternatively activated M2 phenotype. In this study, we investigate the metabolic shift in the activated phases of AM (M1 and M2 phases) by reconstructing context specific genome-scale metabolic (GSM) models. Metabolic pathways such as pyruvate metabolism, arachidonic acid metabolism, chondroitin/heparan sulfate biosynthesis, and heparan sulfate degradation are found to be important driving forces in the development of the M1/M2 phenotypes. Additionally, we formulated …

Microbiome Variation In Production Phenotypes And The Role Of Colonization History In Microbiome Establishment, Seidu Adams

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Ruminant-based agriculture is expected to continue to be a major contributor to food security to feed the growing population. At the heart of nutrient degradation of complex organic matter within the rumen are its microbes. These microbes can convert otherwise unusable organic matter into usable protein and energy and can provide up to 50% of the animal’s protein needs and up to 70% of the energy needs. The microbial functional capacity within the rumen determines the nutrients utilized and the end products of fermentation. However, our understanding of microbial functional capacity within the rumen and factors that influence the rumen …

Increasing The Impact Of Dietary Fiber From Grains On Human Health Through Gut Microbiome, Sujun Liu

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

The relationship between dietary fiber intake and human health has gained significant attention due to its potential in preventing chronic diseases and promoting gut health. Grains are a primary source of dietary fiber; however, the health impact of grain fibers is often limited because they are incompletely metabolized by gut bacteria. This dissertation explores innovative strategies to enhance the concentration and of dietary fiber from grains and its utilization by gut bacteria. By investigating various treatments, this research aims to maximize the health benefits of grain-derived dietary fibers, thereby contributing to a healthier society.

This dissertation is organized into four …

The Nebraska Bird Review (December 2024) 92(4), Whole Issue

Nebraska Bird Review

Fall Field Report, August–November 2024, by W. Ross Silcock

First Breeding Confirmation for Red-breasted Nuthatch (Sitta canadensis) along the Big Bend Reach of the Platte River, by Jacob C. Cooper, Cody McGregor, Letitia M. Reichart, and Janet Steele

McCook Fall Field Days, Sept. 20–22, 2024, by Gary Roberts

Index to Volume 92

Subscription and Organization Information

Defining The Peripheral Plasticity Of Nociceptive Afferents Following Spinal Cord Injury And Physical Therapy Intervention., Morgan Julianna Forston

Electronic Theses and Dissertations

The focus of this dissertation is to explore the peripheral plasticity of nociceptive afferents following spinal cord injury (SCI) and whether it is exacerbated or induced when physical therapy-based muscle stretching, a therapy we have shown to be detrimental to locomotor recovery in rodents, is implemented post-SCI. Chapter I provides a brief introduction on sensory afferents with particular emphasis on nociceptive afferents and their multifaceted role within the peripheral and central nervous systems. Chapter II describes SCI epidemiology and common sensory related complications that occur in patients as well and pharmaco- and physical therapies that are employed post-SCI. Chapter III …

Differential Responses Of Human Neutrophils To Legionella Species., Hannah E. Hanford

Electronic Theses and Dissertations

Legionella species are Gram-negative facultative intracellular bacterial pathogens commonly found in freshwater or soil environments where they survive and replicate within their natural protozoan hosts. Humans serve as an accidental host for Legionella species after inhalation of contaminated aerosolized water droplets or soil particles enabling the bacteria to enter the lungs, infect alveolar macrophages, and result in severe pneumonia. Evasion of degradation and proliferation within alveolar macrophages by Legionella species and manifestation of “Legionnaires’ disease” is dependent on the Dot/Icm type IV secretion system (T4SS). The T4SS apparatus is a needle-like channel for translocation of over ~350 effector proteins, depending …

The Effect Of Indaziflam On Seed Production In Perennial Cool-Season Grasses, Benson F. Israelsen

All Graduate Theses and Dissertations, Fall 2023 to Present

Annual invasive grass weeds are a major problem in grass seed production as they contaminate seed lots and decrease the quality. Few effective herbicides are available to control invasive grass weeds in seed production systems. Indaziflam is a pre-emergence herbicide capable of providing annual weed control for 3-5 years after application. Indaziflam is not labeled for use in seed production as little is known of the effect it will have. The purpose of this study was to measure total seed yield, seed germination, seed mass, and seedling vigor when applying 0, 40, 77, and 93 g ai ha^-1 of …

Responses Of Medical Cannabis To Daily Light Integrals Higher Than Summer Sunlight: Yield, Morphology, And Quality, James D. Nielson

All Graduate Theses and Dissertations, Fall 2023 to Present

Cannabis sativa L. is a crop with growing medical and commercial significance. However, cannabis is not as well studied or understood as many of the most common crops. A novel area of research surrounds how much light the plant can tolerate or use to keep increasing flower yield. In agriculture, light intensity is often measured by how many light particles interact with a given area in a second, referred to as photosynthetic photon flux density (PPFD). For example, at Utah State University in Logan, Utah, during the peak of summer, the sun's light intensity can reach about 2000 μmol·m^{-2 …}

Recent Advances In Transition Metal-Based Photocatalytic Heterojunctions For Algal Inhibition And Water Disinfection: A Review, Yaksha Verma, Gaurav Sharma, Jibran Iqbal, Mu Naushad, Chin Wei Lai, Amit Kumar, Pooja Dhiman, Ackmez Mudhoo

All Works

Sustainable energy production and effective water pollution control are critical global priorities. Harmful algal blooms (HABs) and waterborne pathogens pose significant threats to water quality and public health, necessitating efficient and eco-friendly treatment methods. Transition metal-based photocatalytic heterojunctions offer promising solutions by leveraging the unique properties of transition metals to enhance photocatalytic efficiency. This review examines recent advances in these heterojunctions employed for algal inhibition and water disinfection, discussing various heterojunction type (including conventional, p-n, Z-scheme, S-scheme, and Schottky heterojunctions), and their synthesis methods. We elucidate the mechanisms involved, highlighting improved electron transfer, reduced recombination rates, and broadened light absorption. …

Cognitive Bias, Memory, And Fearfulness Of Red Jungle Fowl And Athens Canadian Random Bred Chickens, Victor Juwon Oyeniran

Graduate Theses and Dissertations

Our understanding of how poultry perceive and interpret their environment is essential to enhancing their welfare; over the years, animal welfare science has relied on measures of the behavioral and physiological components of affective states (positive and negative) as welfare indicators. There is an increasing interest in the study of chicken’s affective states using the Judgment bias test (JBT) as a tool for assessing welfare through their responses to ambiguous cues. This study investigates the cognitive performance of two chicken breeds with different evolutionary histories: Red Junglefowl (RJF), the primary ancestor of modern chickens, and Athens Canadian Random Bred (ACRB), …

Frogs On A Plain: Spatial Ecology Of Crawfish Frogs In Arkansas’ Remnant Prairies, Elliot T. Lassiter

Graduate Theses and Dissertations

The prairie peninsula was an expansive and important habitat that covered much of midwestern North America, from Canada to Arkansas, USA. But the prairie peninsula has shrunk by as much as 99% since 1830, and therefore, land acquisition and public/private partnerships are critical for the preservation of prairies and their associated species. In Arkansas, one species that benefits from protected prairies is the Crawfish Frog (Lithobates areolatus), which is currently declining precipitously throughout its range. Adult Crawfish Frogs spend most of their lives in terrestrial refugia (crayfish burrows), making them highly vulnerable to habitat loss and fragmentation, thereby …

Influence Of Hydrologic And Anthropogenic Disturbance On Stream Populations And Communities, Sarah Frances Sorensen

Graduate Theses and Dissertations

Disturbances occur when an external force modifies a habitat, destroying living space, removing food resources, or altering or destroying habitat structure. In lotic systems, a primary source of disturbance is hydrologic disturbance, including drought and flood. Hydrologic disturbances lead to increased mortality rates and dispersal out of disturbed habitats, causing population sizes to decrease and changes to community structures. More research is needed on how disturbances impact stream species and communities, as disturbances are predicted to become more intense with climate change. This dissertation aims to understand how disturbance influences streams at both the population and community level, through a …

The Impact Of In Ovo Administration Of Probiotic Lactobacilli On The Gut Health And Immune Competence Of Broiler Chickens, Shreeya Sharma

All Theses

Due to the incomplete development of their immune system, newly hatched chicks are vulnerable to a wide range of pathogenic microorganisms, including enteric bacterial pathogens during the early stage of life. To boost their immune system during this critical period, numerous studies suggest early feeding, either in ovo or immediately post-hatch, of nutrients and immunomodulators such as prebiotics, probiotics, phytobiotics, Toll-like receptors (TLRs) ligands, vitamins and minerals. Probiotics, defined as live, non-pathogenic microorganisms that confer beneficial effects on the host, have been extensively studied for their effects on poultry health. Supplementation of probiotics to chickens has demonstrated a broad spectrum …

Predictive Model For Listeria Monocytogenes In Rte Meats Using Exclusive Food Matrix Data, N.A. Nanje Gowda, Manjari Singh, Gijs Lommerse, Saurabh Kumar, Eelco Heintz, Jeyamkondan Subbiah

Food Science Faculty Publications and Presentations

Post-processing contamination of Listeria monocytogenes has remained a major concern for the safety of ready-to-eat (RTE) meat products that are not reheated before consumption. Mathematical models are rapid and cost-effective tools to predict pathogen behavior, product shelf life, and safety. The objective of this study was to develop and validate a comprehensive model to predict the Listeria growth rate in RTE meat products as a function of temperature, pH, water activity, nitrite, acetic, lactic, and propionic acids. The Listeria growth data in RTE food matrices, including RTE beef, pork, and poultry products (731 data sets), were collected from the literature …