Life Sciences Commons^™

What’S The Beef? Current Trends Of The Florida Beef Cattle Industry As Perceived By Florida Beef Cattle Industry Leaders, Micah Gallagher, Matt Benge, Lauri Baker

Journal of Human Sciences and Extension

Agriculture plays a vital role in Florida’s economy, as it is the second largest industry behind tourism. Additionally, Florida is a leading cow-calf production state in the United States which is impacted by numerous factors internal and external to the industry itself. The Theory of Reasoned Action was used to explore current trends of the Florida beef cattle industry as perceived by Florida cattle industry leaders. Thirteen themes emerged from the data, such as environmental protection and alternative proteins. Florida ranchers need support from government entities to continue participation in conservation, education, and improvement of the cattle industry in Florida. …

Synthesis Of Novel Chromenone Esters For Biochemical Assays, Andrew Dean Helmerich

Undergraduate Honors Thesis Collection

This project details the synthesis of a variety of novel chromenone esters to be used as enzymatic probes. A robust, initial library of 22 chromenone esters was successfully synthesized with differences in chain length, branching, and the incorporation of cyclic and heteroatomic moieties. These new chromenones were fully characterized by 1HNMR, 13CNMR, DEPT HRMS, 19FNMR, and HSQC. The utility of these compounds comes from the fact that they will fluoresce upon cleavage of the ester; thus, this property makes them ideal candidates to be used in the monitoring of enzymatic activity of esterases. Elucidating the enzyme-substrate structure activity relationship (SAR) …

73 | ‘Akko Iii: The 1991–1998 Excavations: The Late Periods Part 2: The Knights’ Hotel Site, The Messika Plot And Miscellaneous Studies, Danny Syon, Ayelet Tatcher

IAA Reports—Monograph Series of the Israel Antiquities Authority

Akko III: The Late Periods comprises two parts (IAA Reports 72 and 73), the third and fourth volumes in a series publishing the results of four excavations that took place within and just outside of the Old City of ‘Akko between 1991 and 1998. These two volumes present the archaeological finds from the Early Islamic to Ottoman periods, concentrating on the architecture and small finds from the Crusader period.

The present volume (Part 2; IAA Reports 73) presents the excavations in the Knights’ Hotel Site, which yielded a wealth of small items of daily use, including glass finds, lead ampullae, …

Evaluating The Success Of A Relocated Mussel Community In The Lower Sulphur River, Texas, Rachel M. Leicher

Biology Theses

Conservation efforts to preserve freshwater mussel communities have become more common as these animals become increasingly threatened by their changing habitats. As humans continue to shape and change the world around them, aquatic species living in modified and disturbed water systems can be negatively impacted leading to decline of the ecosystem. During disturbance events involving a stream, river, or pond, the relocation of affected mussel beds is becoming more widespread. Although there are few of these studies, many of those that have been conducted are seen as successful in relocating and conserving their mussel communities. This study focuses on detection …

Condition And Management Futures In A Quaking Aspen Recreation Area. Final Report To Snyderville Basin Special Recreation District, Paul C. Rogers, Georgie Corkery, Anna B. Miller

Aspen Bibliography

In partnership with Snyderville Basin Special Recreation District (SBSRD), we undertook a study of ecological conditions and user preferences within a quaking aspen recreational destination forest. The location, in two sections know as Run-A-Muk and Right Turn Sage (RAM/RTS), has experienced some forest die-off in the principally aspen dominated forest dissected by ski, bike, and hiking trails. Graduate student Georgie Corkery led the study and successfully completed a Master's degree, in addition to providing needed information to SBSRD regarding the status, uses, and preferred actions at this facility. Key outcomes regarding aspen conditions include assigning causal factors—ungulate browsing and elevated …

Napa Valley Certified Organic Viticulture Napa Valley Vineyards Go Green: Transitioning To Organic Cultivation, Eric E. Tapia

Undergraduate Honors Theses

The shift to sustainable agriculture in Napa Valley necessitates certified organic vineyards among wine industry stakeholders to facilitate systemic change. Nonetheless, numerous impediments—such as fiscal constraints, inadequate access to information, and agricultural education—are intended to address these barriers for fostering an environmental stewardship program focused on innovation and sustainability. The methods employed to investigate the transition to organic vineyards include qualitative and quantitative approaches, such as interviews with vintners and data analysis of annual crop yields and the economic impact of certified organic vineyards in Napa Valley. The investigation reveals that vineyard proprietors face significant early challenges, including a steep …

High Yield Of Congenital Hypothyroidism Among Infants Attending Children Hospital, Nairobi, Kenya. Facility Based Study In The Absence Of Newborn Screening, Menbere Kahssay, Thomas Ngwiri

Paediatrics and Child Health, East Africa

Objectives: Congenital hypothyroidism (CHT) is a treatable cause of intellectual disability. Late diagnosis and delayed initiation of treatment leads to irreversible neurodevelopmental and intellectual disability. Thus, newborn screening is crucial. However, 71 % of babies are born in an area with no established newborn screening program and Kenya is not an exception. We aimed to determine the incidence of CHT, developmental outcomes of patients in the absence of newborn screening.

Methods: A retrospective data of subjects who met the inclusion criteria, newborn and infants from 3 days to 2 years whose thyroid function test (TFT) was undertaken during well baby …

Assessment Of Drought Tolerance In Mung Bean [Vigna Radiata (L.) Wilczek] Through Phenology, Growth, Protein Yield, And Cluster Heatmap Analysis, Rafiqul Islam, Jamil Hossain, Shamsul Huda, Mohammad Golam Azam, Faruk Hossain, Aktar Uz Zaman, Safiqul Moula, Nasir Uddin Ahmed, Jamal Hossain, Ayman El Sabagh, Mohammad Sohidul Islum

The Philippine Agricultural Scientist

Mung bean [Vigna radiata (L.) Wilczek] cultivation is challenging under the changing climate as less precipitation during the summer season, which is becoming increasingly common, results in soil moisture deficiency and affects production especially at the early growth stages. Hence, this study was conducted to assess the phenology, growth, and protein yield traits of mung bean related to drought tolerance. Eight mung bean genotypes were grown in pots inside a rain-out shelter under well-watered (WW) and water-deficit (WD) conditions. These genotypes included four water stress-tolerant genotypes: G-1 (BARI Mung-8), G-2 (BMX-010015), G-3 (BMX-08010-2), and G-4 (BMX-08009-7), as well as four …

Comparing Conventional And Modified Cage Wheel Performance In Lowland Conditions, Rosalinda Abad, Michael Duldulao, Arthur Fajardo

The Philippine Agricultural Scientist

In agricultural production, significant cost consumption from tillage due to high energy input and low work performance may be reduced by improving the design of hand tractor components, specifically tractive devices. This study aimed to compare the field performance of conventional and modified cage wheels for hand tractors in terms of field efficiency (FE), wheel slip, and fuel consumption (FC). Using the Philippine standard methods of testing for walking-type tractors and a two-tailed t-test to analyze the data, results showed that the modified cage wheel had an FE of 90.09%, wheel slip of 7.78%, FC of 0.22 L/h, and FC …

Rehydration Kinetics Of Green Pea Grains Dried At Different Microwave Powers, Serap Kayisoglu

The Philippine Agricultural Scientist

In this study, both untreated and pre-treated green pea grain samples dried at different microwave output powers (90, 180, and 360 W) were rehydrated at three different temperatures (30ºC, 50ºC, and 70ºC). The rehydration kinetics of dried peas were analyzed using both the Peleg and the first-order kinetic models. Observations revealed that the Peleg model exhibited better agreement with the experimental data. As both microwave power and rehydration temperature increased, the rehydration capacity also increased in both pre-treated and untreated peas. The highest moisture content was observed after rehydration in pre-treated peas dried at 360 W microwave power (2.80 g …

Supplementation Of Commercial Probiotic Lactobacillus Casei In Rearing Early-Stage Silver Therapon (Leiopotherapon Plumbeus) Larvae: Effects On Growth, Body Composition, And Stress Tolerance, Frolan A. Aya, Reylan C. Gutierrez, Mark Joseph Reyes, Luis Maria B. Garcia

The Philippine Agricultural Scientist

Supplementation of probiotics in live feeds and rearing water may improve the growth, survival, and resistance of fish larvae. This study examined the beneficial effect of a commercial probiotic bacteria Lactobacillus casei on the growth, body composition, and stress resistance in early-stage silver therapon (Leiopotherapon plumbeus) larvae. Larvae at 12 d post-hatch (DPH) (9.76 ± 1.32 mm total length [TL] and 13.48 ± 4.80 mg body weight [BW]) were reared in triplicate groups of 15 larvae per tank from 12 – 40 DPH (Phase 1) and 41 – 96 DPH (Phase 2). From 12 – 40 DPH, larvae were fed …

Production Objectives And Trait Preferences Of Smallholder Farmers In The Philippines: Implications For Designing Breeding Schemes Utilizing Indigenous Swine Genetics, Joy Banayo, Kathlyn Louise Manese, Kaito Furusho, Madeline Kingan, Justine Ayomen, Marcelino Saliw-An, Karina Marie Nicolas, Kayvin Joel Petipit, Dorothy Pagbilao, Vea Roven Arellano, Rene Santiago, Flomella Caguicla, Arnolfo Monleon, Giselle Perlas, Giselle Perlas, Rea Palma Ortego, Sharon Singzon, Agapita Salces, Takahiro Yamagata

The Philippine Agricultural Scientist

Profit maximization is not the only production objective in farming. For smallholder farms worldwide, family sustenance often takes priority, with production being viewed more as savings-oriented than market-oriented. Furthermore, market pressures can lead to the mismanagement of indigenous livestock resources, increasing their risk of genetic erosion. To ensure the long-term conservation of the Philippine native pig, this study aimed to determine the various types of native pig farmers and define the intervention strategies for each type. A total of 432 native pig farmers representing seven provinces in the Philippines (Benguet, Kalinga, Isabela, Nueva Vizcaya, Quezon, Marinduque, and Eastern Samar; n …

Metagenomic Sequencing For Early Detection Of Future Engineered Pandemics: Foreshadowing The Privacy Challenge, Nir Eyal, Bridget Williams, Kevin M. Esvelt, Jane R. Bambauer

UF Law Faculty Publications

In this commentary, we imagine how a global system of metagenomic sequencing could be governed in order to reap the benefits and manage the risks. Global institutional engineers and their academic partners would need to develop a new governance model to ensure that all partners involved in a global metagenomic surveillance system cooperate as needed.

Effect Of Integrated Crop–Livestock Systems On Soil Properties And Microbial Diversity In Soybean Production, Namita Sinha, Brett R. Rushing, Aniruddha Acharya, Shankar Gaapathi Shanmugam

Faculty Publications - Biological Sciences

Integrated crop and livestock systems (ICLSs) have been considered an important management-based decision to improve soil health by carbon sequestration. A two-year study (2019–2021) at CPBES in Newton, MS, was conducted to evaluate the effect of an ICLS on soil microbial diversity in the southeastern region of the USA, representing agroclimatic conditions that are warm and humid. Amplicons targeting bacterial 16S rRNA genes and fungal ITS2 regions were sequenced. Taxonomic assignment and characterization of microbial diversity were performed using QIIME2®. Soil fungal diversity pattern showed significant difference (alpha diversity, p = 0.031 in 2020 and beta diversity, p = 0.037 …

The Effect Of Common Road Salts And Organic Additives On Microbial Respiration In Urban Streams, Claire Meara

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

Due to significant population growth and urbanization, there has been an increase in impervious surfaces such as roads and sidewalks. During winter, impervious surfaces are often treated with salt to make road conditions safer. However, this has significant impacts on water quality when salt enters urban streams during runoff events. The addition of road salts to urban streams has been shown to have detrimental effects to various organisms across trophic levels and affects nutrient cycling and greenhouse gas release. These findings have made the development of alternative treatments necessary, such as using organic additives, like beet juice, which can decrease …

Analyzing Food Sources And Food Insecurity Of Kichwa Farming Families In The Ecuadorian Amazon, Reina Watanabe

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

While the right to food is internationally recognized and the United Nations established the sustainable development goal to end hunger and achieve food security by 2030, many households remain without consistent access to food in 2024. In Latin America, approximately 4 in 10 households were reported as food insecure in 2020 with higher rates in rural and indigenous communities. Rural areas, which have great overlap with indigenous communities in Ecuador, experience disproportionately high levels of poverty and food insecurity compared to urban areas. The most populous indigenous nationality in the Ecuadorian Amazon and the participants of this study are the …

Root Plasticity Of Selected Corn (Zea Mays L.) Varieties Grown For Food And Forage In Response To Fertigroe®-N And Urea, Vanica Apostol, Edna Aguilar, Lilia Fernando, Lourdes Edano Ma., Tonette Laude, Eureka Teresa Ocampo

The Philippine Agricultural Scientist

Root plasticity, the capacity of a corn root system to modify its growth and development in response to varying environmental conditions, is a crucial adaptability trait for optimizing water and nutrient uptake, especially in a challenging environments. Understanding root plasticity provides insights into the pattern basis of crop adaptation, contributing to the development of improved corn varieties and agricultural practices that optimize the production of both ear shoots and forage. This study assessed root traits and other morphological-physiological responses of three corn varieties (NK8840, IPB Var 6, and Pearl Sweet) grown for food (ear shoots) and forage (baby corn fodder) …

Ecological Interactions Of Cougars, Deer, And Wild Pigs In The Central Coast Range, California, Mitchell A. Parsons

All Graduate Theses and Dissertations, Fall 2023 to Present

Wild pigs are an introduced species in the Americas that negatively affect ecosystems in many ways. Previous research has documented their negative effects on water quality and vegetation and their potential to spread disease among wildlife, domestic animals, and humans. However, how wild pigs affect predator-prey interactions between native wildlife has received little attention. This research explores multiple interactions between wild pigs, a native predator (cougars), and a native prey (black-tailed deer). First, I studies cougar diet to understand how frequently pigs are used as prey. During this project, I also placed wildlife cameras at cougar killed prey to monitor …

Polymeric Sumo-2/3 Chain Signals Are Antagonistically Regulated By The Sumo-Targeted Ubiquitin E3 Ligase Rnf4 And The Sumo-Specific Isopeptidase Senp6, Shaniah A. Irving M.A., Xiang-Dong Zhang Ph.D.

Biology Theses

Polymeric SUMO-2/3 chain modification is critical for chromosome segregation, DNA damage repair, genome stability, stress responses, and protein degradation. However, how these signals are regulated remains poorly understood. Both the SUMO-targeted ubiquitin E3 ligase (STUbL) RNF4 and the SUMO-specific isopeptidase SENP6 recognize poly-SUMO-2/3 chains through multiple SUMO-interacting motifs (SIMs). RNF4 contains four tandem SIMs within a short (~80 amino acids) region, whereas SENP6 possesses eight SIMs spanning a much larger (~500 amino acids) domain.

Our preliminary results show that overexpressing an RNF4 N-terminal fragment containing four tandem SIMs (wild type, WT), but not an inactive SIMs mutant (Mut), increases levels …

Soybean Seed Yield Distribution Within The Canopy As Affected By Nitrogen Supply, Lucia Bonfanti

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soybean [Glycine max (L.) Merr.] seed yield is influenced by the seasonal availability of resources (i.e., nutrients, light, and water). While nitrogen (N) supply is becoming a soybean yield-limiting factor, the N-induced effect in seed yield components is still unclear. The objective of this research was to assess the effect of N supply on soybean yield components distribution within the canopy. A Full-N treatment, which provided the crop with ample N supply, was compared against a Zero-N treatment in which the crop relied on soil N and biological N fixation at nine high-yielding irrigated soybean environments in Nebraska, with …

Leveraging Within-Field Spatial Variability To Optimize Soybean Yield, Seed Quality, And Profitability, Marina Marly Dalla Betta

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Optimizing yield and seed quality in soybean production is critical for both profitability and meeting market demands. However, within-field variability in soil properties poses a challenge in determining optimal management strategies to maximize soybean yield, seed quality, and profitability. This work aimed to evaluate the spatial variability of soybean fields to optimize soybean seeding rates, seed quality, and profitability. Two case studies were used to carry over this research. The first study looked at the optimal economical site-specific soybean seeding rates using 11 on-farm precision experiments across Nebraska. The second study looked at the protein and oil variability within 22 …

Feeding Habits And Malaria Parasite Infection Of Anopheles Mosquitoes In Selected Agroecological Areas Of Northwestern Ethiopia, Aklilu K. Belay, Abebe Asale, Catherine L. Sole, Abdullahi A. Yusuf, Baldwyn Torto, Clifford M. Mutero, David P. Tchouassi

All Peer-Reviewed Publications

Background: Surveillance of the host–anopheline mosquitoes’ interaction is important for assessing malaria transmission risk and guiding vector control. We assume that changes in malaria vector species’ feeding habits, as well as the surrounding environment, have a substantial impact on varied malaria transmission. In this study, we determined the vertebrate host feeding patterns of anopheline mosquitoes to characterize entomologic risk factors for malaria in Jabi Tehnan, Northwestern Ethiopia. Methods: Blood-fed anophelines surveyed during malaria surveillance in Jabi Tehnan district of northwestern Ethiopia were utilized in this study. They were collected using Centers for Disease Control and Prevention (CDC) light traps deployed …

Effect Of Microsporidia Mb Infection On The Development And Fitness Of Anopheles Arabiensis Under Different Diet Regimes, Godfred Yaw Boanyah, Lizette L. Koekemoer, Jeremy K. Herren, Tullu Bukhari

All Peer-Reviewed Publications

Background: Microsporidia MB (MB) is a naturally occurring symbiont of Anopheles and has recently been identified as having a potential to inhibit the transmission of Plasmodium in mosquitoes. MB intensity is high in mosquito gonads, with no fitness consequences for the mosquito, and is linked to horizontal (sexual) and vertical (transovarial) transmission from one mosquito to another. Maximising MB intensity and transmission is important for maintaining heavily infected mosquito colonies for experiments and ultimately for mosquito releases. We have investigated how diet affects the MB-Anopheles arabiensis symbiosis phenotypes, such as larval development and mortality, adult size and survival, as well …

Neurological Foundations And Technological Interventions For Dyslexia: Advancements And Challenges, Piper Hutson, James Hutson

Faculty Scholarship

Dyslexia, a complex neurological condition affecting reading and language processing, is intricately tied to variations in brain structure and function. This article explores the neurological underpinnings of dyslexia, emphasizing phonological, visual, and attention-related impairments. Furthermore, the analysis highlights various types of dyslexia—phonological, surface, rapid automatized naming, and visual—while addressing their neurological correlations. It also investigates the relationship between dyslexia and other neurodivergent conditions, such as autism and ADHD, focusing on the neurological overlap and differences. To mitigate the challenges associated with dyslexia, advanced technologies such as Virtual Reality (VR) and eye-tracking are discussed for their diagnostic and intervention potential. These …

Examination Of The Relationship Between Algal And Mussel Populations In Streams, Haarika Hebbur

Honors Projects

Due to the ecological importance of both mussel and algal populations, understanding their interactions is critical for further studies in the field. This literature review will explore the functions of both organisms within stream ecosystems, followed by an observational study. The study is designed to evaluate the potential interactions between algal biomass and mussel populations using chlorophyll a concentration as a tool for algal abundance measurement.

2024 Seeded Watermelon Cultivar Evaluation In Indiana, Wenjing Guan

Midwest Vegetable Trial Reports

The annual watermelon cultivar evaluation trial is conducted at Southwest Purdue Agricultural Center (SWPAC) in Vincennes, Indiana. It evaluates yield, fruit quality, and overall plant performance of commercial watermelon cultivars and advanced breeding lines. Purdue Extension and seed companies financially support the trial. The 2024 seeded watermelon cultivar trial evaluated 15 cultivars.

Anthocyanin Extraction Methods: Synthesis Of Morpho-Anatomical Knowledge For Decision-Making Based On Decision-Tree, Gabriel Laquete De Barros, F.T.S. Silva, R.S. Teixeira, J.G. Wagner, C.V. Rombaldi, M. Vizzotto, A. Ubeyitogullari, L. Nora

Biological and Agricultural Engineering Faculty Publications and Presentations

Efficient anthocyanin extraction from emerging food matrices is essential in food technology and requires a precise, consistent, and clear extraction method. This study aimed to develop a decision-tree tool for selecting the optimal anthocyanin extraction technique. A comprehensive data synthesis covering the years 2018 to 2023 was conducted using leading academic databases, including Web of Science, Scopus, Medline, and SciELO. A combination of systematic and non-systematic approaches was employed to guide the decision-making process. The keywords used included “anthocyanin extraction methods,” and studies with more than 10 citations were prioritized, along with recent and relevant publications. Thirty-six articles were analyzed …

Evaluation Of Pierce’S Disease-Resistant Grapevine Cultivars In Upstate South Carolina, Annie Bruno

All Theses

Interest in wine grape production is increasing in South Carolina, but Pierce’s Disease (PD) caused by the xylem-limited bacteria Xylella fastidiosa (Xf) is a major limiting factor. Xf is spread by sap-sucking insect vectors in the Cicadellidae family such as sharpshooters. In the United States, Xf has become endemic to the southeast as global temperatures rise, causing winter temperatures to increase, which allows the bacteria to survive year-round. However, PD-resistant grapevine hybrid cultivars have become available through breeding V. vinifera genes with native American Vitis species that are resistant to Xf. In this study, the PD-resistant grapevine …

Evaluating The Roles Of Pollinators In Shaping The Floral Color Variation Of Phacelia Dubia, Katherine Riddle

All Theses

Floral color variation within a species is a common occurrence and its maintenance has been a long-standing question in evolutionary biology. Differences in flower color between populations can be shaped by pollinator-mediated selection. Pollinators can exhibit innate and learned preferences for color that may influence floral color variation. These preferences may be molded by the visual environment in which pollinators forage. Most current understanding of how pollinators shape floral color variation involves dramatic differences in dominant pollinators between populations (e.g., hawkmoth vs. bee) and most behavioral work utilized model pollinators like honeybee and bumble bee. However, less is known about …

Informing Management Of American Shad (Alosa Sapidissima) In The Carolinas: Evaluating Novel Fish Passage Approaches And Acoustic Tracking Methods, Margaret Gaither

All Theses

Acoustic telemetry is a valuable tool for fisheries scientists to study the movements and migratory behaviors of aquatic organisms. A critical assumption of this method is that tagged fish exhibit similar behaviors and survival rates as their untagged counterparts. To investigate this, we conducted a 12-week laboratory study on adult American Shad (Alosa sapidissima) using gastroesophageal insertion of acoustic transmitters. We implanted 80 fish with dummy transmitters and monitored tag retention and survival. Our analysis, employing a mixed effects Cox’s proportional hazards model, revealed no significant differences in survival between tagged and control fish, regardless of sex. Additionally, …