Life Sciences Commons^™

Evaluation Of Soybean (Glycine Max L.) Seed Inoculation With Bradyrhizobium Japonicum And Bacillus Subtilis On Yield And Root System Architecture: A Herbicide Carryover Perspective, Ncomiwe Andile Maphalala

Theses and Dissertations

Reducing herbicide carryover in soybean production is imperative to sustain future soybean cropping systems in Mississippi and the rest of the world. This research was conducted to determine the response of inoculated soybean to corn (Zea mays L.) residual herbicides. The herbicide treatments included aatrex (atrazine), callisto (mesotrione), lexar (atrazine+mesotrione+s-metolachlor), and steadfast (nicosulfuron+rimsulfuron) at 100%, 75%, 50%, and 25% of the total label rate. Inoculant treatments were Bradyrhizobium japonicum, Bacillus subtilis, and no inoculant. Bacterial inoculants positively impacted most shoot and root growth parameters, significantly increasing depending on the herbicide x inoculant treatment combination and its rate. B.japonicum alone and …

A Correlation Study Between Soil Selenium Levels And Diabetes Prevalence Across U.S. Regions: An Archival Data Analysis (2012-2018), Baoshan Wu

Theses and Dissertations

This study investigates the correlation between soil selenium levels and Type 2 diabetes (T2D) prevalence across U.S. regions between 2012 to 2018. Selenium, an essential trace element, plays an important role in antioxidant defense and metabolism. While appropriate selenium intake may protect against diabetes by improving insulin sensitivity and reducing oxidative stress, excessive intake can have adverse effects. This research analyzed the most recent data, from the Centers for Disease Control and Prevention (CDC) and the U.S. Geological Survey (USGS), for over 3,000 counties in the U.S. A correlation analysis model was used to determine the relationship between soil selenium …

Identifying Opportunities For Nature-Based Solutions With Geospatialized Life Cycle Assessments And Fine-Scale Socioecological Data, Gabriela Shirkey, Annick Anctil, Ranjeet John, Venkatesh Kolluru, Leah Mungai, Herve Kashongwe, Lauren T. Cooper, Ilke Celik, Joshua B. Fisher, Jiquan Chen

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As we increasingly understand the impact that land management intensification has on local and global climate, the call for nature-based solutions (NbS) in agroecosystems has expanded. Moreover, the pressing need to determine when and where NbS should be used raises challenges to socioecological data integration as we overcome spatiotemporal resolutions. Natural and working lands is an effort promoting NbS, particularly emissions reduction and carbon stock maintenance in forests. To overcome the spatiotemporal limitation, we integrated life cycle assessments (LCA), an ecological carbon stock model, and a land cover land use change model to synthesize rates of global warming potential (GWP) …

Key Epigenetic And Signaling Factors In The Formation And Maintenance Of The Blood-Brain Barrier, Jayanarayanan Sadanandan, Sithara Thomas, Iny Elizabeth Mathew, Zhen Huang, Spiros L Blackburn, Nitin Tandon, Hrishikesh Lokhande, Pierre D Mccrea, Emery H Bresnick, Pramod K Dash, Devin W Mcbride, Arif Harmanci, Lalit K Ahirwar, Dania Jose, Ari C Dienel, Hussein A Zeineddine, Sungha Hong, Peeyush Kumar T

Faculty, Staff and Student Publications

The blood-brain barrier (BBB) controls the movement of molecules into and out of the central nervous system (CNS). Since a functional BBB forms by mouse embryonic day E15.5, we reasoned that gene cohorts expressed in CNS endothelial cells (EC) at E13.5 contribute to BBB formation. In contrast, adult gene signatures reflect BBB maintenance mechanisms. Supporting this hypothesis, transcriptomic analysis revealed distinct cohorts of EC genes involved in BBB formation and maintenance. Here, we demonstrate that epigenetic regulator's histone deacetylase 2 (HDAC2) and polycomb repressive complex 2 (PRC2) control EC gene expression for BBB development and prevent Wnt/β-catenin (Wnt) target genes …

Ecological Niches Applied To Socioeconomic Phenomena: The Case Of The Colombian Internal Conflict, Alexander Alegría, Laura Jiménez, Jhon Jairo Alvarado-Quintero

Peace and Conflict Studies

Recent studies of the Colombian conflict have shown that struggle for resource accumulation and territorial control, in a very competitive and violent environment in which the illegal armed groups are involved, is crucial to their survival and development. Here, we applied a highly successful methodology from ecology (Ecological Niche Modelling) to the problem of identifying the ideal socioeconomic conditions for the presence of a Colombian illegal armed group, named the Revolutionary Armed Forces of Colombia (FARC). We analyzed some determining factors of FARC´s presence and permanence within the Colombian territory that reflect aspects of the socioeconomic dynamics and productive capacity …

Wildlife Ambassadors, Carissa Lukac, Ibrahim Bhutta, Sunishka Deshpande, Amogh Jani

Purdue Journal of Service-Learning and International Engagement

Students at Purdue University are largely unaware of conservation efforts and research being done by both their fellow students and local organizations. This is why under the guidance of our mentor and as a part of the HIFI Lab, our group, the Wildlife Ambassadors, has created a website meant to push ecological efforts at Purdue University. This is done through the use of animal ambassadors, including but not limited to a wolf at Wolf Park, a local organization with which this project has been conducted in correspondence. This website will integrate and display the work of over three dozen other …

Jovial Family Farm Facilitates Intergenerational Learning Opportunities Through Urban Farming, Maera Williams

Purdue Journal of Service-Learning and International Engagement

Maera Williams is a sophomore in Environmental and Ecological Engineering at Purdue University. She joined the Engineering Projects in Community Service (EPICS) Urban Farming team as a freshman and now serves as project manager of ten undergraduate students collaborating with Jovial Family Farm to design and develop three indoor hydroponics systems for a laboratory space on their property in Broad Ripple, IN. Jovial Family Farm is a nonprofit organization founded by Drs. Bobbie and Brian Jellison with the mission to provide senior citizens, their families, and their communities with meaningful engagement opportunities on an intergenerational scale through urban agricultural activities. …

Wolf Park, Pawsing For Impactful Beginnings: The Role Of Community Engagement And Education In Service-Learning, John W. Robbins, Deniz Eksioglu, Kaushal Patel

Purdue Journal of Service-Learning and International Engagement

Our team’s endeavor, conducted under the guidance of Dr. Kristen Bellisario, encapsulates a service-learning journey with Wolf Park, a sanctuary dedicated to the conservation and research of wolves and wildlife. Through immersive experiences, community outreach, and collaborative partnerships, our team sought to amplify public understanding of wildlife conservation and inspire a sense of responsibility among participants. This essay examines the impact of our initiatives on both the community and ourselves, emphasizing the transformative potential of education, engagement, and community partnerships in effecting positive societal change. Our team advocates for sustained support for wildlife conservation efforts and underscore the necessity of …

Beyond The Bench: Redefining Research Impact In Society, Nouran Amin

Purdue Journal of Service-Learning and International Engagement

The following essay reports on the reflective experiences of the author’s time completing a certificate program “Advancing Graduate Research Impact in Society” offered by Purdue University’s Office of Community Engagement in Fall 2023. It begins by narrating the author's journey as a Muslim woman in STEM spaces, highlighting the lack of relatable role models and the ensuing dissonance between aspirations and prevailing narratives. Through introspection, the essay progresses to examine the paradox of publicly funded but inaccessible science, which often fails to engage with community needs and priorities. The essay underscores the importance of inclusivity and diverse representation in scientific …

Michigan Academician, Volume 49, Issue 1

Michigan Academician

2024 Conference Abstracts

5-Substituted Flavones—Another Class Of Potent Triplex Dna-Specific Ligands As Antigene Enhancers, Landy Gu, Nghia Tran, Vanessa M. Rangel, Mandeep Singh, Krege M. Christison, Geoff P. Lin-Cereghino, Liang Xue

Pacific Faculty Work

In the field of drug development, the quest for novel compounds that bind to DNA with high affinity and specificity never ends. In the present work, we report the newest development in this field, namely, triplex DNA-specific binding ligands based on the 5-substituted flavone scaffold in our lab. Biophysical studies showed that the newly synthesized flavone derivatives (depending on the side chains) bind to triplex DNA with binding affinities better than or similar to 5-substituted 3,3′,4′,7-tetramethoxyflavonoids. These compounds selectively stabilize triplex DNA while having little effect on duplex DNA, as verified by various biophysical methods. A detailed structural analysis suggested …

Design, Synthesis, And Nmr-Guided Characterization Of A Targeted Covalent Inhibitor-Like Molecule Against Ivyp1 From P. Aeruginosa, Samuel Taylor Moore

Master's Theses

Multi-drug resistance poses a serious threat to future generations and historical antibiotic pipelines; consequently, the medical and economic burdens associated with treating multidrug-resistant bacteria are substantiated. In this context, P. aeruginosa (PA) emerges as one of the most significant healthcare challenges, being a leading cause of resistance-associated mortality worldwide. Despite modern efforts to combat these poor outcomes, drug-resistant cases continue to rise, and the need for novel antibiotic treatment is apparent. To this end, we investigated relevant resistance mechanisms and past antibiotic targets within PA, and in doing so, we identified relationships between peptidoglycan biology and a periplasmic protein, Inhibitor …

Review – Insect Farming For Food And Feed In The Global South: Focus On Black Soldier Fly Production, K. B. Barragán-Fonseca, D. Gómez, C. H. Lalander, D. Dzepe, S. Y. Chia

All Peer-Reviewed Publications

Clear differences exist between the Global South and the Global North with respect to economic development. The majority of small and medium-sized insect production farms are located in Africa, Asia, and Latin America, which face challenges to food production and organic waste management in general. These regions have a long history of insect use, as well as environmental advantages, making production of insects in general - and the black soldier fly in particular - a promising option for sustainable food production and organic waste management. This study aimed to identify the current state of black soldier fly (Hermetia illucens L.) …

Climate And Gypsum Parent Material Shape Biocrust Communities And Moss Ecology In The Chihuahuan And Mojave Deserts, Nicole Pietrasiak, Katelyn G. Gobbie, Brian Jusko, Rebecca E. Drenovsky

Life Sciences Faculty Research

Biological soil crust communities (biocrusts) establishing on gypsum soils have been well-documented for their prolific appearance and rich diversity of lichens and bryophytes. However, studies characterizing gypsum biocrusts have occurred primarily outside of the U.S., most of which lack comparisons to other soil types. We conducted intensive field surveys to evaluate the ground cover and frequency of biocrust functional groups and moss species on gypsum and non-gypsum soils in the U.S. regions with the most extensive gypsum outcrops, the northern Chihuahuan and eastern Mojave Deserts. Study sites were stratified by geomorphology and paired, so that every gypsum site was matched …

Gonadal Absence Of Pig-1: Exploration Of Pig-1 In The Gonad Of Caenorhabditis Elegans, Winston S. Bennah

Undergraduate Theses

Caenorhabditis elegans are model organisms frequently studied to better understand biological processes. They have short life spans and produce a large number of progeny. Additionally, many of their molecular development processes can be found in human, providing insight into cell death and cell fate. In this project, our research aims to create a triple mutant strain to test the importance of the pig-1 gene in the gonad of C. elegans. This strain carries the following alleles: ckb-3::degron; him-8; gfp::pig-1. The pig-1 gene has been previously studied in neuroblast cells in C. elegans and is required for …

12.02.2024 Orsp Connect, Liz Williamson

ORED Newsletter

Email Address Matters

All of Us Researcher Symposium

Welcome Anya Goldman

Aquatic Plant Threats To The Columbia River, Jacob Rose, Gabriel Campbell

Center for Lakes and Reservoirs Publications and Presentations

These presentation slides provide an overview of some of the invasive aquatic plants that pose an emerging threat to Oregon waterways. It contains botanical notes and high-quality photographs of approximately nine different plant species. Additional slides emphasize the importance of early detection and rapid response, as well as existing resources for invasive species outreach. This presentation was given orally at the Oregon Department of Agriculture's Interagency Noxious Weed Symposium to an audience of natural resource practitioners.

Emerging Aquatic Plant Threats To Oregon Waterways, Jacob Rose, Gabriel Campbell

Center for Lakes and Reservoirs Publications and Presentations

This brief presentation provides an overview some of two invasive aquatic plants that pose a threat to the Columbia River, where it borders Oregon and Washington. Flowering rush (Butomus umbellatus) and fragrant waterlily (Nymphaea odorata) threaten aquatic habitats up and down the Columbia River. Staff from the Center for Lakes & Reservoirs promoted a quick, picture-based key for flowering rush and lookalikes. This presentation was given orally at the Oregon Department of Agriculture's Interagency Noxious Weed Symposium to an audience of natural resource practitioners.

Hypoxia-Inducible Factor 3Α1'S Role In Promoting Iron Loading, Tumorigenesis, And Metastasis In Colorectal Cancer, Luke B. Villareal

Biomedical Sciences ETDs

The interplay between hypoxia and iron metabolism drives colorectal cancer (CRC) progression. This dissertation investigates hypoxia-inducible factor 3α1 (HIF-3α1), a protein linked to poor CRC outcomes, focusing on its roles in metastasis, epithelial-to-mesenchymal transition (EMT), and iron loading via transferrin receptor (TFRC). HIF-3α1 promotes CRC cell migration by upregulating zinc finger E-box binding homeobox 2 (ZEB2) and suppressing N-myc downstream-regulated gene 1 (NDRG1), while TFRC-mediated iron accumulation supports tumor growth and survival. Iron chelation reduced EMT markers, migration, and tumor growth, highlighting iron's critical role. Additionally, HIF-3α1-induced TFRC expression altered nucleotide synthesis enzymes carbamoyl-phosphate synthetase-aspartate transcarbamoylase-dihydroorotase (CAD) and phosphoribosyl pyrophosphate …

Analysis Of Natural Structures And Chemical Mapping Data Reveals Local Stability Compensation In Rna, Robert L. Cornwell-Arquitt, Riley Nigh, Michael T. Hathaway, Joseph D. Yesselman, David A. Hendrix

Department of Biochemistry: Faculty Publications

RNA molecules adopt complex structures that perform essential biological functions across all forms of life, making them promising candidates for therapeutic applications. However, our ability to design new RNA structures remains limited by an incomplete understanding of their folding principles. While global metrics such as the minimum free energy are widely used, they are at odds with naturally occurring structures and incompatible with established design rules. Here, we introduce local stability compensation (LSC), a principle that RNA folding is governed by the local balance between destabilizing loops and their stabilizing adjacent stems, challenging the focus on global energetic optimization. Analysis …

Safety, Immunogenicity, And Efficacy Of A Recombinant Vesicular Stomatitis Virus Vectored Vaccine Against Severe Fever With Thrombocytopenia Syndrome Virus And Heartland Bandavirus, Philip Hicks, Tomaz B. Manzoni, Jonna B. Westover, Raegan J. Petch, Brianne Roper, Brian B. Gowen, Paul Bates

Animal, Dairy, and Veterinary Science Faculty Publications

Background: Severe fever with thrombocytopenia syndrome virus (STSV) is a recently emerged tickborne virus in east Asia with over 18,000 confirmed cases. With a high case fatality ratio, SFTSV has been designated a high priority pathogen by the WHO and the NIAID. Despite this, there are currently no approved therapies or vaccines to treat or prevent SFTS. Vesicular stomatitis virus (VSV) represents an FDA-approved vaccine platform that has been considered for numerous viruses due to its low sero-prevalence in humans, ease in genetic manipulation, and promiscuity in incorporating foreign glycoproteins into its virions. Methods: In this study, we developed a …

The 2024 Nobel Prize In Physiology Or Medicine: Microrna Takes Center Stage, George A Calin, Florent Hubé, Michael R Ladomery, Nicholas Delihas, Manuela Ferracin, Laura Poliseno, Luca Agnelli, Suresh K Alahari, Ai-Ming Yu, Xiao-Bo Zhong

Faculty, Staff and Student Publications

The Non-coding Journal Editorial Board Members would like to congratulate Victor Ambros and Gary Ruvkun, who were jointly awarded the 2024 Nobel Prize in Physiology or Medicine for their groundbreaking discovery of microRNAs and the role of microRNAs in post-transcriptional gene regulation, uncovering a previously unknown layer of gene control in eukaryotes [...].

The Effect Of Dha On Myo-Inositol Levels In Lymphoblasts Derived From Patients With Bipolar Disorder, Katherine Pierre

Honors Theses

Bipolar disorder is a mood disorder that is characterized by recurring episodes of mania and depression. Bipolar I disorder is accompanied by severe episodes of mania and depression, while bipolar II disorder is characterized by a milder form of mania. It has been hypothesized that currently approved treatments for this disorder, lithium and valproic acid, exert their therapeutic effect by decreasing myo-inositol levels intracellularly. However, these treatments may lead to undesired side effects, creating a need for safer treatments. Omega-3 fatty acids are polyunsaturated fats that have been shown to be effective in relieving symptoms of bipolar disorder.

To investigate …

New Species And Records Expand The Checklist Of Cellular Slime Molds (Dictyostelids) In Jilin Province, China, Zhaojuan Zhang, Liang He, Yuqin Sun, Zhuang Li, Yingqun Yang, Chao Zhai, Steven Lee Stephenson, Xiangrui Xie, Yu Li, Pu Liu

Biological Sciences Faculty Publications and Presentations

Dictyostelids represent a crucial element in the protist community, and their abundant presence in Jilin Province underscores their indispensable role in biodiversity conservation. In the present study, a resource survey of dictyostelids used random sampling to collect 28 soil samples from five localities in Changbai Korean Autonomous County, Jilin Province. In addition, a compilation of dictyostelid species reported from Jilin Province was developed, based on a thorough review of the literature. The survey yielded fifteen isolates of dictyostelids, comprising six species from four genera. Notably, two new species (Dictyostelium longigracilis sp. nov. and Dictyostelium macrosoriobrevipes sp. nov.) were described using …

Preoperative Detection Of Extraprostatic Tumor Extension In Patients With Primary Prostate Cancer Utilizing [68ga]Ga-Psma-11 Pet/Mri, Clemens P Spielvogel, Jing Ning, Kilian Kluge, David Haberl, Gabriel Wasinger, Josef Yu, Holger Einspieler, Laszlo Papp, Bernhard Grubmüller, Shahrokh F Shariat, Pascal A T Baltzer, Paola Clauser, Markus Hartenbach, Lukas Kenner, Marcus Hacker, Alexander R Haug, Sazan Rasul

Faculty, Staff and Student Publications

Objectives: Radical prostatectomy (RP) is a common intervention in patients with localized prostate cancer (PCa), with nerve-sparing RP recommended to reduce adverse effects on patient quality of life. Accurate pre-operative detection of extraprostatic extension (EPE) remains challenging, often leading to the application of suboptimal treatment. The aim of this study was to enhance pre-operative EPE detection through multimodal data integration using explainable machine learning (ML).

Methods: Patients with newly diagnosed PCa who underwent [68Ga]Ga-PSMA-11 PET/MRI and subsequent RP were recruited retrospectively from two time ranges for training, cross-validation, and independent validation. The presence of EPE was measured from post-surgical histopathology …

Elucidating The Role Of Astrocytes In Norepinephrine Neuromodulation, Katheryn Bry Lefton

Arts & Sciences Graduate Student Theses and Dissertations

Norepinephrine, a wakefulness-associated neuromodulator, profoundly reshapes neural systems, from synaptic circuits to behavior. Through decades of research, a substantial catalogue on the effects of noradrenergic signaling on behavior and networks has been generated. How norepinephrine remodels synaptic circuitry is widely thought to underlie the larger changes in neural networks and behavior, highlighting the need for a more thorough understanding of the circuit effects of norepinephrine neuromodulation. However, the mechanistic details of the norepinephrine on synapses are still unclear. In recent decades, a large body of work has shown that norepinephrine acts not just on neurons, but on glial cells including …

A Conjugate Of An Egfr-Binding Peptide And Doxorubicin Shows Selective Toxicity To Triple-Negative Breast Cancer Cells, Phi-Phung Than, Shih-Jing Yao, Emad Althagafi, Kamaljit Kaur

Pharmacy Faculty Articles and Research

Selective targeting of cancer cells via overexpressed cell-surface receptors is a promising strategy to enhance chemotherapy efficacy and minimize off-target side effects. In this study, we designed peptide 31 (YHWYGYTPERVI) to target the overexpressed epidermal growth factor receptor (EGFR) in triple-negative breast cancer (TNBC) cells. Peptide 31 is internalized by TNBC cells through EGFR-mediated endocytosis and shares sequence and structural similarities with human EGF (hEGF), a natural EGFR ligand. Unlike hEGF, peptide 31 does not induce cell migration in TNBC cells. A novel conjugate of peptide 31 with doxorubicin (Dox) retains selectivity for TNBC cells and exhibits significant toxicity comparable …

Exfoliated Hydrotalcite-Transition Metal Complex Composite For Eco-Friendly And Efficient Catalytic Degradation Of 4-Nitrophenol, Sidra Khan, Najma Memon, Saima Q. Memon, Yilmaz Yurekli

Karbala International Journal of Modern Science

Nitrophenols are notorious aquatic organic contaminants found as degradation products of various parent compounds, including pesticides and industrial chemicals that persist in the environment and must be removed. Catalytic degradation is one of the feasible routes to clean the contaminated water systems, however, environmental contamination with catalysts is also widespread. Herein, we report an environmentally friendly catalyst based on composited Fe-Schiff’s base with exfoliated layered double hydroxides (LDH) of aluminum and nickel (hydrotalcite). The composite showed agglomerated pleated LDH structures sheathed with Fe(III)SB. Nitrogen adsorption isotherm data exhibited improved surface area and narrow pores patterns for composite as compared to …

Highly Porous Nanocarriers For Osmolyte Delivery And Drought Mitigation In Wheat And Ryegrass, David Britt

Funded Research Records

No abstract provided.

Study Of The Brain Anatomy Of Three Extinct Marsupials: Thylacinus Cynocephalus, Thylacoleo Carnifex, And Silvabestius Johnnilandi, Francisco Garcia

Honors Program Theses and Research Projects

Marsupials are pouched mammals that today are mainly found in Australasia and South America. Marsupials have proven to be quite intriguing to evolutionary biologists who note how some marsupials resemble placentals in anatomy due to convergent evolution, with both marsupials and placentals filling similar niches in their respective environments. As of today, studies interested in marsupial brain evolution have published descriptions of cranial endocasts for several species of marsupials, with the number of descriptions seeing a massive boost over the last 20 years with the arrival of CT imaging technology. However, no comprehensive study of brain evolution in marsupials has …