Life Sciences Commons^™

Unwritten Rules And Oral Transmission In Architectural Proportion Systems: Case Study Of Bubungan Tinggi House, Huzairin. Muhammad Deddy, Dila Nadya Andini, Rudi Hartono, Anna Oktaviana, Dahliani Dahliani

ASEAN Journal on Science and Technology for Development

The proportional systems in vernacular architecture often exist without formal written codification, raising questions about their transmission across generations. Bubungan Tinggi House which is a replica of the Banjar Kingdom palace was built by Banjarese merchants and aristocrats from the 16th to the 19th centuries, showing a uniform aesthetic quality, which indicates a regularity in the proportions of its form. However, no historical written manuals detailing these proportions are known to exist. To prove the existence of regularity in the Bubungan Tinggi House proportion system, research was conducted by taking 7 Bubungan Tinggi House samples spread across South Kalimantan province, …

Endocrine Responses To Two Distinct Foraging Contexts In The Bonobo (Pan Paniscus), Lauren Mitchell

Master's Theses

In gregarious animals, a social structure characterized by female dominance is relatively rare. However, bonobos (Pan paniscus), one of the two species most closely related to humans, are characterized by partial female dominance, with females forming close social bonds. In contrast, chimpanzees (Pan troglodytes), a close relative of the bonobo, are characterized by strong male-male bonding and social dominance with female chimpanzees lacking close social bonds. There is a lack of consensus concerning the reasons for these behavioral differences in Pan, specifically, the physiological processes responsible for female dominance in bonobos. The role of hormones …

Tricolored Bat (Perimyotis Subflavus) Population Genetic Structure In The Southeastern United States, Laura Henderson

Master's Theses

Tricolored bats (Perimyotis subflavus) have experienced substantial population losses from white-nose syndrome (WNS), a disease caused by the pathogenic fungus Pseudogymnoascus destructans (Pd) which infects hibernating bats. Determining population genetic structure helps assess genetic diversity and the impacts of wildlife threats to populations. Pre-WNS data shows weak-to-negligible structure and panmictic P. subflavus populations at core portions of their range. However, current genetic data from their southeastern U.S. range is lacking. I sought to determine whether recent genetic data help resolve genetic structure among southeastern populations and assess genetic differences at two stages of impact: post-WNS and …

Effects Of Ionophore And Yeast Addition To The Diet On Starch Digestion And Rumen Andblood Parameters In Sheep With Subacute Rumen Acidosis, Şevket Evci̇, Mehmet Aki̇f Karsli, Mehmet Demi̇rci̇, Gökhan Şen

Turkish Journal of Veterinary & Animal Sciences

This study aimed to investigate the prevention of acidosis in ruminants, which causes yield and financial losses, and toevaluate the effects of feed additives on starch digestion. Four male Bafra yearling lambs with cannulated rumens were used in a 60-daystudy. Each lamb underwent 10 days of adaptation to a ration and 5 days of sampling for four different rations including a control ration(CR), monensin ration (MR), Saccharomyces cerevisiae ration (SR), and a ration with the combination of monensin and Saccharomycescerevisiae (MSR). The experiment followed a 4 × 4 Latin-square design. Dry matter intake and digestion rates were recorded as 2404 …

Characterization Of The Biofilm-Forming Ability And Certain Virulence Characters Ofaeromonas Spp. Isolates From Rainbow Trout, Türker Çelebi̇, Ertan Emek Onuk, Esra Demi̇rbaş, Gökçen Di̇nç

Turkish Journal of Veterinary & Animal Sciences

Aeromonas spp., commonly found in the aquatic environment, cause infections in both fish and humans. Their pathogenicitydepends on various virulence factors and ability to form biofilm. The current study aimed to determine the biofilm-forming capabilitiesand certain virulence characteristics of 25 Aeromonas spp. isolates obtained from rainbow trout in Türkiye. The biofilm-forming abilitiesof isolates were investigated comparatively using Congo red agar (CRA), the tube method (TM), and tissue culture plates (TCPs).Potential virulence factors, including hemolytic activity, gelatinase production, serine protease activity, DNase activity, and motility,were evaluated using phenotypic tests. Additionally, the distribution of four known virulence genes, namely aerA, exu, fla, …

Cardiac Timing Effects On Response Speed Are Modulated By Blood Pressure But Not Heart Rate Variability In Healthy Young Adults, Xiao Yang, Catalina Roldan, Michael Gazzanigo, Yasmine Nabulsi, Fang Fang

Research and Infrastructure Service Enterprise (RISE) Faculty Publications

Cardiac timing effects reflect the dynamic interplay between interoceptive and exteroceptive processes. Human information processing tends to be facilitated during cardiac diastole and inhibited during systole, reflecting autonomic regulation and the neuromodulation by baroreceptor afferents. Thus, blood pressure (BP) and vagally-mediated heart rate variability (vmHRV) are potential modulators of those effects. Additionally, cognitive control appears to play a critical role in the processes. However, whether cardiac timing effects are influenced by those factors remains unclear. The present study aimed to clarify these relationships. Fifty-one healthy young adults completed three experimental sessions to assess BP, short-term HRV, and cardiac timing effects. …

Binoculars To Bytes: Development And Field Validation Of An Ai-Driven System For Avian Monitoring, Christian J. Dupree

Graduate Student Theses, Dissertations, & Professional Papers

Autonomous camera-trap arrays coupled with artificial-intelligence (AI) vision can lift bird monitoring beyond the spatial, temporal, and labor limits of traditional field surveys. We present Binoculars to Bytes (B2B), an open-source pipeline that turns 180–360° time-lapse imagery into analysis-ready avian data. At Freezout Lake Wildlife Management Area (Montana, USA) the system ran four-hour morning deployments during spring and fall migrations (2023–2024). A YOLO-NAS detector, incrementally refined with a “Specialized Localized Iterative Model” workflow, quadrupled local accuracy and, after confidence-based species-binning, cut false-positive rates in half. Daily AI species lists were benchmarked against contemporaneous eBird citizen-science checklists and recovered ≥ …

Mountain Pine Beetle Host Tree Selection And Climate-Growth Dynamics In Whitebark Pine, Hannah Rose Alverson

Graduate Student Theses, Dissertations, & Professional Papers

Recent climate-driven outbreaks of mountain pine beetles (Dendroctonus ponderosae) in whitebark pine (Pinus albicaulis) have raised fears of increasing whitebark pine mortality with increased warming and drought due to climate change. However, little is known about how whitebark pine responds to climate, what characteristics may predict whitebark pine susceptibility to mountain pine beetle outbreaks, or how these may interact. This information is critical in understanding how whitebark pine might persist in a changing climate. My research investigated how whitebark pine growth responds to various climate variables and how these responses may be predictive of attack by …

College Athlete Workload Management To Improve Performance, Brody Reid

Graduate Student Theses, Dissertations, & Professional Papers

Load management is an often used and misunderstood term within the realm of sport science. It has been described as the reason behind numerous soft tissue injuries as well as being the reason star athletes sit on the bench for games. This review aims to synthesize the existing literature regarding the workload management paradox within sport. Seminal work in this topic has been gathered mostly by Tim Gabbett in the paper “The Injury Prevention Paradox” where a relationship between fitness gain and fatigue accrued is outlined. This theory was first proposed by Roger Bannister in 1975. This paper …

Effect Of Exercise In Children, Jessica L. Moler

Graduate Student Theses, Dissertations, & Professional Papers

Although the health benefits of exercise in adults are well established (Ruegsegger & Booth, 2017), the role of physical activity in promoting health in children is often overlooked. This narrative review synthesizes current research on the physical, cognitive, and emotional benefits of exercise in children aged 5 to 18, with a focus on providing practical, evidence-based guidance for families, educators, and healthcare providers. Studies consistently show that moderate-to-vigorous physical activity reduces cardiovascular and metabolic risk factors (Dias et al., 2017; Kovács et al., 2009; Migueles et al., 2023), improves insulin sensitivity (Bell et al., 2007; Davis et al., 2012), and …

Utilization Of Sprint Interval Training In Intermittent Sports, Marcus David Garcia

Graduate Student Theses, Dissertations, & Professional Papers

Sprint interval training (SIT) is a powerful training method that involves short, maximal sprint efforts followed by brief recovery periods. This modality shares similar physical demands of intermittent sports, where athletes repeatedly transition between maximal exertion and submaximal efforts or rest. The purpose of this paper is to explore the impact of SIT on key performance metrics in intermittent sports, such as sprint speed, repeated sprint ability (RSA), aerobic capacity, and anaerobic power. SIT not only enhances anaerobic performance but also promotes adaptations like faster phosphocreatine resynthesis, increased glycolytic enzyme activity, and shifts in muscle fiber composition. These adaptations contribute …

The Devil In The Bakken, Kennedy Lorraine Delap

Graduate Student Theses, Dissertations, & Professional Papers

In 2008 the oil boom hit North Dakota. The oil brought wealth and human health concerns to the state and specifically, the Fort Berthold Indian Reservation. In July of 2024 the largest Clean Air Act Settlement of its kind happened on the reservation due to Marathon Oil emitting thousands of tons more pollutants that regulations outlined. This story dives into the human health effects, advocacy and the difficulty in balancing health and wealth on the reservation.

Modeling Neighborhoods As Fuel For Wildfire, Bryce Alan Young

Graduate Student Theses, Dissertations, & Professional Papers

Wildfire models drive billions of dollars in risk mitigation efforts. However, the modeling community currently lacks a representative fuelscape on which to base simulations of fire spread in the built environment and the wildland-urban interface (WUI) where vegetation and structures act together as fuel for wildfire. This thesis advances wildfire risk modeling by addressing the underdeveloped representation of the built environment in existing frameworks. By identifying inconsistencies in how structure and defensible space features are defined and used across empirical studies, predictive indices, and fire spread models, this research lays the groundwork for standardized modeling approaches and feature selection (Chapter …

Bridging The Gap Between Plot-Level And Landscape-Scale Analysis For Wildfire Risk Assessment, Vanessa Leigh Niemczyk

Graduate Student Theses, Dissertations, & Professional Papers

Remote sensing technology has advanced greatly over the past couple of decades proving its ability to aid in wildfire risk assessment and improve our understanding of forest structure and fuel inventory across the landscape. While some aerial and satellite sensors perform better than others, they all have a common weakness, their reduced ability to capture understory fuels with high detail. Terrestrial laser scanning is an emerging solution due to its understory perspective. This research leverages the beneficial aspects of both terrestrial laser scanning and various aerial- or satellite-based remote sensing platforms (aerial laser scanning, digital aerial photogrammetry, and Sentinel-2) to …

Spatial And Temporal Patterns Of Nutrient Limitation In A Western Montana River, Matthew T. Nichols

Graduate Student Theses, Dissertations, & Professional Papers

Enhanced loading of nitrogen (N) and phosphorus (P) is pervasive in rivers around the world. As a consequence of nutrient-rich conditions, many well-lit rivers experience severe algal blooms, which threaten water quality and aquatic habitats. Nutrient enrichment in the upper Clark Fork River, located in western Montana, has increased the productivity of benthic algae, Cladophora glomerata, which routinely forms extensive blooms during summer growing seasons (July – September). Addressing eutrophication in rivers begins with identifying the nutrients that contribute toward algal productivity. I deployed nutrient diffusing substrates (NDS), collected bi-weekly surface water samples, and conducted algal surveys at four …

Better Together: Leveraging Existing Research To Evaluate Population Trends, Habitat Selection, And Species Interactions Of Mesocarnivores, Jordan Lee Heiman

Graduate Student Theses, Dissertations, & Professional Papers

Whether from human impacts, climate change, or extreme fires, landscapes around the world are rapidly changing (Foley et al. 2005, Grimm et al. 2008, Bowman et al. 2020). As these landscapes change, it is clear that many ecosystems and species are being negatively affected (Laliberte and Ripple 2004, Butchart et al. 2010, Freeman et al. 2018, Li et al. 2022). With an expanding number of species facing extinction risks, it is critical for agencies to know when and where to focus their limited resources and conservation efforts (Martin et al. 2012, Auerbach et al. 2014, Bal et al. 2018). To …

Penta Ef-Hand Protein Alg-2 Regulates Copii Activity At Eres In Response To Calcium Signaling, Jacob Ryan Lapka

Graduate Student Theses, Dissertations, & Professional Papers

Intracellular protein trafficking is critical for maintaining cellular homeostasis, relying on highly regulated vesicular transport pathways originating from the endoplasmic reticulum (ER). Central to this process is the COPII coat complex, which governs cargo export at ER exit sites (ERES) by selectively packaging secretory proteins into transport vesicles. Recent studies highlight the regulatory role of calcium (Ca²⁺) signaling at ERES, where the Ca²⁺-binding Penta EF-hand proteins ALG-2 and peflin modulate COPII coat dynamics and cargo sorting in a context-dependent manner. In Chapter 2, we show that knockdown of the Inositol 1,4,5-trisphosphate receptor-3 (IP3R-3) in normal rat …

Linking Empirical Data And Numerical Simulation To Characterize Dynamic Fire Behavior Associated With Interacting Firelines, Marta Sergeevna Jerebets

Graduate Student Theses, Dissertations, & Professional Papers

Understanding fuel pattern-fire process relationships is key for predicting fire behavior and effects with follow-on benefits to proactive fire management and model validation. To characterize dynamic fire behavior, this thesis leverages empirical data and numerical simulation through two complementary studies.

In the first study, longwave thermal sensors aboard unmanned aerial systems (UAS) were used to capture fine-scale fire behavior in two experimental grass burns. A novel paired design was used to quantify the effects of fuel arrangement on fire behavior with 3.66 m diameter treatments cut to a height of 0.15 m. The treatments ephemerally reduced fire rate of spread …

Water Scarcity In The Bitterroot Valley, August W. Guenthner

Graduate Student Theses, Dissertations, & Professional Papers

Water scarcity in Montana’s Bitterroot Valley is an increasingly urgent issue, driven by the dual pressures of climate change and rapid population growth. Since 1970, the Bitterroot has been the fastest-growing region in the state, with much of this growth occurring in low-density rural subdivisions that rely on individual groundwater wells. Simultaneously, climate change has reduced snowpack levels, leading to diminished springtime recharge of surface water systems that are vital for both ecological and agricultural needs. For the Valley’s agricultural producers, adapting to decreasing water availability will be essential for sustaining their operations. This research project was designed to better …

Ineligible Partners: Tribal Nations And Cooperative Federalism In The Historical Development Of National Forest Law And Policy, James H. Baker

Graduate Student Theses, Dissertations, & Professional Papers

Lands within the National Forest System (NFS), like all federal public lands, are rooted in Aboriginal Title and were once exclusively inhabited by Indigenous peoples and communities. Through the process of treaty-making, the federal government amassed millions of acres of ceded Tribal lands, many of which are now managed by federal public land agencies, including 194 million acres managed by the U.S. Forest Service (USFS). Several Tribes reserved various use and property rights on these lands that are protected by the U.S. Constitution’s Treaty and Supremacy Clauses. The federal government also has an overarching trust obligation to Tribes – a …

A Novel Positive Allosteric Modulator Of Glun1/3 Nmda Receptors, Samuel A. Galindo

Graduate Student Theses, Dissertations, & Professional Papers

The GluN3-containing (GluN1/3) N-methyl-D-aspartate (NMDA) receptors are glycine activated ligand-gated ion channels that are members of the family of excitatory ionotropic glutamate receptors. Compared to the glycine/glutamate-activated GluN2- containing NMDA receptors (GluN1/2), which have been extensively studied, the GluN1/3 receptors are poorly understood, but are implicated in neuronal processes related to synaptic maturation and plasticity. GluN1/3 receptors are also implicated in a variety of neurological diseases. In addition to their poor understanding, we lack proper pharmacological tools for the study and modulation of these GluN1/3 receptors. In this study, we evaluate the activity and mechanism of action for AIMS-129 as …

Whole Genome Sequencing From Snowshoe Hare Fecal Samples, Jessica J. Powell

Graduate Student Theses, Dissertations, & Professional Papers

Genomic analyses can provide powerful insights into important issues in conservation biology, including rapid estimates of overall genetic diversity and related population genetic parameters. Noninvasive DNA sampling from fecal samples is an affordable, efficient, and broadly applicable sampling method that has been used in many targeted genetic analyses. However, the efficacy of whole genome sequencing from fecal samples remains relatively unexplored in most taxa. Here, we present results from two experiments designed to test the quantity and quality of whole genome resequencing data obtained from snowshoe hare (Lepus americanus) fecal pellets. Extensive previous research has used genetic analyses …

A Retrospective Assessment Of Post-Fire Planting In The Us: Aligning Actual And Optimal Planting Sites To Address The Reforestation Gap, Lewis Faller

Graduate Student Theses, Dissertations, & Professional Papers

The natural regeneration processes that maintain semi-arid North American conifer forests are being disrupted. Increasingly, large wildfires burn core areas beyond the typical seed dispersal range of surviving adult trees and even when seeds are present, climate conditions increasingly are unsuitable for conifer recruitment, establishment, and survival. The USDA Forest Service (USFS), mandated to maintain forest cover in response to harvest or disturbance, now faces a planting backlog of over 3.8 million acres. Here, we conduct a retrospective assessment (1986–2023) of USFS post-fire reforestation to evaluate (1) whether historical planting patterns align with the goal to close the national reforestation …

An Assessment Of The California Logging Workforce, Kendra Jean Gerstenberg

Cal Poly Humboldt theses and projects

There is limited literature describing the capacity and capabilities of the logging workforce in California. This study examines the logging workforce in California to quantify the number of logging crews, assess demographic diversity, and evaluate capacity and capabilities. The target population was California Licensed Timber Operators (LTOs) who have the legal right to harvest timber. A survey was developed and distributed to LTOs on the CAL FIRE database. Surveys were also distributed at regional logging conferences or collected by phone. Data were analyzed using Statistical Package for the Social Sciences (SPSS) and emergent coding for follow-up interviews was conducted. There …

An Evaluation Of Fuel Model Accuracy And Multi-Scale Mitigation Strategies In The Wildland-Urban Interface Of Southern Humboldt County, Julia I. Cavalli

Cal Poly Humboldt theses and projects

Strategic placement of fuel treatments is critical for mitigating wildfire risk and reducing potential structure losses in wildland-urban interface (WUI) communities. As wildfire activity accelerates across the western United States, the need to identify high-impact fuel treatment locations grows increasingly urgent. Concurrently, housing development in the WUI is expanding, intensifying the exposure of homes and infrastructure to wildfire threats. In response, many communities are looking to mitigate the likelihood and severity of losses during wildfire events. The success of these efforts depends, in part, on robust data to support strategic placement of effective treatments that reduce fuel availability.

This study …

Place-Based Learning Practices: A Diptych Case Study Of Human And More-Than-Human Relationality At The Tribal And Western Academic Institutional Interface, Karley M. Rojas-Vienneau

Cal Poly Humboldt theses and projects

The ‘Place-Based Learning Practices Project’ is a graduate project under the Native American Studies Department Rou Dalagurr Food Sovereignty Lab and Traditional Ecological Knowledges Institute (FSL). Making contributions at the intersection of Western academia and Indigenous science, it imagines and realizes content, policies, and protocols surrounding two case studies and the larger cal poly humboldt (cph) institution which respect, honor, and uplift Indigenous sovereignty and resurgence in partnership with the Blue Lake Rancheria Tribe and the greater regional tribal community. Encompassing two projects internal and external to the institution, I aim to address the construction of controlled and protective environments …

Can We Help Coast Redwood Adapt To Climate Change? A Provenance Study On Genetic Variation And Climate Transfer Distance, Aidan J. Murphy

Cal Poly Humboldt theses and projects

The climate is changing more rapidly than many species can adapt or migrate. Coast redwood (Sequoia sempervirens) is a unique, long-lived conifer and remains California’s most valuable and economically important timber species. The species is threatened in its natural range due to anthropogenic climate change and human activity. Redwood favors asexual reproduction which restricts its ability to migrate naturally. The consequences of asexual reproduction when faced with a rapidly changing climate may make some form of assisted migration necessary for long-lived organisms like redwood.

This study evaluates drivers of variation in redwood growth and the influence of climate …

Environmental And Spatial Drivers Of Quillback Rockfish (Sebastes Maliger) Growth In The Northeast Pacific Ocean From California To Alaska, Claire E. Stuart

Cal Poly Humboldt theses and projects

Quillback rockfish (Sebastes maliger) are a nearshore fishery species found across the Northeast Pacific Ocean, but recent stock assessments have identified a research gap for biological growth parameters, particularly for the southern end of their range. Age-length data compiled from California to Alaska (n=34,396) was used to generate extended von Bertalanffy models with spatial, biological, and environmental covariates, specifically region, sex, depth, and an upwelling index. The objectives of this study were to explore how 1) spatial and 2) environmental covariates affect model parameters L_∞, k, and t₀. Four total models were developed: …

Turbo Fladry Fencing To Mitigate Short-Term Agricultural Damage Caused By Wild Pigs, Michael P. Glow, Jesse A. Tussing, Johnathan G. Walls, Robert B. Hyle, Joseph M. Halseth, Nathan P. Snow, Kurt C. Vercauteren

Human–Wildlife Interactions

Wild pigs (Sus scrofa) are a destructive invasive species that damage agricultural crops in many regions of the world. Lethal techniques to reduce populations are most often used to mitigate damage, but additional techniques are also needed in conjunction with lethal tools to protect resources in some settings (e.g., where lethal control is not practical or possible to achieve population elimination). While additional tools such as deterrents or temporary fencing may provide short-term relief, few effective options are currently available because habituation by wild pigs often reduces long-term effectiveness. Turbo fladry, a type of electric fence, is an …

Effect Of Implementing An Educational Program About Post Kidney Transplant Care On Critical Care Nurses' Knowledge, Marwa Abdo, Asmaa Ibrahim Aboseda

Nursing

Background: Critical care nurses (CCNs) play a pivotal role in post-kidney transplant care, necessitating a comprehensive understanding of transplantation procedures, complications, and patient management. So, any knowledge gaps among CCNs may impact the quality of care provide to kidney transplant program. Aim: This study aimed to assess the effect of implementing an educational program about post-kidney transplant care on critical care nurses’ knowledge. Methods: A quasi-experimental study was conducted among 50 critical care nurses. A structured educational program was implemented, and nurses’ knowledge was assessed pre- program, post- program, and three months follow-up. Data was collected using a kidney transplantation …