Life Sciences Commons^™

Leucine Catabolism Is Associated With Longevity In Female Eastern Lubber Grasshoppers, Kerri R. Conklin

UNF Graduate Theses and Dissertations

Background & Aims: Dietary isoleucine restriction can improve metabolic health and increase lifespan. It has been hypothesized that shifts in branched-chain amino acid catabolism drives this longevity effect. Impaired branched-chain amino acid catabolism is linked to several age-related diseases. We investigated whether dietary isoleucine restriction increases leucine catabolism and associates with longevity and full reproduction.

Methods: In two experiments, adult female Eastern Lubber grasshoppers (Romalea microptera) were assigned to either a high-quality diet (Balanced ile), or diets with varying isoleucine content (Moderate ile-R and Severe ile-R). In Experiment 1, we used a low-energy (Low Lettuce) group as a positive …

Long-Term Abundance Estimates Of A Northeast Florida Estuarine Dolphin Community: Evaluating The Impacts Of The 2013–2015 Cetacean Morbillivirus Unusual Mortality Event, Allison L. Wilkins

UNF Graduate Theses and Dissertations

Tamanend's bottlenose dolphins (Tursiops erebennus) in the St. Johns River (SJR), Jacksonville, FL, are subjected to substantial anthropogenic stressors (e.g., vessel traffic, dredging, fisheries interactions) and were heavily impacted by the 2013-2015 Mid-Atlantic cetacean morbillivirus unusual mortality event (UME). High prevalence of skin lesions and frequent sightings of emaciated dolphins suggest declining health and viability of the SJR dolphin community. Sighting data from Jul. 2011 to Oct. 2019 provided the rare opportunity to investigate long-term changes in dolphin abundance surrounding the UME. This study produced the first dolphin abundance estimate within the Jacksonville Estuarine System stock since 1997, …

Growth, Survival, And Herbivore Browsing Preferences Of Seedlings Planted In Black Ash Stands Of Northern Michigan And Wisconsin, Seth W. Davenport

Dissertations, Master's Theses and Master's Reports

To mitigate the cascading ecosystem impacts of widespread black ash (Fraxinus nigra) mortality due to the invasive emerald ash borer (Agrilus planipennis), forested wetlands can be underplanted with seedlings of alternative species that later repopulate the vacated canopy. This study examined the survival and growth, factors influencing performance, and herbivore browsing preferences of seven non-ash species planted in northern Michigan and Wisconsin. The best performing species were river birch (Betula nigra), silver maple (Acer saccharinum), and swamp white oak (Quercus bicolor). The worst performing species was black spruce (Picea …

Microbial Hydrocarbon Degradation And Carbon Cycling In Marine And Freshwater Sediments: A Comparative Metagenomic Analysis, Yogita M. Warkhade

Dissertations, Master's Theses and Master's Reports

Microbes are essential in keeping our environment balanced, especially by fixing carbon dioxide and breaking down hydrocarbons in aquatic sediments. This thesis explores how microbial communities perform these tasks in different sediment environments, including marine areas (Caspian Sea and Mediterranean Sea) and freshwater ecosystems (Great Lakes). The first part of this thesis reviews current knowledge about how microbes degrade hydrocarbons. It highlights the importance of different pathways microbes use depending on oxygen availability. The second part provides a detailed study of the microbial communities found in marine sediments from the Caspian Sea and Mediterranean Sea, showing that microbes in these …

Identifying Patterns In Avian Plasma Metabolites For Use In Comparing Between-Site Differences In Habitat Quality, Katherine A. Brouwer

Dissertations, Master's Theses and Master's Reports

Habitat loss and degradation are especially important considerations for migratory songbirds, since they depend on a variety of distinct habitats within different life phases (such as breeding, wintering, and migration) that are widely dispersed across a spatial scale. Additionally, abundance of migratory songbirds has been in severe decline, making habitat maintenance and recovery of particular interest as a research avenue. Identifying high quality habitats across a bird’s annual range is therefore of increasing importance and represents fundamental information for guiding management decision making. Free-floating metabolites found in blood are frequently used to determine short-term mass changes in birds and have …

Dam It All: A Multi-Scalar Investigation Into The Ecological Role And Function Of Beaver Dams, Kenneth Larsen

Dissertations, Master's Theses and Master's Reports

The central theme of this dissertation is ecological scaling, which examines how small, localized features, such as beaver ponds, contribute to large-scale watershed processes and how different modeling approaches at various scales reveal distinct insights. Through a combination of probabilistic modeling and high-resolution empirical research, this work demonstrates that small ponded systems, particularly those created by beavers (Castor canadensis), serve as critical biogeochemical control points, whose contributions to sediment and nutrient dynamics have been historically underestimated.

In Chapter 1, I contextualize this research within the broader fields of freshwater ecology, watershed modeling, and ecological restoration. I introduce the …

Risk Of Oak Wilt Expanding Northward: Examining Nitidulidae Vector Communities And Host Phenology Beyond The Current Disease Range, Kathleen E. Bershing

Dissertations, Master's Theses and Master's Reports

Oak wilt is a fatal fungal pathogen to oak trees, caused by the fungus Bretziella fagacearum. This fungus targets oak species (Quercus spp.), where members of the red oak group (sect. Lobatae) are at greatest risk of mortality. Oak wilt is widespread throughout the eastern United States, currently present in 24 states. Recently in 2023, oak wilt was detected in trees for the first time in Canada. Although removed from the locations of the first Canadian detections, there is continual concern that the range of oak wilt is at risk for expansion northward. This is further evident …

Fine Root And Ectomycorrhizal Functional Traits Of Quercus Rubra Populations From Across A Latitudinal Gradient, Emma L. Shedd

Dissertations, Master's Theses and Master's Reports

Forests are increasingly considered for their carbon sequestration value, but their ability to store carbon is dependent on a close balance between carbon fluxes into and out of ecosystems. Nutrient uptake of roots and associated symbiotic communities results in respiratory carbon release, which is projected to increase with warming and represents a substantial uncertainty in earth system modeling. Traits that are functionally related to nutrient uptake can be used to estimate carbon fluxes, but our understanding of the trade-offs that govern root, and especially fungal, traits is limited. Fine roots in surface soils are responsible for the bulk of plant …

Investigating Dimensions Of Social Vulnerability To Wildfire: A Case Study Of Western Montana, Ella Brodowski

Dissertations, Master's Theses and Master's Reports

Communities across the US are facing increased wildfire risks due in part to historic fire suppression efforts, a warming climate, and an influx of people residing in wildland urban interface (WUI) landscapes. Because of these increasing risks, there have been growing concerns about the social factors that can increase individual and community vulnerability to wildfires. This research adds to the discussion of social vulnerability by examining how people living in a geographic area with heightened wildfire risk think about the ways in which people can be more or less vulnerable to wildfires. Using semi-structured interviews, round table discussions, and field …

Relict Ponderosa Pine Mortality And Fuels Study In The Bob Marshall Wilderness, Montana, Usa, Laura K. Schimmel

Dissertations, Master's Theses and Master's Reports

Many forests have historically experienced mixed-severity fire regimes that were disrupted during the 20th century due to fire exclusion policy. A stand of relict Pinus ponderosa in the Bob Marshall Wilderness Complex that burned in 2003, 2011, and 2018 provides a unique case study for investigating the effects of returned fire to the landscape. Many of the trees have fire scars or Indigenous bark-peeling scars, preserving valuable ecological and anthropological history. We sought to determine whether scarred trees were more susceptible to fire damage, if larger trees had greater fire resilience than smaller trees, and if fuel loads have changed …

Sugar Maple (Acer Saccharum Marsh.) Tree-Ring Growth And Carbon Stable Isotope Responses To Nitrogen And Climate, Libbie Ring

Dissertations, Master's Theses and Master's Reports

This dendrochronological and stable carbon isotope study used tree rings from sugar maple (Acer Saccharum Marsh.) collected at long-term nitrogen (N) amended sites throughout Michigan to understand N amendment and deposition, climate, and growth relationships. Climate responses varied by site, however, we found importance in grouping sites by “productivity” which is related to inherent N and soil nutrients. Our results did not detect an overall effect of N amendments on growth during the treatment period. However, data shows N amendments benefiting larger diameter trees, while smaller diameter trees responded more positively without amendments, especially on more productive sites. Results …

Computational Tools For Protein Classification In Metagenomes, Fawad Ullah

Dissertations, Master's Theses and Master's Reports

Advances in genomic sequencing have dramatically increased the amount and the speed at which genomic data is being generated. These technological advances have enabled the ability to profile the genetic information of organisms and communities at unprecedented scales. Many methods have been developed to identify and classify genes within these datasets. However, many generic pipelines for gene annotation struggle to accurately predict specific protein classes that may not be represented in their databases. Two major challenges exist for classification of specific protein classes in metagenomic databases. The first is the fact that many metagenomic assemblies are highly fragmented with many …

Review Of Applications Of Deep Learning In Veterinary Diagnostics And Animal Health, Sam Xiao, Navneet K. Dhand, Zhiyong Wang, Kun Hu, Peter C. Thomson, John K. House, Mehar S. Khatkar

Research outputs 2022 to 2026

Deep learning (DL), a subfield of artificial intelligence (AI), involves the development of algorithms and models that simulate the problem-solving capabilities of the human mind. Sophisticated AI technology has garnered significant attention in recent years in the domain of veterinary medicine. This review provides a comprehensive overview of the research dedicated to leveraging DL for diagnostic purposes within veterinary medicine. Our systematic review approach followed PRISMA guidelines, focusing on the intersection of DL and veterinary medicine, and identified 422 relevant research articles. After exporting titles and abstracts for screening, we narrowed our selection to 39 primary research articles directly applying …

Population Genomics In Posidonia Sinuosa, John W. Whale, Chanelle L. Webster, Nicole E. Said, Anjke Frouws, David L. Field, Elizabeth A. Sinclair, Kathryn M. Mcmahon

Reports accepted as research outputs

Executive Summary: This study focused on understanding genetic diversity and connectivity in the Posidonia sinuosa seagrass populations along the west coast of Western Australia, as part of Project 2.2 ‘Building Resilience and Future Proofing Seagrass Meadows’. Seagrass populations were sampled across the latitudinal gradient from Geraldton (northern range edge) to Geographe Bay (southernmost populations on the west coast) between May and December 2022. Sampling was clustered in three geographic areas (northern, central, southern) and included long term seagrass monitoring sites, with greater intensity of sampling conducted within the Cockburn Sound area at a range of depths (1.2 - 11.8 m). …

Addressing Food Security In Cameroon, Stacy A. Adams, Ruth Abunaw Besong

Department of Agronomy and Horticulture: Faculty Publications

Cameroon Africa has experience a period of nearly a decade of unrest as militants fight for independence for two Anglophone regions within a predominantly Francophone country. The English-speaking minority have felt aggrieved for continued erosion of rights by the central government. Protests have rapidly spread since 2016, causing closure of schools, businesses, and medical facilities. People have lost homes and been displaced, negatively affecting food production and crop availability. The United States Department of State leads an effort of diplomacy beyond emergency food relief through the Mandela Washington Fellowship that connects American professionals to innovative and impactful young African leaders. …

Exosomes And Encapsulated Exomirs In Breast Cancer: Theragnostic Applications And Clinical Implications, Muhammad Imran Sajid, Shafia Bukhari, Hamid Ilyas, Rubina Malik, Minahil Fatima, Rakesh Kumar Tiwari, Surya M. Nauli, Khawaja Husnain Haider

Pharmacy Faculty Books and Book Chapters

Exosomes, released by cells, are small vesicles that have emerged as critical theranostic tools in breast cancer due to their unique ability to transport diverse biomolecules such as proteins, lipids, and RNAs, including microRNAs (ExomiRs). These vesicles are critical in modulating the tumor microenvironment, driving processes like cancer proliferation, invasion, metastasis, and drug resistance. Exosomal microRNAs such as ExomiR-21, ExomiR-1246, and ExomiR-155, with their profound influence on the gene expressions in the recipient cells, are the unsung heroes in tumor progression and immune modulation. This chapter delves into exosome's dual diagnostic and therapeutic potential in breast cancer. It highlights their …

Characterization Of The Overexpression Of Reca Homologs Rad51 And Dmc1 In Tetrahymena Thermophila, Jianna M. Cox

Graduate Theses/Dissertations

RecA homologs, Dmc1 and Rad51, work to repair DNA double-strand breaks (DSBs) within the cell through the recombination of homologous sections of DNA. Dmc1 works to repair programmed DSBs through meiotic recombination, while Rad51 functions to repair both meiotic and non-meiotic DSBs, the latter repaired through the process of homologous recombination repair (HHR). Chemotherapeutics, exogenous agents, work to form DSBs in cancer cells, attempting to inhibit the cell’s growth. A hyper recombinant phenotype is often seen in cancer cells due to the overexpression of RAD51, leading to drug resistance, the persistence of cancers, and an overall poor patient outcome. …

Research On Biosecurity Intelligence Work, Ting Zhang, Hui Li

Journal of Scientific Information Research

[Purpose/significance]Biosecurity intelligence plays an important role in promoting the development of biomedication industry, and it will contribute to the in-depth development in this field by sorting out the research issues of Biosecurity intelligence. [Method/process]Firstly, the concept and classification of biosecurity intelligence are elucidated. Following this, from the foundational theories of intelligence studies and biosecurity science, the application of these theories in the work of biosecurity intelligence is analyzed. Subsequently, an overview is provided of research on biosecurity intelligence work geared towards biosecurity governance within China, alongside which the challenges faced by such work in our country and corresponding strategies are …

Butyrate Attenuates High-Fat Diet Induced Glomerulopathy Through Gpr43-Sirt3 Pathway, Ying Shi, Lin Xing, Ruoyi Zheng, Xin Luo, Fangzhi Yue, Xingwei Xiang, Anqi Qiu, Junyan Xie, Ryan D. Russell, Dongmei Zhang

Health & Human Performance Faculty Publications

The incidence of obesity related glomerulopathy (ORG) is rising worldwide with very limited treatment methods. Paralleled with the gut-kidney axis theory, beneficial effects of butyrate, one of short-chain fatty acids produced by gut microbiota, on metabolism and certain kidney diseases have gained growing attention. However, the effects of butyrate on ORG and its underlying mechanism are largely unexplored. In this study, a mice model of ORG was established with high-fat diet (HFD) feeding for 16 weeks, and sodium butyrate treatment was initiated at the 8th week. Podocytes injury, oxidative stress, and mitochondria function were evaluated in mice kidney and validated …

No Detected Signal Of The 2022 Epizootic From Multiannual Diadema Antillarum Settlement Data In The Florida Keys, Jason Albrecht

Theses, Dissertations and Culminating Projects

The sea urchin Diadema antillarum is a key coral reef grazer that remains functionally extinct on many Caribbean reefs following a mass mortality event in 1983–84. In 2022, another widespread mortality event, likely caused by a scuticociliate parasite, again decimated D. antillarum at reefs across the Caribbean. Understanding the population-level impacts of this recent epizootic will be important for coral reef conservation efforts. This study examines multi-year larval settlement data from the Florida Keys to determine if the 2022 mortality event reduced larval settlement. Larval settlement was assessed monthly at three long-term monitoring sites (Delta Shoal, Tennessee Reef, and Pickles …

Die Wirkliche Gefahr Liegt In Der Erosion Der Autonomie: Ein E-Mail-Interview Über Kognitive Freiheit Und Die Problematische Nutzung Neuronaler Daten, Nita Farahany, James Kennaway, Bernd Bösel

Faculty Scholarship

In this interview, James Kennaway and Bernd Bösel talk to Nita Farahany about significant themes related to the idea of mind control, as discussed in her book "The Battle for Your Brain" (2023). The book outlines the risks that neurotechnology poses to "cognitive freedom". EEG and EMG data are increasingly used in consumer products, raising concerns about potential misuse. Companies and governments could exploit cognitive biometric data for manipulation or control. Farahany calls for clear legal protections and highlights differences between U.S. and European regulations. She warns of neurotechnological warfare and advocates for global bans. While full mind control remains …

Minimizing Cpu Utilization For Job Scheduling Problems By The Advanced Round Robin Method: A Pragmatic Perspective, Haribhau R Bhapkar, Pankaj R Chandre, Parikshit Mahalle

ASEAN Journal on Science and Technology for Development

CPU scheduling issues include minimizing waiting time for processes, ensuring fairness in resource allocation, and optimizing throughput. Balancing these objectives can be challenging, as improving one aspect may negatively impact another, making it essential to design efficient scheduling algorithms. This work presents an innovative approach to enhance CPU utilization through the development of a Result-Based Round Robin Scheduling Algorithm. Traditional Round Robin Scheduling methods often face challenges in efficiently allocating CPU time, leading to suboptimal system performance. In response to these limitations, the proposed method introduces a result-oriented strategy that dynamically adjusts time quantum allocations based on the execution progress …

Distance Metric Learning Techniques For The Performance Improvement Of Ml-Knn And Ranking-Svm-Based Multi-Label Pattern Classification, Shajee Mohan B. S., Sneha S Mohan

ASEAN Journal on Science and Technology for Development

A multi-label pattern classification system tries to predict the set of class labels of a test example by learning from the training examples with the relevant label sets. Classification that involve datasets having multiple labels found immense of applications in pattern analysis tasks involving image, music and video. A test sample can be labeled to indicate different objects, people, music categories or concepts. Classification problems involving data having multiple labels, have to consider training dataset associated with variety of labels. Multi-label extensions of popular algorithms, kNN and Support Vector Machine (SVM) called Multi-label kNN (ML-kNN) and Ranking-SVM are commonly used …

Solid Waste Management Strategies In Coastal Areas Affected By Seawater Flood Disaster, Adib Khoirul Anas, Maryono Maryono, Hartuti Purnaweni

ASEAN Journal on Science and Technology for Development

Solid waste in areas affected by seawater floods must be handled specifically because people often dispose of solid waste on flooded land. This research aims to identify the performance of the community to manage solid waste and solid waste management strategy, solid waste measurement using SNI method 19-3964-1994. Analysis of land affected by seawater floods shows that 12 villages are flooded. Communities in coastal areas are not optimal in managing solid waste because the government has never given directions to manage solid waste in a good way, the facilities and marketing are inadequate so that solid waste is often not …

Unwritten Rules And Oral Transmission In Architectural Proportion Systems: Case Study Of Bubungan Tinggi House, Huzairin. Muhammad Deddy, Dila Nadya Andini, Rudi Hartono, Anna Oktaviana, Dahliani Dahliani

ASEAN Journal on Science and Technology for Development

The proportional systems in vernacular architecture often exist without formal written codification, raising questions about their transmission across generations. Bubungan Tinggi House which is a replica of the Banjar Kingdom palace was built by Banjarese merchants and aristocrats from the 16th to the 19th centuries, showing a uniform aesthetic quality, which indicates a regularity in the proportions of its form. However, no historical written manuals detailing these proportions are known to exist. To prove the existence of regularity in the Bubungan Tinggi House proportion system, research was conducted by taking 7 Bubungan Tinggi House samples spread across South Kalimantan province, …

Endocrine Responses To Two Distinct Foraging Contexts In The Bonobo (Pan Paniscus), Lauren Mitchell

Master's Theses

In gregarious animals, a social structure characterized by female dominance is relatively rare. However, bonobos (Pan paniscus), one of the two species most closely related to humans, are characterized by partial female dominance, with females forming close social bonds. In contrast, chimpanzees (Pan troglodytes), a close relative of the bonobo, are characterized by strong male-male bonding and social dominance with female chimpanzees lacking close social bonds. There is a lack of consensus concerning the reasons for these behavioral differences in Pan, specifically, the physiological processes responsible for female dominance in bonobos. The role of hormones …

Tricolored Bat (Perimyotis Subflavus) Population Genetic Structure In The Southeastern United States, Laura Henderson

Master's Theses

Tricolored bats (Perimyotis subflavus) have experienced substantial population losses from white-nose syndrome (WNS), a disease caused by the pathogenic fungus Pseudogymnoascus destructans (Pd) which infects hibernating bats. Determining population genetic structure helps assess genetic diversity and the impacts of wildlife threats to populations. Pre-WNS data shows weak-to-negligible structure and panmictic P. subflavus populations at core portions of their range. However, current genetic data from their southeastern U.S. range is lacking. I sought to determine whether recent genetic data help resolve genetic structure among southeastern populations and assess genetic differences at two stages of impact: post-WNS and …

Effects Of Ionophore And Yeast Addition To The Diet On Starch Digestion And Rumen Andblood Parameters In Sheep With Subacute Rumen Acidosis, Şevket Evci̇, Mehmet Aki̇f Karsli, Mehmet Demi̇rci̇, Gökhan Şen

Turkish Journal of Veterinary & Animal Sciences

This study aimed to investigate the prevention of acidosis in ruminants, which causes yield and financial losses, and toevaluate the effects of feed additives on starch digestion. Four male Bafra yearling lambs with cannulated rumens were used in a 60-daystudy. Each lamb underwent 10 days of adaptation to a ration and 5 days of sampling for four different rations including a control ration(CR), monensin ration (MR), Saccharomyces cerevisiae ration (SR), and a ration with the combination of monensin and Saccharomycescerevisiae (MSR). The experiment followed a 4 × 4 Latin-square design. Dry matter intake and digestion rates were recorded as 2404 …

Characterization Of The Biofilm-Forming Ability And Certain Virulence Characters Ofaeromonas Spp. Isolates From Rainbow Trout, Türker Çelebi̇, Ertan Emek Onuk, Esra Demi̇rbaş, Gökçen Di̇nç

Turkish Journal of Veterinary & Animal Sciences

Aeromonas spp., commonly found in the aquatic environment, cause infections in both fish and humans. Their pathogenicitydepends on various virulence factors and ability to form biofilm. The current study aimed to determine the biofilm-forming capabilitiesand certain virulence characteristics of 25 Aeromonas spp. isolates obtained from rainbow trout in Türkiye. The biofilm-forming abilitiesof isolates were investigated comparatively using Congo red agar (CRA), the tube method (TM), and tissue culture plates (TCPs).Potential virulence factors, including hemolytic activity, gelatinase production, serine protease activity, DNase activity, and motility,were evaluated using phenotypic tests. Additionally, the distribution of four known virulence genes, namely aerA, exu, fla, …

Cardiac Timing Effects On Response Speed Are Modulated By Blood Pressure But Not Heart Rate Variability In Healthy Young Adults, Xiao Yang, Catalina Roldan, Michael Gazzanigo, Yasmine Nabulsi, Fang Fang

Research and Infrastructure Service Enterprise (RISE) Faculty Publications

Cardiac timing effects reflect the dynamic interplay between interoceptive and exteroceptive processes. Human information processing tends to be facilitated during cardiac diastole and inhibited during systole, reflecting autonomic regulation and the neuromodulation by baroreceptor afferents. Thus, blood pressure (BP) and vagally-mediated heart rate variability (vmHRV) are potential modulators of those effects. Additionally, cognitive control appears to play a critical role in the processes. However, whether cardiac timing effects are influenced by those factors remains unclear. The present study aimed to clarify these relationships. Fifty-one healthy young adults completed three experimental sessions to assess BP, short-term HRV, and cardiac timing effects. …