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Articles 16081 - 16110 of 255753
Full-Text Articles in Life Sciences
Microbiome Metabolic Capacity Is Buffered Against Phylotype Losses By Functional Redundancy, Kayla Cross, Noelle Beckman, Benjamin Jahnes, Zakee L. Sabree
Microbiome Metabolic Capacity Is Buffered Against Phylotype Losses By Functional Redundancy, Kayla Cross, Noelle Beckman, Benjamin Jahnes, Zakee L. Sabree
Biology Faculty Publications
Many animals contain a species-rich and diverse gut microbiota that likely contributes to several host-supportive services that include diet processing and nutrient provisioning. Loss of microbiome taxa and their associated metabolic functions as result of perturbations may result in loss of microbiome-level services and reduction of metabolic capacity. If metabolic functions are shared by multiple taxa (i.e., functional redundancy), including deeply divergent lineages, then the impact of taxon/function losses may be dampened. We examined to what degree alterations in phylotype diversity impact microbiome-level metabolic capacity. Feeding two nutritionally imbalanced diets to omnivorous Periplaneta americana over 8 weeks reduced the diversity …
Enhancing Immunotherapy Efficacy With Synergistic Low-Dose Radiation In Metastatic Melanoma: Current Insights And Prospects, Zahid Rafiq, Mingyo Kang, Hampartsoum B Barsoumian, Gohar S Manzar, Yun Hu, Carola Leuschner, Ailing Huang, Fatemeh Masrorpour, Weiqin Lu, Nahum Puebla-Osorio, James W Welsh
Enhancing Immunotherapy Efficacy With Synergistic Low-Dose Radiation In Metastatic Melanoma: Current Insights And Prospects, Zahid Rafiq, Mingyo Kang, Hampartsoum B Barsoumian, Gohar S Manzar, Yun Hu, Carola Leuschner, Ailing Huang, Fatemeh Masrorpour, Weiqin Lu, Nahum Puebla-Osorio, James W Welsh
Faculty, Staff and Student Publications
Recent advances in oncology research have highlighted the promising synergy between low-dose radiation therapy (LDRT) and immunotherapies, with growing evidence highlighting the unique benefits of the combination. LDRT has emerged as a potent tool for stimulating the immune system, triggering systemic antitumor effects by remodeling the tumor microenvironment. Notably, LDRT demonstrates remarkable efficacy even in challenging metastatic sites such as the liver (uveal) and brain (cutaneous), particularly in advanced melanoma stages. The increasing interest in utilizing LDRT for secondary metastatic sites of uveal, mucosal, or cutaneous melanomas underscores its potential efficacy in combination with various immunotherapies. This comprehensive review traverses …
Identification Of Diverse Bacteriophages Associated With Bees And Hoverflies, Rohan A. Bandoo, Simona Kraberger, Cahit Ozturk, Michael C. Lund, Qiyun Zhu, Chelsea N. Cook, Brian Smith, Arvind Varsani
Identification Of Diverse Bacteriophages Associated With Bees And Hoverflies, Rohan A. Bandoo, Simona Kraberger, Cahit Ozturk, Michael C. Lund, Qiyun Zhu, Chelsea N. Cook, Brian Smith, Arvind Varsani
Biological Sciences Faculty Research and Publications
Bacteriophages are the most numerous, ubiquitous, and diverse biological entities on the planet. Prior studies have identified bacteriophages associated with pathogenic and commensal microbiota of honeybees. In this study we expand on what is known about bacteriophages from the lineages Caudoviricetes, Inoviridae, and Microviridae, which are associated with honeybees (Apidae, Apis mellifera), solitary bees of the genus Nomia (Halictidae, Nomia), and hoverflies (Syrphidae). The complete genomes of seven caudoviruses, seven inoviruses, and 288 microviruses were assembled from honeybees (n = 286) and hoverflies in Arizona (n = 2). We used bacterial host predictive …
Plasmids Encode And Can Mobilize Onion Pathogenicity In Pantoea Agglomerans, Gi Yoon Shin, Jo Ann Asselin, Amy Smith, Brenna Aegerter, Teresa Coutinho, Mei Zhao, Bhabesh Dutta, Jennie Mazzone, Ram Neupane, Beth Gugino, Christy Hoepting, Manzeal Khanal, Subas Malla, Claudia Nischwitz, Jaspreet Sidhu, Antoinette Machado Burke, Jane Davey, Mark Uchanski, Michael L. Derie, Lindsey J. Du Toit, Stephen Stresow-Cortez, Jean M. Bonasera, Paul Stodghill, Brian Kvitko
Plasmids Encode And Can Mobilize Onion Pathogenicity In Pantoea Agglomerans, Gi Yoon Shin, Jo Ann Asselin, Amy Smith, Brenna Aegerter, Teresa Coutinho, Mei Zhao, Bhabesh Dutta, Jennie Mazzone, Ram Neupane, Beth Gugino, Christy Hoepting, Manzeal Khanal, Subas Malla, Claudia Nischwitz, Jaspreet Sidhu, Antoinette Machado Burke, Jane Davey, Mark Uchanski, Michael L. Derie, Lindsey J. Du Toit, Stephen Stresow-Cortez, Jean M. Bonasera, Paul Stodghill, Brian Kvitko
Biology Faculty Publications
Pantoea agglomerans is one of four Pantoea species reported in the USA to cause bacterial rot of onion bulbs. However, not all P. agglomerans strains are pathogenic to onion. We characterized onion-associated strains of P. agglomerans to elucidate the genetic and genomic signatures of onion-pathogenic P. agglomerans. We collected > 300 P. agglomerans strains associated with symptomatic onion plants and bulbs from public culture collections, research laboratories, and a multi-year survey in 11 states in the USA. Combining the 87 genome assemblies with 100 high-quality, public P. agglomerans genome assemblies we identified two well-supported P. agglomerans phylogroups. Strains causing severe …
An Effective Secure Multi-Objective Task Scheduling Algorithm In Multi-Cloud Environment, V K S K Sai Vadapalli, Ramesh Babu Gurujukota, Phaneendra Varma Chintalapati, Satyanarayana Murty, G. Sai Chaitanya Kumar, Satish Kumar Kode
An Effective Secure Multi-Objective Task Scheduling Algorithm In Multi-Cloud Environment, V K S K Sai Vadapalli, Ramesh Babu Gurujukota, Phaneendra Varma Chintalapati, Satyanarayana Murty, G. Sai Chaitanya Kumar, Satish Kumar Kode
Karbala International Journal of Modern Science
In cloud environments, task scheduling is essential for improving performance. Nevertheless, the existence of several heterogeneous clouds makes scheduling extremely difficult, requiring increasingly advanced algorithms to manage these environments' diversity and dynamic nature. To solve this, numerous authors have created a variety of task schedulers utilizing heuristic and metaheuristic techniques. Nevertheless, it remains dynamic and challenging because task scheduling is an NP-hard issue. Furthermore, in many complicated situations, it is still problematic to guarantee security throughout the task’s execution. Therefore, this paper introduces a multi-objective security-aware task scheduler using the Crayfish Mud Ring Optimization Algorithm for a multi-cloud environment. This …
Animal Bones From ‘En Marzev (Pp. 23–25), Shlomo Hellwing, Nurit Feig
Animal Bones From ‘En Marzev (Pp. 23–25), Shlomo Hellwing, Nurit Feig
'Atiqot
The bones retrieved from the Early Islamic building at ‘En Marzev were in a good state of preservation. The most abundant animal in the sample is the gazelle, followed by the horse, with a remarkably smaller amount of domesticated animals, such as sheep, goat and cattle. It seems that gazelles formed a main dietary component at this settlement, indicating that hunting played an important role there.
A Lead Weight-Like Object From ‘En Marzev (Pp. 21–22), Lionel Holland
A Lead Weight-Like Object From ‘En Marzev (Pp. 21–22), Lionel Holland
'Atiqot
The lead object found in the excavations at ‘En Marzev is roughly cylindrical, with a flat top and bottom. It has a semicircular, copper or bronze hoop on top. The purpose of this object is hard to ascertain as its weight does not relate to any ancient Eastern Mediterranean weight system, and its form does not correspond to the usual form of ancient weights. It may have served as a weight for a variety of uses, e.g., on fishing lines and nets, or on looms.
The Coins From Ge’Alya (Pp. 111–112), Robert Kool
The Coins From Ge’Alya (Pp. 111–112), Robert Kool
'Atiqot
Eight coins were unearthed, of which five copper fulus could be identified. All belong to the Mamluk period, and were used in daily transactions.
A Mamluk-Period Settlement And Cemetery At Ge’Alya, Near Yavne (Pp. 69–110), Amir Gorzalczany
A Mamluk-Period Settlement And Cemetery At Ge’Alya, Near Yavne (Pp. 69–110), Amir Gorzalczany
'Atiqot
Excavations east of Moshav Ge’alya uncovered a cemetery and a habitation site dating to the Mamluk period. Within the cemetery, four types of burial tombs, oriented in a general west–east axis with the deceased facing Mecca, were found. These were individual cist burials, which were covered with ceramic vessels that were used in place of covering slabs. The covering vessels belong to three well-known, Mamluk-period ceramic types (mid-thirteenth–early sixteenth centuries CE): bag-shaped jars, water lifting devices (antiliya) and beehive containers. Other finds include meager glass finds, coins, iron horseshoes, square-sectioned iron nails, a bronze arrowhead, jewelry, spatulas, a buckle and …
Glass Finds From The Abbasid–Fatimid Periods On Danny Mass Street, Ramla (Pp. 59–67), Natalya Katsnelson
Glass Finds From The Abbasid–Fatimid Periods On Danny Mass Street, Ramla (Pp. 59–67), Natalya Katsnelson
'Atiqot
The glass finds retrieved from Danny Mass Street, Ramla include common tablewares, luxury vessels and a mosaic-glass eye bead. They form a diagnostic assemblage spanning the late eighth–early eleventh centuries CE. This assemblage provides a new insight into the glass assemblage of the city during the Abbasid and Fatimid periods. The uniformity of fabric within the assemblage suggests that many of the vessels may have been produced in the same workshop.
Archaeozoological Finds From The Abbasid Period, From Danny Mass Street, Ramla (Hebrew, Pp. 129*–131*; English, P. 121), Moshe Sade
'Atiqot
The excavation on Danny Mass Street, Ramla yielded faunal remains dating to the Early Islamic period, comprising domesticated, as well as wild animal bones. Pig bones found in the assemblage probably attest to the existence of a Christian population in the city.
An Early Islamic-Period Structure On Danny Mass Street, Ramla (Hebrew, Pp. 99*–126*; English, Pp. 118–119), Oren Shmueli
An Early Islamic-Period Structure On Danny Mass Street, Ramla (Hebrew, Pp. 99*–126*; English, Pp. 118–119), Oren Shmueli
'Atiqot
A salvage excavation within the boundaries of the ancient city of Ramla revealed four strata. The earliest, Stratum IV, comprised an earthen fill, containing potsherds—including imports from Egypt and China—stone and glass vessels, dating from the mid-eighth to the tenth centuries CE. Stratum III included three architectural phases: fragmentary remains of installations and a wall foundation (Phase IIIc); remains of a large building, which was erected upon three terraces (Phase IIIb); and an ashlar-built, paved circular installation (Phase IIIa). The finds from Stratum III date from the mid-eighth to the eleventh centuries CE, and include potsherds and animal bones. The …
Two Decorated Potsherds From The Islamic Period From Danny Mass Street, Ramla (Hebrew, Pp. 127*–128*; English, P. 120), Nitzan Amitai-Preiss
Two Decorated Potsherds From The Islamic Period From Danny Mass Street, Ramla (Hebrew, Pp. 127*–128*; English, P. 120), Nitzan Amitai-Preiss
'Atiqot
Two decorated potsherds were unearthed: a stamped jar handle depicting a “cross” and part of a flask. The flask bears an Arabic inscription, which was dated, based on comparisons, to the thirteenth–fourteenth centuries CE.
An Early Islamic Installation At Ramla (Pp. 27–39), Oren Shmueli
An Early Islamic Installation At Ramla (Pp. 27–39), Oren Shmueli
'Atiqot
An excavation at the Ramlod Interchange exposed a subterranean circular, plastered installation, with one course of its vaulted roof still extant and two rectangular openings. The fill in the upper part of the installation consisted of animal bones, pottery sherds and fragments of glass vessels, and in the lower part were complete pottery and glass vessels, roof tiles and ceramic tiles mixed with charcoal and animal bones. It seems that the assemblage was discarded into the pit between the second half of the eighth and the first half of the ninth centuries CE. The installation, built on the hill at …
An Umayyad Glass Assemblage From Ramla (Pp. 41–57), Yael Gorin-Rosen
An Umayyad Glass Assemblage From Ramla (Pp. 41–57), Yael Gorin-Rosen
'Atiqot
A homogeneous assemblage of glass vessels was uncovered in the lower part of an installation (cesspit?) during excavations in the vicinity of Ramla. The assemblage included bowls and beakers, bottles, jugs, a jar, an oil lamp and a miniature spouted vessel, whose fabric, quality and workmanship are typical of the Umayyad period. The glass is mostly bluish green or greenish blue, without corrosion and weathering, and with very common, simple decoration. The importance of this glass group lies in its dating to the beginning of the Islamic Era, i.e., the first half of the eighth century CE or very shortly …
The Coins From ‘En ‘Avrona And ‘En Marzev (Pp. 1–2), Donald T. Ariel, Ariel Berman
The Coins From ‘En ‘Avrona And ‘En Marzev (Pp. 1–2), Donald T. Ariel, Ariel Berman
'Atiqot
Ten coins were retrieved from ‘En ‘Avrona, all of bronze; seven of them were identified. Six silver coins and a few coin fragments were found in excavations at ‘En Marzev, all roughly dating from the third quarter of the ninth to the second quarter of the eleventh centuries CE.
Textiles, Cordage And Fleece From ‘En ‘Avrona (Pp. 3–9), Orit Shamir
Textiles, Cordage And Fleece From ‘En ‘Avrona (Pp. 3–9), Orit Shamir
'Atiqot
Fragments of textile, cordage and fleece, in a very poor state of preservation, were retrieved from ‘En ‘Avrona. Most of the material was found in an archaeological context dated to the Early Islamic period (seventh–ninth centuries CE). The textiles are made of wool, linen and cotton; most of the cordage comprises threads made of cotton, wool, goat hair, mixed wool and goat hair fibers or date palm; the fleece fragments are made of wool and goat hair. Most of the textiles were apparently locally made, with the exception of cotton textiles, most likely imported from Yemen or India. The large …
Textiles And Fleece From ‘En Marzev (Pp. 11–19), Orit Shamir
Textiles And Fleece From ‘En Marzev (Pp. 11–19), Orit Shamir
'Atiqot
The well-preserved textiles uncovered at ‘En Marzev are an important contribution to the study of textiles dating from the Early Islamic period (seventh–ninth centuries CE). The textiles, most of which are very simple, are made of wool, goat hair, linen and cotton. The linen textiles provide evidence for short-range import, either from Galilee or the Jordan Valley, while the Z-spun cottons were probably imported from India or Yemen. The most fascinating find is a cotton textile decorated with silk threads wrapped with silver strips. Ten tangles of woolen fibers found at the site might indicate that at least some spinning …
The Glass Finds From ‘En Marzev (Hebrew, Pp. 83*–98*; English, P. 117), Ayala Lester
The Glass Finds From ‘En Marzev (Hebrew, Pp. 83*–98*; English, P. 117), Ayala Lester
'Atiqot
The glass finds from ‘En Marzev, mostly free-blown, were found alongside pottery, steatite vessels, coins and metal artifacts dating to the seventh–eighth centuries CE. The assemblage comprises bowls, bottles, oil lamps, a wineglass and several windowpane fragments. Also found were remains pointing to a local glass production: glass slags; fragments of the walls of a glass furnace; and two fragments of distorted vessels. The glass vessels date from the late Byzantine period, around 650 CE, to the first decades of the Abbasid period, c. 750–780 CE.
Tunnel-Well (Qanat) Systems From The Early Islamic Period In The ‘Arava (With Contributions By Nili Liphschitz And Yoel Wiesel, And Moshe Sharon) (Hebrew, Pp. 1*–81*; English, Pp. 113–116), Yosef Porath
'Atiqot
Qanat systems operated mainly in arid and semi-arid regions to obtain ground water by means of gravitation. This sophisticated technology was identified at three sites in the ‘Arava—‘En ‘Avrona, ‘En Yotvata and ‘En Marzev—and provided water all year round for household and irrigation needs. Excavations at these sites exposed agricultural farms, comprising a qanat system, a reservoir, a cultivated area and rectangular structures. Finds include pottery, stone and glass vessels, metal finds, coins and epigraphical finds, as well as organic material, botanical remains, melanopsis shells and faunal remains, dating to the Early Islamic period (late seventh–ninth centuries CE). This date …
Coins From I‘Billin (Pp. 101–102), Robert Kool
Coins From I‘Billin (Pp. 101–102), Robert Kool
'Atiqot
Six coins were retrieved from the excavations in the village of I‘billin, five of them were identified. Three small module, Late Roman nummi date to the fourth century CE. A small Byzantine-period bronze coin is from the reign of Justinian I (527–565 CE), minted in Alexandria. The latest coin is a Crusader billon denier of Henry I of Lusignan, king of Cyprus (1218–1253 CE).
Coins From The Excavations Near The Triple Gate Of The Temple Mount, Jerusalem (Pp. 97–100), Donald T. Ariel
Coins From The Excavations Near The Triple Gate Of The Temple Mount, Jerusalem (Pp. 97–100), Donald T. Ariel
'Atiqot
Forty-one coins were found in the excavation, 22 of them were identifiable. All of the coins are bronze, except for one, which is silver. The coins range in date from the first to the seventh centuries CE.
Excavations Near The Triple Gate Of The Temple Mount, Jerusalem (Pp. 37–95), Yuval Baruch, Ronny Reich
Excavations Near The Triple Gate Of The Temple Mount, Jerusalem (Pp. 37–95), Yuval Baruch, Ronny Reich
'Atiqot
In the vicinity of the ‘western Hulda Gate’ in the southern wall of the Temple Mount, four areas were excavated. Area A revealed a large miqweh (ritual bath). Area B contained three rock-cut, vaulted rooms supporting the monumental staircase to the Triple Gate. In Area C, south of the vaulted rooms, fills were excavated and a rock-cut surface was exposed. In Area D, the rock-cut ‘Secco Room’ was cleaned. Several architectural fragments, including column drums, a column base, entablature fragments, staircase elements and a fragment of a threshold, were uncovered, many of which originated in Herod’s Royal Stoa. Some of …
The Glass Finds From I‘Billin (Hebrew, Pp. 127*–131*; English Summary, P. 112), Yael Gorin-Rosen
The Glass Finds From I‘Billin (Hebrew, Pp. 127*–131*; English Summary, P. 112), Yael Gorin-Rosen
'Atiqot
The glass finds retrieved from the excavations at I‘billin are mainly of common types dating from the Hellenistic to the Mamluk or early Ottoman periods. Area A yielded 28 diagnostic fragments dating from the Late Roman to the Umayyad periods, 3 bracelets from the Mamluk or early Ottoman period and remains of glass production. A total of 28 glass vessels were found in Area B, dating to the Late Roman–Umayyad periods, as well as a small raw glass chunk. Area C yielded the largest amount of glass vessels (n = 100), dating to the Hellenistic, Byzantine and Abbasid–Fatimid periods. The …
Remains From Iron Age Iib Until The Ottoman Period At I‘Billin (Hebrew, Pp. 91*–126*; English Summary, Pp. 110–111), Rafeh Abu-Raya
Remains From Iron Age Iib Until The Ottoman Period At I‘Billin (Hebrew, Pp. 91*–126*; English Summary, Pp. 110–111), Rafeh Abu-Raya
'Atiqot
Three excavations in the village of I‘billin (Areas A–C) yielded 13 occupation layers, dating from Iron Age IIB to the Ottoman period. The remains from the Early and Middle Roman periods (Strata X–IX) include a ritual bath (miqweh) and an underground hiding complex, indicating that a Jewish settlement existed at the site. The Byzantine period (Stratum VII) is represented by architectural remains, as well as by imported bowls from Phoenicia, Cyprus and North Africa. Of special note is an ashlar engraved with the tree of life, which was found in secondary use in a Mamluk-period floor.
Anthropological Remains From The Cemetery At Qanat El-Ja‘’Ar (Hebrew, Pp. 87*–89*; English Summary, P. 109), Yossi Nagar
Anthropological Remains From The Cemetery At Qanat El-Ja‘’Ar (Hebrew, Pp. 87*–89*; English Summary, P. 109), Yossi Nagar
'Atiqot
Human skeletal remains were found in three burial caves dated to the Intermediate Bronze Age. It was possible to determine the practice of primary burial in a flexed posture and diverse orientation. The skeletal remains represent at least 14 individuals, one of them an infant. It is noteworthy that the burial of several individuals is uncommon during the Intermediate Bronze Age, during which singular burials were the norm.
An Intermediate Bronze Age Cemetery At Qanat El-Ja‘’Ar, Near ‘En Ha-Naziv (Hebrew, Pp. 57*–86*; English Summary, P. 108), Zach Horowitz
An Intermediate Bronze Age Cemetery At Qanat El-Ja‘’Ar, Near ‘En Ha-Naziv (Hebrew, Pp. 57*–86*; English Summary, P. 108), Zach Horowitz
'Atiqot
Excavations at Qanat el-Ja‘’ar revealed four rock-hewn caves dating to the Intermediate Bronze Age. The tombs had a vertical shaft, circular or square, at the bottom of which was a rectangular or trapezoidal passage that led to a burial chamber. A stone blocked the opening between the passage and the tomb chamber. The accompanying burial goods included large quantities of pottery vessels, including unique forms, such as three-nozzled lamps. Most of the pottery vessels were decorated with red paint and applied plastic decoration. Burial goods also included a stone pebble anthropomorphic figurine of a woman, a stone bead and metal …
Remains Of The Wadi Rabah Culture, Early Bronze Age Ib And The Intermediate Bronze Age At ‘En Esur (‘Ein Assawir), Area J (Hebrew, Pp. 23*–43*; English Summary, Pp. 104–106), Eli Yannai
'Atiqot
The excavation at ‘En Esur Area J revealed six strata, the earliest dating to Pottery Neolithic A (Wadi Rabah culture; Stratum VI). Stratum V (Early Bronze Age IB) yielded stone foundations of three buildings: round, rectangular and rhomboid. The round building was a large silo; its upper faces were leveled to bear mud bricks. Within the rectangular building were two flat stones that probably served as bases for wooden pillars. The third, rhombus-shaped building, was built of large, flat fieldstones, and comprised two broad rooms connected by a stepped opening. Bases made of large flat stones were found in the …
An Early Bronze Age Ib–Ii Settlement At Abu Qurinat (Hebrew, Pp. 45*–55*; English Summary, P. 107), Svetlana Talis
An Early Bronze Age Ib–Ii Settlement At Abu Qurinat (Hebrew, Pp. 45*–55*; English Summary, P. 107), Svetlana Talis
'Atiqot
Four structures and two courtyards were exposed at the site. Structure A is rectangular, of the broad-house type; a round, stone-built installation was discovered in its southwestern corner. Large Courtyard F was exposed to the south of Structure A, and in its western end were the remains of elliptical Structure E, probably a silo. Structure B is elliptical; in its floor were a large flat stone (working surface?), two hearths, a mortar and two querns, as well as pottery and flint tools. Rectangular Structure C was paved with a tamped earth floor, containing two hearths, pottery and flint tools. The …
Lod (Newe Yaraq): A Late Roman Pottery Kiln And Pottery Neolithic A (Jericho Ix/Lodian) Remains (With Contributions By Anat Cohen-Weinberger, Tamar Schick, Hamoudi Khalaily And Moshe Sade)(Pp. 1–36), Edwin C.M. Van Den Brink, Catherine Commenge
Lod (Newe Yaraq): A Late Roman Pottery Kiln And Pottery Neolithic A (Jericho Ix/Lodian) Remains (With Contributions By Anat Cohen-Weinberger, Tamar Schick, Hamoudi Khalaily And Moshe Sade)(Pp. 1–36), Edwin C.M. Van Den Brink, Catherine Commenge
'Atiqot
Salvage excavations in the neighborhood of Newe Yaraq, Lod exposed the remains of a Late Roman pottery kiln of the vertical or up-draft type. Seven to eight mud-brick courses of the circular outer wall of the lower chamber (firebox) survived. A round, mud-brick column in its center supported a mud-brick vaulted ceiling that served as the floor of the upper stacking chamber. Associated ceramics, including kiln wasters and slags, were encountered on the fire-chamber’s floor. Most common in the assemblage are sherds belonging to a single type of storage jar, dating to the second–fourth centuries CE. Pottery of the Pottery …