Life Sciences Commons^™

Food Systems Transformation Would Reshape Global Agriculture, Matthew Gibson, Marina Sundiang, Daniel Mason-D’Croz, Thais Diniz Oliveira, Felicitas Beier, Lauren Benavidez-Brouk, Astrid Bos, Maksym Chepeliev, Jonathan Doelman, Shahnila Dunston, Shinichiro Fujimori, Tomoko Hasegawa, Petr Havlik, Jordan Hristov, Jonas Jägermeyr, Marta Kozicka, Marijke Kuiper, Page Kyle, Thijs De Lange, Benjamin Leon Bodirsky, Hermann Lotze-Campen, Hermen Luchtenbelt, David Meng-Chuen Chen, Abhijeet Mishra, Christoph Müller, Gerald Nelson, Amanda Palazzo, Ignacio Perez Dominguez, Alexander Popp, Ronald Sands, Marco Springman, Elke Stehfest, Timothy B. Sulser, Kiyoshi Takahashi, Gianmaria Tassinari, Ferike Thom, Philip Thornton, Kazuaki Tsuchiya, Willem-Jan Van Zeist, Hans Van Meijl, Dominique Van Der Mensbrugghe, Detlef Van Vuuren, Hannah H.E. Van Zanten, Isabelle Weindl, Keith Wiebe, Xin Zhao, Mario Herrero

Department of Agricultural Economics Faculty Publications

Food systems are a major contributor to exceeding planetary boundaries1,2,3 and poor quality diets are a key mortality risk globally4. Projected population and income growth could exacerbate these challenges5. In response, there are calls for transformation towards healthy and sustainable food systems6,7,8. However, the scale and distribution of the impacts of this transformation on agriculture are underexplored. Here we show that, by 2050, the transformation of food systems towards healthy diets (adoption of the EAT–Lancet reference diet), improved productivity and halving of food waste results in a fundamental restructuring of global agriculture, aspects of which break with historical trends. Scenario …

Anoxia Tolerant Dna Replication Is Supported By Atr Kinase In The Annual Killifish Austrofundulus Limnaeus, Riley Roth-Carter, Erin Helms, Joshua C. Saldivar, Jason Podrabsky

Biology Faculty Publications and Presentations

Hypoxia and anoxia suppress cell proliferation due to an increase in replication stress and activation of DNA damage checkpoints. Embryos of the annual killifish Austrofundulus limnaeus tolerate prolonged anoxia, indicating improved genomic stability under oxygen starvation. We investigated the cell cycle regulation of the anoxia tolerant killifish embryonic cell line PSU-AL-WS40NE during anoxia. Live-cell imaging confirms continued proliferation of WS40NE cells for the first 24 h of anoxia with minimal cell death. Fluorescence imaging shows that cells accumulate in G1 after the first day in anoxia with a rapid entry into S phase upon reoxygenation. Pharmacological inhibition shows a reliance …

The Tagmatized Echinoderm, Richard L. Turner

Ocean Engineering and Marine Sciences Faculty Publications

Synopsis Tagmosis is a derived condition of metamerism in annelids, arthropods, and chordates in which groups of adjacent segments are modified to perform specific functions. Examples are the clitellum of earthworms, the carapace of lobsters, and the sacrum of tetrapods, to mention a few. The argument is advanced here that examples of tagmosis are not hard to find among echinoderms, a fourth major group of metameric animals; but the degree of tagmosis is weak in most cases. The first few segments of the axial skeleton are often conjoined as a perioral tagma (e.g., the jaws and other parts of the …

Aquaponics: Farming Fish And Growing Greens For Grades 9–12, Amy M. Shambach,, Rebecca M. Ward, J. Stuart Carlton, Kwamena K. Quagrainie, Tomas O. Höök

Purdue University Press Books

Aquaponics: Farming Fish and Growing Greens for Grades 9–12 teaches STEM-related course material through aquaponics, a water-based agricultural system that combines aquaculture (fish production) and hydroponics (soilless vegetable production) systems. This curriculum is aligned with Next Generation Science Standards and designed to be used with an onsite aquaponics system. Topics include an introduction to aquaculture, fundamental parts of an aquaponics system, the nitrogen cycle, water quality, population dynamics, our modern food system, and more. The ten lessons presented build on each other and are intended to be delivered in sequential order. Alternatively, lessons may also be utilized as stand-alone units …

Euscorpius Emae Sp. N. (Scorpiones: Euscorpiidae), A New Scorpion Species From Montenegro, František Kovařík

Euscorpius

A new species Euscorpius emae sp. n. (Scorpiones: Euscorpiidae) from Montenegro is described, fully complemented with color photographs. E. emae sp. n. is morphologically unique by yellow to orange color, very narrow metasoma and enlarged chela. Pedipalp patella external trichobothria numbers are 4eb, 4eb_a, 2esb, 4em, 4est, 5et, and ventral aspect of patella with 9 trichobothria.

Measuring And Mapping Spatial Distributions Of Soil Lead Concentrations Along Chicago Parkways: West Ridge And Near South Side, Alyssa M. Kain

DePaul Discoveries

Lead is a heavy metal that can be found in every part of our planet. Human activities like the extraction of fossil fuels and degradation of construction materials can release lead into the environment, where it travels and accumulates in places like our soil or water. Despite efforts to lower the use of lead-based materials within the last fifty years, lead contamination remains as a threat to public health and safety. Elevated blood lead levels are known to cause a variety of health issues particularly for young children and pregnant women. This study aims to measure, map, and analyze the …

Healthcare Access And The Persistent Racial Disparities In Low Birth Weight, Zaheda A. Hussain, Yadanar Moe

DePaul Discoveries

Low birth weight (LBW), defined as less than 2,500 grams, is an influential factor contributing to infant mortality in the United States, with significant racial disparities between Black and White mothers. This study analyzed data from 3,054 Black and White mothers collected from the 2018 National Health Interview Survey to explore the association between access to medical care and LBW within different racial groups. The prevalence of LBW was 8.0%. Overall, mothers without a usual place of medical care had, on average, an 18% higher risk of LBW than those with a usual place (OR = 1.18, 95% CI: 0.80–1.74). …

From Landfill To Ladle: Using Open Lca To Calculate Food Diversion Impacts, Samantha Rodriguez

DePaul Discoveries

Food waste contributes to climate change because discarded food results in wasting embodied carbon from producing food. In addition to wasting embodied carbon, food that ends up in landfills emits methane, a powerful greenhouse gas that contributes to climate change. This life cycle assessment quantifies the carbon equivalent footprint of food donations from Costco to the Seton Soup Kitchen using OpenLCA. Two functional units were analyzed in this study. The first functional unit is one meal consisting of 500 grams of donated food that would otherwise be landfilled served to a Seton Soup Kitchen patron during one meal service. The …

Fish Tissue Digestion And Microplastic Polymer Identification Protocol Using Open-Source Ftir Database, Shawn L. Kissinger, Vick-Ariel Privert, Jason Bystriansky, Kyle A. Grice

DePaul Discoveries

Microplastic (MP) contamination in aquatic ecosystems poses significant concerns for environmental and public health, as seafood represents a critical food source worldwide. Despite increasing evidence of MP presence in marine organisms, efficient and accessible detection methods remain essential for characterizing contamination patterns and informing regulatory frameworks. This study extracted MPs from brain, gill, intestine, liver, and muscle tissues of gilt-head bream (Sparus aurata) and European sea bass (Dicentrarchus labrax), two commercially important species from the Gulf of Cádiz, Spain, using a NaOH–HNO₃ chemical digestion protocol. Isolated particles were characterized by Fourier Transform Infrared (FTIR) spectroscopy, with …

Crystal Structural Analysis Of Medieval Human Bones Using Wide-Angle X-Ray Scattering, Selly Altangerel, Leslie Gracia

DePaul Discoveries

Female human second metacarpal (mc2) bones from a medieval cemetery at Wharram Percy, England, were studied using high-energy Wide-Angle X-ray Scattering (WAXS) at beamline 1-ID of the Advanced Photon Source at Argonne National Laboratory. The age-at-death of 33 samples was determined from molar wear and classified into 3 groups:  18-30, 30-50, and 50+ years old.  Rietveld refinements of the WAXS data were performed to obtain lattice parameters of the hexagonal carbonated apatite phase (cAp). Individual fittings for cAp peaks 00.2, 00.4, and 31.0 were performed to obtain their widths and correlate them to collagen retention. For the three samples described …

Clearing The Air: Tracking Spatial And Temporal Pm2.5 Variability Along A Biking Transect In Chicago, Beau R. Rass

DePaul Discoveries

Fine particulate matter (PM₂.₅) poses significant risks to human health and disproportionately affects marginalized communities in urban environments (World Health Organization [WHO], 2021; Tessum et al., 2021). Using low-cost mobile sensors, this study explored spatiotemporal PM₂.₅ concentration patterns along a north–south transect of Halsted Street in Chicago. A 2B Technologies Portable Aerosol Monitor (PAM) mounted on a bicycle was used to continuously record PM₂.₅ concentrations with associated GPS coordinates at approximately two-second intervals during 16 sampling events between 08-12-2025 and 10-05-2025. PM₂.₅ concentrations did not differ significantly among the South Side, West Loop, and North Side regions, contrary to the …

Depaul Discoveries Volume 15 Cover Art, Dina Khdair

DePaul Discoveries

No abstract provided.

Vertebrate Diversity In Cave Systems Of Colombia: An Approach Based On Environmental Dna Metabarcoding Analysis, Rita Daniela Martinelli Marín, Carlos Andres Lasso, Francesco Sauro, Susana Josefina Caballero

International Journal of Speleology

There is currently limited knowledge of the biological communities inhabiting cave ecosystems in South America. This study examines the vertebrate community composition of 21 caves across diverse subterranean ecosystems in Colombia using environmental DNA (eDNA) analysis. Water was collected from water bodies inside caves and subterranean systems in six of the eight speleological regions of Colombia in eight departments. Water was filtered manually through a 0.8 m pore size filter and preserved with Longmire solution. A 170-base pair (bp) fragment of the 12s mitochondrial gene specific for vertebrate identification was amplified by PCR and sequenced by Illumina (metabarcoding). Data corresponding …

Campus Food Recovery: Balancing Sustainability And Student Needs, Scott T. Taylor Jr., Wenhao Zhang, Robin B. Dipietro, Mary Stein, Junehee Kwon

ICHRIE Research Reports

The purpose of this study was to assess the impact of a food recovery program at a large university on food waste reduction and food insecurity mitigation. The primary goal of the food recovery program was two-fold: to help provide ready-to-eat meals for students facing food insecurity and to help the campus food service provider minimize post-production food waste. Thus, food was recovered from multiple dining outlets on a large university campus in the southeast United States. To ensure a valid comparison between 2022-2023 and 2023-2024 academic years, a 3-month period during the spring semesters in 2023 and 2024 was …

What Are Vestigial Structures? Evidence For Evolution Explained, Ryan Bebej

University Faculty Publications and Creative Works

Evolution wasn’t something we talked about very much in my home or church when I was growing up.

Yet somehow, I came to believe that evolution wasn’t compatible with Christian faith. At the time that seemed okay, because I had heard that the evidence for evolution wasn’t very strong anyway.

That all began to change when I started studying biology in college. In different classes, I encountered some of the compelling evidence for evolution and common descent.

Vestigial structures were one of the topics that came up often in biology textbooks about these topics.

Today, biologists point to …

Comparable Outcomes, Divergent Learning Pathways: Comparing Metacognitive Reflection And Practice Problems In Organic Chemistry, Jitendra D. Belani

College of Life Sciences Faculty Papers

Organic Chemistry I presents significant challenges for students, requiring both conceptual understanding and effective study strategies. Two commonly used approaches to support learning are structured practice problems and metacognitive reflection activities; however, these strategies are rarely compared directly within the same course context. In this study, students enrolled in a postbaccalaureate Organic Chemistry I course (n = 31) were randomly assigned to one of two low-stakes interventions: weekly practice problem sets or structured reflection surveys focused on study strategies. Student performance was evaluated using three midterm examinations, a cumulative final exam, and overall course grades, along with measures of participation. …

Unveiling The Diversity Within Salvia Caespitosa Sensu Lato (Lamiaceae): Three New “Hidden” Endemic Species From Türkiye​, Ferhat Celep, Musa Doğan, Gali̇p Akaydin, Ahmet Kahraman, Ersi̇n Karabacak, Ömer Çeçen, Meti̇n Armağan, Chun-Lei Xiang, Bryan T. Drew

Turkish Journal of Botany

Documenting species, particularly those that are threatened or endangered, is fundamental to biodiversity conservation. However, many taxa remain scientifically unrecognized, being either undiscovered or unpublished. While some plants can be easily recognized as new species, other identifications are obscured by morphological, taxonomic, and nomenclatural complexity. Detecting cryptic or “hidden” species is therefore essential to understanding biodiversity and plant evolution. Our revisionary studies on Salvia demonstrate that the morphologically complex Salvia caespitosa is not a single species but instead comprises at least four distinct species, three with narrow distributions. This conclusion is supported by integrative evidence from extensive field studies, herbarium …

A New Species Of The Genus Heracleum From Türkiye: H. Papilionaceum (Apiaceae: Tordyliaea​), Mehmet Sağiroğlu, Mardiya Sabdani̇, Bariş Bani̇, Hayri̇ Duman

Turkish Journal of Botany

A new species, Heracleumpapilionaceum (Apiaceae: Tordylieae), is described and illustrated from the Elmacık Mountains, Bolu Province, northwestern Türkiye. Morphological studies and phylogenetic analyses based on nuclear ribosomal (nr)DNA Internal Transcribed Spacer sequences placed the new species close to H. apiifolium and H. munzurense. Comparative morphological and fruit anatomical data, images, and a distribution map are provided. An International Union for Conservation of Nature Red List assessment is also presented, supporting its classification as Critically Endangered.

Erginia (Asteraceae: Cichorieae: Crepidinae), A New Genus Accommodating Chondrilla Spinosa, An Orphan Species Of Localized Distribution In Southeastern Anatolia, Murat Erdem Güzel, Kami̇l Coşkunçelebi̇, Serdar Makbul, Mutlu Gültepe, Zeynepnur Alemdağ, Norbert Kilian

Turkish Journal of Botany

The new genus Erginia is established to accommodate Chondrilla spinosa, a species of previously uncertain systematic placement, with a highly localized distribution in Southeastern Anatolia (Türkiye) on alpine screes along two mountain ridges. Although there has been general agreement that the species is a member of the subtribe Crepidinae in its wider sense, including the Chondrillinae, its placement in Chondrilla is based on the superficial resemblance of its achene features, which also do not match any other known genus, and no molecular phylogenetic analysis had clarified its sister group. In this study, we produce additional micro- and macromorphological as well …

Integrative Data Inform The Taxonomy Of Salix: A Case Study Of S. Purpurea L. Subsp. Leucodermis Yalt. (Salicaceae) From Türkiye, Peli̇n Acar, Yasi̇n Kaya, Dudu Özlem Mavi̇ İdman, Irina V. Belyaeva

Turkish Journal of Botany

The study of endemic species provides valuable perspectives on evolutionary history and future targets for their conservation. Salix purpurea L. subsp. leucodermis Yalt., which is endemic to Sandras Mountain in Türkiye, was analysed using morphological, anatomical, and genomic methods. This study presents the first draft short-read sequence of S. purpurea subsp. leucodermis, providing preliminary genomic evidence of differentiation from related taxa. This study also revealed a specific combination of anatomical features (prominent calcium oxalate crystals and amphistomatous leaves) and morphological characteristics (striated wood, glabrous buds, absence of stipules) that differentiate the taxon in question from the closely related species S. …

Influence Of A New Nanoensemble Of Graphene Oxide And Indole-3-Acetic Acid On The Morphophysiological, Biochemical, And Ultrastructural Characteristics Of Upland Cotton (Gossypium Hirsutum L.), Nurlan Amrahov, Ulviyya Hasanova, Aliyeva Gunel, Aghazada Goncha, Fuad Rzayev, Eldar Gasimov, Aliyeva Solmaz, Lala Gahramanli, Elvin Ibrahimli, Ruhangiz Mammadova, Zarema Gakhramanova, Cem Bayram, Goncha Eyvazova, Si̇bel Hasanova, Ziyaddin Mammadov

Turkish Journal of Botany

​The exogenous application of phytohormones plays a crucial role in the activation of adaptive mechanisms in plants under both normal and stress conditions. Therefore, the present study investigates the synthesis, characterization, and application of nanoensembles based on indole-3-acetic acid (IAA) and graphene oxide (GO) nanolayers. The surface of GO synthesized by the modified Hummer method was noncovalently functionalized with IAA molecules. The structure and morphological properties of the prepared materials were analyzed by Fourier transform infrared spectroscopy, X-ray diffraction, UV-Vis spectroscopy, and transmission electron microscopy. The IAA and IAA+GO nanoensemble enhanced the morphological parameters, lateral root formation, catalase and peroxidase …

Effects Of Calcium And Magnesium Ions On Wheat (Triticum Aestivum) Chromosome Structure Visualized Using Light And Scanning Elec​Tron Microscopes, Andi Salamah, Fitri Amalia Nurchasanah, Vycka Fikriyani Fairuz, Astari Dwiranti

Turkish Journal of Botany

Divalent cations, particularly calcium (Ca2+) and magnesium (Mg2+), are essential for maintaining chromosomal architecture, yet their roles in plants remain poorly characterized. This study investigated the effects of Ca2+ and Mg2+ on the chromosomal structure of wheat (Triticum aestivum, 2n = 6x = 42), a widely used model in plant cytogenetics. Root-tip chromosomes were isolated enzymatically and treated with BAPTA (a Ca2+-specific chelator), EDTA (a broad cation chelator), and buffer solutions containing either 5 mM Mg2+ (XBE5) or no Mg2+ (XBE). Chromosomes were stained with aceto-orcein for light microscopy and processed for scanning electron microscopy (SEM). Microscopic observations revealed that …

Systematic Implications Of Seed Morphology In Oxytropis (Galegeae: Fabaceae) From Pakistan, Amjad Khan, Amir Sultan, Raees Khan, Rozina Rozina, Shahab Ali, Ali Bagheri, Rifat Ullah Khan, Abdul Samad Mumtaz, Tariq Ullah, Ghalia Saleem Aljeddani, Hasil Khan

Turkish Journal of Botany

Oxytropis is a taxonomically challenging genus within the tribe Galegeae of the family Fabaceae. Despite its systematic importance, the seed morphology of Oxytropis has been poorly investigated. In the present study, we examined the seed morphology of 18 Oxytropis species representing 10 sections from the Pakistan, with the aim of evaluating the diagnostic value of seed traits using both light and scanning electron microscopy. The current investigation revealed two distinct seed shapes, namely cordiform and prolonged reniform, across the studied taxa. Seed length ranged from 1.75 mm in O. crassiuscula to 2.3 mm in O. duthieana, while seed width varied …

Optimized Immunoprecipitation Identifies Candidate Proteins Associated With Eyespot Protein Eye2 In Chlamydomonas Reinhardtii ​, Esra Öztürk, Telsa Mittelmeier, Carol Dieckmann, Atakan Sukatar

Turkish Journal of Botany

​The EYE2 protein is essential for eyespot assembly and localization in Chlamydomonas reinhardtii, yet the molecular mechanisms underlying its function remain poorly understood. In this study, we present a systematic evaluation and optimization of an immunoprecipitation (IP)-based workflow for isolating EYE2 and its associated protein complexes. Key methodological variables including strain selection, flagella removal, and detergent concentration were compared using western blotting to determine optimal extraction conditions. The combination of the cell wall-deficient cw15 strain, 4% digitonin extraction, and pH shock-mediated deflagellation significantly enhanced IP specificity and reproducibility. Using this optimized protocol, EYE2 and its potential interaction partners were isolated …

Oregon State Rank Assessment For Steens Mountain Cushion Buckwheat (Eriogonum Ovalifolium Var. Rubidum), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Steens Mountain Cushion Buckwheat (Eriogonum ovalifolium var. rubidum) using NatureServe methodology, 2026.

Water-Driven Reactivation Of Photosystem Ii In Plagiochasma Appendiculatum, Vineet Soni, Upma Bhatt, Yashwant Sompura

Turkish Journal of Botany

Plagiochasma appendiculatum, a desiccation-tolerant liverwort, offers a unique system for unraveling the biophysical dynamics of photosynthetic recovery upon rehydration. This study employed high-resolution chlorophyll a fluorescence (ChlF) kinetics to clarify the sequential reactivation of photosystem II (PSII) during the desiccation-to-rehydration transition. Upon desiccation, the OJIP transient collapsed into a linear trace, indicating complete photochemical arrest and inactivation of PSII reaction centers (RCs). Rehydration triggered a biphasic recovery, including an initial rapid phase (0–30 min) marked by sharp increases in F0 and Fm , indicative of PSII–LHCII supercomplex reassembly and thylakoid membrane restoration, followed by a stabilization phase (30–125 min) wherein …

Longitudinal Patterns In Stygobiont Distribution In The Hyporheic Zone Of The Karst Spring-Fed San Marcos River, Texas, Usa, Kenneth Sparks, Benjamin F. Schwartz, Safra Altman, Kathryn E. Perez, Zoey B. Chanin, Caroline Mierzejewski, Benjamin T. Hutchins

School of Integrative Biological & Chemical Sciences Faculty Publications

Groundwater-obligate taxa (stygobionts) exhibit variable degrees of habitat specialization, ranging from those restricted to single micro-habitats to generalists occurring in a broad range of habitat types. The karstic Edwards Aquifer is the most biodiverse and well-studied groundwater habitat in the continental United States, but some Edwards Aquifer-associated species also occupy the hyporheic zone of rivers downstream from karst. The goals of this research were to 1) assess the potential of the off-karst hyporheic zone as habitat for ‘karst’ species and 2) to determine how stygobiont richness, diversity, and abundance related to distance from karst in the hyporheic zone of a …

A Global Imprint Of Gadolinium-Based Contrast Agents Used In Magnetic Resonance Imaging In Drinking Water, Vanessa Hatje, Franciele Castro Novais, Anna Maria Orani, Maria Elisabete Machado, Pere Masque, Marc Metian

Research outputs 2022 to 2026

Since the 1980s, rare earth elements (REE), particularly gadolinium (Gd) used in gadolinium-based contrast agents (GdCA), have revolutionized Magnetic Resonance Imaging (MRI) diagnostics. However, the near-complete persistence of these compounds through wastewater treatment processes has led to widespread global environmental contamination. Here, we present a global assessment of REE concentrations and GdCA signatures in tap water from 148 cities across 89 countries and Antarctica, where anthropogenic Gd ranges from 0.1 to 61.2 ng L–1 and accounts for up to 99% of total dissolved Gd. Contamination hotspots are concentrated in Europe and North America. While Gd levels scale with MRI usage …

Physical And Chemical Ameliorations Of A Heavy Soil Constrained By Sodicity And Alkalinity For Improving Productivity In The Low Rainfall Regions Of Western Australia, Md. Shahinur Rahman, Gaus Azam Dr

Grain and Other Field Crops Research Articles

Heavy soil can be compacted and poorly structured with dense sodic and alkaline (high pH) clay in the B-horizon, which prevents root exploration in the subsoil layer, potentially restricting grain yield in the low rainfall regions of Western Australia (WA) and globally. This study investigated whether loosening of compacted soil layers through deep ripping with or without phosphorus (P) and gypsum addition can increase barley (Hordeum vulgare L.) crop productivity in a 3-year-long field experiment. Soil loosening significantly increased barley root exploration and yield immediately after deep ripping in 2021 and showed no significant difference in 2022 and 2023. The …

Tails From The Isle Of Devils: Two New Records Of Non-Native Invasive Scorpions (Arachnida: Scorpiones) Successfully Intercepted In Bermuda, Including The First Record Of Caraboctonidae, Danniella Sherwood, Mark Outerbridge, Struan R. Smith, Jenny Gosling, Myles Darrell

Euscorpius

Hadruroides sp. (Scorpiones: Caraboctonidae) is newly recorded as a successfully intercepted non-native invasive species in Bermuda, based on examination of a desiccated and damaged immature female specimen. A second record of an intercepted Centruroides gracilis (Latreille, 1804) (Scorpiones: Buthidae) is reported based on examination of an adult male.