Life Sciences Commons^™

Assessment Of Nitrogen Source Utilization During Nitrogen Fixation And Nitrogenase Regulation By Methanosarcina Acetivorans, Avery Carter

Biological Sciences Undergraduate Honors Theses

Nitrogen is a crucial element in biomolecules such as proteins and DNA, essential for all cellular life. Biological nitrogen fixation, a process utilized by certain bacteria and archaea, reduces dinitrogen (N₂) to ammonia (NH₃), enabling growth in the absence of fixed nitrogen sources like NH₃. This process is driven by the metalloenzyme nitrogenase, which catalyzes the reaction: N₂ + 16ATP + 8e⁻ + 8H⁺ → 2NH₃ + H₂ + 16ADP + 16Pi. Due to its high energy demand, nitrogenase production and activity are tightly regulated. Among archaea, nitrogenase is found exclusively in methanogens, where its regulation remains poorly understood. We …

Phosphatase Activity And Structure Of The Spoiie Protein In Clostridioides Difficile, Kathryn Wootten

Biological Sciences Undergraduate Honors Theses

Clostridioides difficile is a major cause of severe gastrointestinal infections and diseases, particularly in healthcare settings. Because of its ability to produce infectious endospores by sporulation, the protein SpoIIE, which is known to play a role in the regulation of this process, is being explored as a potential therapeutic target. In order to gain better insight into the structure and function of this protein, a concentrated and purified sample of the protein must be obtained. The goal of this study was to determine the conditions that would yield the highest amount of SpoIIE. The density of the cultures of bacteria …

Relationship Between Nutritional Knowledge And Eating Disorder Risk Levels, Valeria Fernandez

Human Nutrition and Hospitality Management Undergraduate Honors Theses

The prevalence of disordered eating is a critical public health concern that often progresses towards the development of a diagnosable eating disorder (ED). This, in turn, has detrimental physical and psychological consequences for individuals. Organizations such as the American Society of Parenteral and Enteral Nutrition (ASPEN) and the Academy of Nutrition and Dietetics (AND) have recognized nutrition education as a crucial component of prevention and recovery. Determining the extent to which nutrition knowledge is related to risk factors for EDs is worth investigating due to its implications for healthcare approaches – especially among adolescent and young adult populations. The goal …

The Role Of Cis-Acting Super-Enhancer Long Noncoding Rnas In Triple Negative Breast Cancer Progression, Sakthi Muthukrishnan

Biological Sciences

Breast cancer encompasses a diverse range of diseases characterized by the uncontrolled proliferation of cells within the mammary gland. This condition results in an accumulation of a large number of genetic mutations within an individual, altering the complex internal signaling system of a cell. Millions of women are affected by breast cancer, which remains a significant threat despite medical advancements. Ductal carcinoma in situ (DCIS) acts as a precursor to invasive ductal carcinoma (IDC), however, not all cases progress to invasive cancer. Triple-negative breast cancer (TNBC) is identified to be one aggressive subtype of IDC, where the cells lack sufficient …

Non-Invasive Focused Ultrasound To Reduce Gut Inflammation In Parkinson’S Disease, Amal F. Siddiqui

Biological Sciences

Parkinson's Disease (PD) is a neurodegenerative motor disorder that affects millions of people worldwide, with projections suggesting the number of diagnosed cases could reach 15 million by 2040 (Dorsey et al., 2018). While PD is primarily recognized for its impact on movement, it also frequently causes non-motor symptoms, including gastrointestinal (GI) issues such as constipation, which affects 60-80% of patients. Chronic gut inflammation has been proposed as a key factor exacerbating these symptoms. Despite the prevalence of GI complications in PD, they are often overlooked, and existing treatments for constipation are limited in both efficacy and scope. Vagus Nerve Stimulation …

Stimulus Dependence Of Visually Guided Behavior In Drosophila Melanogaster, Jessica Osarenoma Airhienbuwa

Biological Sciences

Vision is very important for navigating the world around us. The fruit fly, Drosophila melanogaster, is a great model for studying how the brain controls visually guided behavior. This is because they have a small nervous system, good genetic tools, and a complete map of their brain connections. In fruit flies, visual projection neurons (VPNs) send information from the eyes to the central brain, which affects what they see and how they act. This research looks at how certain groups of nerve cells influence fruit flies' behavior based on what visual stimuli. To study the brain circuits behind these behaviors, …

Screening Modified Polycyclic Compounds In Myotonic Dystrophy Type 1 Cell Lines, Maria Villacreses Valarezo

Biological Sciences

Myotonic dystrophy type 1 (DM1) is an autosomal dominant neuromuscular disease with no treatment options and causes progressive muscular atrophy and weakness. DM1 occurs when the DMPK gene contains an abnormal CTG repeat expansion in the 3’ untranslated region. Transcription of the expansion leads to sequestration of RNA binding proteins and downstream splicing dysregulation. This dysregulation ultimately affects many systems in the body leading to the DM1 phenotype. This project consists of two parts, with one of our goals being to test experimental small molecule (MPC-04) in an immortalized patient-derived DM1 cell model. Using RNA sequencing data from patient-derived DM1 …

Genomic Diversity Of Salmonella Enterica Serotype Braenderup In New York State, Nicole Zac Soligno

Biological Sciences

The Gram-negative Salmonella enterica (family Enterobacteriaceae) is a common foodborne pathogen mainly isolated from foods of animal origin. Salmonella can be transmitted to humans, causing diverse symptoms, from self-limiting gastrointestinal diseases to more fatal typhoid fever. The young, elderly, and Individuals with weakened immune systems are especially at risk from salmonellosis. Salmonella is a concern to public health and the food industry throughout the world, and its severity depends largely on its serotype, a classification based on the unique combination of surface antigens. In this study, I aimed to elucidate the population structure and antimicrobial resistance determinants of S. enterica …

Coaggregation With Actinomyces Naeslundii Reduces Corynebacterium Matruchotii Cell Division Rate And Increases In Cell Length, Sarah M. Kenny

Biological Sciences

Corynebacterium matruchotii is believed to form a scaffold-like structure within the human oral cavity so that other species of bacteria have a place to bind. Many types of bacteria may be found within oral biofilms, commonly referred to as dental plaque. Actinomyces naeslundii are associated with dental caries and they are frequently found in dental plaques. Previous studies in our lab have demonstrated that A. naeslundii has a greater coaggregation rate with C. matruchotii than other Actinomyces species. The purpose of this study is to determine the effect of coaggregation with A. naeslundii on C. matruchotii growth kinetics. In this …

Quantifying Temperature Effects On Developmental Rate And Plant Quality Of Compact Container-Grown Tomato (Solanum Lycopersicum), Morgan Humphrey

Horticulture Undergraduate Honors Theses

Mean daily temperature effects on plant development rates and quality were evaluated for compact container-grown tomato (Solanum lycopersicum). Compact tomato varieties ‘Siam’ and ‘Red Velvet’ were grown in greenhouses at 18 to 26 °C (Experiment 1) and 20 to 30 °C (Experiment 2) under supplemental high-pressure sodium lighting and 16-hour photoperiod. The number of days to first open flower, first ripe fruit, and from flower to ripe fruit were measured and development rates calculated by taking the reciprocal (e.g. 1/days). Temperature effects were predicted by fitting a linear (for first open flower) and a nonlinear exponential function (for …

Designing And Installing A Disability Accessible Teaching Garden, Annabelle D. Denham

Horticulture Undergraduate Honors Theses

As horticulture becomes increasingly popular as a subject, activity, and form of therapy, its inclusivity has not kept up with the pace of its growth. In order to address the need for inclusivity and accessibility, gardens must adopt universal design. Individuals with special needs continuously face discrimination. While horticulture therapy has long been studied and catered to primarily neurotypical and able-bodied individuals, there is limited research on creating gardens specifically to include those with disabilities. This project aimed to create a garden that could serve the needs of all participants, regardless of their ability and sensory needs. The garden was …

Ndp 54 V1 - National Diagnostic Protocol For Meadow Spittlebug (Philaenus Spumarius), Melinda Moir

Biosecurity research reports

National Diagnostic Protocols (NDPs) are diagnostic protocols for the unambiguous taxonomic identification of plant pests. NDPs:

• are a verified information resource for plant health diagnosticians
• are consistent with ISPM No. 27 – Diagnostic Protocols for Regulated Pests
• provide a nationally consistent approach to the identification of plant pests enabling transparency when comparing diagnostic results between laboratories; and,
• are endorsed by regulatory jurisdictions for use (either within their own facilities or when commissioning from others) in a pest incursion.

Where an International Plant Protection Convention (IPPC) diagnostic protocol exists it should be used in preference to NDPs, unless it is shown …

Serological Evaluation For Leptospirosis On Samples Received By The Connecticut Veterinary Medical Diagnostic Laboratory (Cvmdl), Hayden R. Samuels

Honors Scholar Theses

Leptospirosis is a globally distributed zoonotic disease caused by pathogenic species of Leptospira, motile spirochetes capable of infecting humans and animals. Transmission typically occurs through contact with water or soil contaminated by the urine of reservoirs or infected animals. Although leptospirosis is considered a neglected tropical disease, its geographic range is expanding due to climate change and urbanization. Surveillance remains limited in many regions, especially in the United States. This study aimed to assess the seroprevalence and serovar diversity of Leptospira exposure in a variety of domestic and wild animals submitted to the Connecticut Veterinary Medical Diagnostic Laboratory (CVMDL). …

Mechanistic Investigation Of Ring-Opening Polymerization Of Polycaprolactone Using Tin(Ii) Catalysts: Ligand Effects And Biomedical Applications, Eva-Larue M. Barber

Honors Scholar Theses

This research explores the mechanistic aspects of ring-opening polymerization (ROP) of ε-caprolactone (CL) to produce polycaprolactone (PCL), a biodegradable polymer widely used in biomedical applications. The study investigates how light exposure and catalyst concentration influence polymerization efficiency, using tin(II) 2-ethylhexanoate [Sn(Oct)₂] as the catalyst in a non-polar toluene solvent at 90 °C. Reactions were conducted under either ambient light or black light bulb (BLB) illumination, with monomer-to-catalyst ratios of 1:1 and 200:1.

Proton nuclear magnetic resonance (¹H NMR) spectroscopy was used to analyze conversion efficiency by tracking the disappearance of monomer signals and appearance of characteristic PCL peaks. Results revealed …

Latitudinal Gradients In Arctic Willows And Their Effects On Stream-Riparian Systems, Donal Heaney

Honors Scholar Theses

Extreme warming in the Arctic due to climate change presents the opportunity to study rapid changes to ecosystems and their potential resilience. Willow (Salix) shrubs form the base of many Arctic riparian ecosystems, and they have increased in height and range as temperatures have warmed. The effects of warming on willows could alter riparian ecosystems and neighboring streams, so understanding how climate change will affect willows is integral to understanding how the stream-riparian meta-ecosystem might change. I used data from the EvoME Institute to compare willow canopy cover above Arctic streams along a latitudinal transect and investigate how …

Cover Crop-Induced Improvements To Soil Hydraulic Properties And The Role Of Termination Time In Mitigating Negative Soil Moisture Impacts, Fabrizio Javier Pilco

Theses and Dissertations

In the Lower Rio Grande Valley of South Texas, water scarcity and drought pose ongoing challenges for farmers. Although cover crops are promoted for improving soil health and moisture, their effects on soil hydraulic properties in this region remain understudied. This thesis addresses both long-term (Chapter 2) and short-term (Chapter 3) impacts of cover crops on soil hydraulic properties and soil moisture. Long-term effects were evaluated through a three-year participatory field trial across four farms using a BACI design, while short terms were evaluated using a complete randomized block design. Soil hydraulic properties (residual water content θr, saturated water content …

Drug-Target Binding Affinity Prediction With Graph-Based Models: The Impact Of 3d Structural Information, Angel Antonio Peredo

Theses and Dissertations

Drug–target affinity (DTA) prediction is a critical step in accelerating drug discovery and reducing its associated costs. Existing computational approaches often employ one-dimensional protein sequences or two-dimensional molecular graphs, which can overlook important three-dimensional (3D) structural features. The present study investigates whether incorporating 3D information of both proteins and ligands can yield more meaningful representations for binding affinity prediction. Specifically, Graph Transformers (GT) are utilized, and the integration of Equivariant Graph Neural Networks (EGNN) is explored to preserve and leverage spatial information during learning.

Using the CrossDocked2020 dataset, which provides protein structures in Protein Data Bank (PDB) format, proteins and …

Identification Of Cadmium As A Structural And Functional Modulator Of Psd-95 Regulating Nmdars At Postsynaptic Membranes, Claudia Garza

Theses and Dissertations

Postsynaptic density-95 (PSD-95) is an essential scaffolding protein in excitatory neurons. PSD-95’s N-terminal palmitoylation region elicits synaptic plasticity by targeting, anchoring, and trafficking glutamate receptors, such as N-methyl-d-aspartate receptors (NMDAR), to the postsynaptic membrane. The molecular interactions of PSD-95 and its dysregulation in excitatory synapses are currently being explored as primary causes of neurodegenerative diseases and disorders, such as Alzheimer’s disease, Schizophrenia, and Parkinson’s disease. Recent studies demonstrate an overaccumulation of zinc at two cysteines (C3 and C5) and two histidines (H24 and H28) of PSD-95 blocks palmitoylation, causing a loss of NMDAR at the postsynaptic membrane. In addition, exposure …

Climate Resilience In Texas Assessing The Impact Of Extreme Weather On Energy Poverty And The Mitigating Role Of Tree Canopy Coverage, Yongwen Yang

Theses and Dissertations

Extreme weather events, including severe heat and cold waves —increasingly threaten public health, economic stability, and energy equity. This two-part study examines the interplay between extreme weather, energy poverty, and green infrastructure (tree canopy coverage) in Texas, a state characterized by climatic extremes and socioeconomic diversity.

This study consists of four chapters. The first chapter in the Introduction includes the research background, existing research, research gaps, research questions, and potential contributions. Followed by two core chapters. Chapter II aims to assess the impact of extreme weather on energy poverty at the household level. Chapter III aims to identify whether tree …

Survival, Biofilm Formation, And Control Of Foodborne Pathogens In Hydroponic Systems, Sai Rithin Reddy Kothur Thirupathi

Theses and Dissertations

The growing global population and increasingly unpredictable weather patterns have intensified the demand for sustainable food production methods. Hydroponics, a form of Controlled Environment Agriculture (CEA), has gained attention as a viable solution due to its efficient use of resources such as land and water. Although hydroponic systems are perceived as safer alternatives to conventional farming, recent foodborne outbreaks associated with these systems have raised significant public health concerns. This thesis research investigated the food safety risk in hydroponic, particularly the survival and persistence of foodborne pathogens. Chapters I and II provide a comprehensive overview of hydroponics and the microbial …

The Influence Of Solar Energy Infrastructure On Pollinators And Crops, Deisy Garcia

Theses and Dissertations

As the human population grows, demand for agriculture and renewable energy rises. Landuse competition is caused by the expansion of area-intensive solar photovoltaic (PV) facilities. While solar energy is crucial to mitigate climate change, it presents challenges related to land availability and effects on habitats for essential pollinators. In Chapter II, a spatial analysis was conducted to examine the relationship between solar panel density and pollinator diversity, exploring regions with the least interaction between these two factors. Our findings can inform solar siting and management strategies at landscape levels, in conjunction with field studies, that both mitigate potential interaction and …

Cloning And Heterologous Expression Of Human Nachrs And A Unique Spider Venom Toxin, Christine M. Vega

Theses and Dissertations

Drug development research has long focused on synthesizing novel therapeutics while overlooking isolation from naturally available sources. Recently, the discovery of the therapeutic effects of highly bioavailable animal venom caused the field of venom research to soar in popularity. Animal venom serves as a natural, sophisticated tool optimized over millions of years by evolution with the ability to bind to ion channels such as nAChRs, non-specific ligand-gated ion channels distributed throughout the human nervous system, with high selectivity and specificity. However, purifying individual venom toxins from crude venom is challenging due to its availability. Therefore, synthesizing large quantities of venom …

A Comparative Study Of Urban And Natural Nesting Gray Hawks In The Lower Rio Grande Valley Of South Texas, Evan Farese

Theses and Dissertations

Urbanization can negatively impact birds of prey, which occupy higher trophic levels. The Gray Hawk (Buteo plagiatus) is a neotropical raptor inhabiting the Lower Rio Grande Valley (LRGV) of Texas, where it is threatened. The species’ ecology has been little studied and it is unclear how urbanization may affect population viability. I studied Gray Hawk reproductive success, diet, and thermal ecology at nests in urban and natural habitats in the LRGV. Camera trap data showed adults at urban nests delivered mostly avian prey, while mammalian prey was most frequently brought to natural nests. Data from temperature loggers showed …

Knowledge And Perceptions About Feeding And Growth In Infants And Young Children Among Early Interventionists, Kayla Chambers

Electronic Theses and Dissertations

Nutrition plays a vital role in early childhood, where rapid growth and development occur. This study investigates Early Interventionists’ (EIs) nutrition knowledge and perceptions of nutrition-related concerns in children receiving services through the Tennessee Early Intervention System (TEIS). An electronic survey was distributed to EIs in Tennessee to assess their nutrition knowledge and perceptions and to identify nutrition concerns. Findings revealed that most EIs have never received any nutrition education, despite being asked for nutrition guidance by families and being open to nutrition-related training. The EIs reported seeing nutrition concerns such as growth delays, food refusal, and picky eating, but …

Therapeutic Applications Of A Novel Humanized Monoclonal Antibody Targeting Chemokine Receptor Ccr9 In Pancreatic Cancer, Hannah G. Mcdonald, Anna M. Reagan, Charles J. Bailey, Mei Gao, Muqiang Gao, Angelica L. Solomon, Michael J. Cavnar, Prakash Pandalai, Mautin Barry-Hundeyin, Megan Harper, Justin A. Rueckert, Ángela Turrero, Araceli Tobio, Anxo Vidal, Daniel Roca-Lema, Elia Álvarez-Coiradas, Pablo Garrido, Laureano Simón, Joseph Kim

Markey Cancer Center Faculty Publications

The relative failure of immune checkpoint inhibitors in pancreatic ductal adenocarcinoma (PDAC) despite having a dense, immunosuppressive tumor microenvironment highlights the need to target alternate/escape pathways. We have previously examined C–C chemokine receptor type 9 (CCR9) as a candidate immune checkpoint and developed a targeted, humanized monoclonal antibody (SRB2). Cytotoxicity of SRB2 was evaluated in vitro and in vivo. CCR9 expression on PDAC cells/tissues, immune components of patient-derived organoids (PDOs), and antibody-dependent cell-mediated cytotoxicity were examined. In PANC-1 and MIA PaCa-2 cell lines, we demonstrated highest CCR9 expression; however, no direct cytotoxic effect was observed with SRB2 treatment. In PANC-1 …

The Role Of Ucp2 In Pancreatic Cancer Metabolism And Its Potential As A Radiosensitizer, Emily Rieff

Dissertations and Theses (Open Access)

Uncoupling protein 2 (UCP2) is a mitochondrial protein that regulates the flow of protons down the gradient established by the electron transport chain (ETC) without generating ATP, thus uncoupling the proton gradient from ATP generation. In tumors, specifically pancreatic cancer (PDAC), the ETC is highly stimulated to generate the copious ATP needed by the tumor to grow. However, extended ETC use increases reactive oxygen species (ROS), and if left unchecked, results in cell death. To evade this, PDAC employs antioxidant strategies, including upregulating UCP2 in tumor cells. In addition to its uncoupling function, UCP2 indirectly controls ROS levels by maintaining …

Effects Of Snacking Habits On Overall Health And Cognition Of University Students, Kelly Shaw

Electronic Theses, Projects, and Dissertations

Title: Effects of Snacking Habits on Overall Health and Cognition of University Students

Authors: Shaw, K., Tolar-Peterson, T., & Malik, N.

Affiliation: College of Natural Sciences, Department of Health Science and Human Ecology, California State University, San Bernardino 5500 University Parkway, San Bernardino, CA 92407

Background and Aims: Snack consumption is increasing, and university students may be particularly susceptible to unhealthy snacking habits. Snacking patterns may affect students’ academic performance, mood, or body weight. This study assessed students’ snacking habits and its relationship with grade point average (GPA), mood, body mass index (BMI), and food insecurity.

Methods: Using an …

Assessing Phenotypic Variation Across Generations Of Iberodes Littoralis Under Climate Change, Mariangel M. Fernandez Silva

Electronic Theses, Projects, and Dissertations

The consequences of climate change and anthropogenic activity have decreased wildlife biodiversity. Plants are particularly vulnerable to climate change due to their large biomass on the planet and sessile nature. A particularly useful method for plants to cope with environmental changes is phenotypic plasticity. Adjusting morphological traits through plasticity can help plants cope with environmental changes. Furthermore, plastic responses can be passed down through methods such as changes in DNA sequence or epigenetic modifications.

Our research project focuses on an herb, Iberodes littoralis, a species of concern native to the Siberian Peninsula with approximately thirteen extant populations. The data that …

Estimation Of Nitrates In Southern California Water Resources, Sarath Babu, Sarath Babu

Electronic Theses, Projects, and Dissertations

The research examines the water quality of Southern California, focusing on nitrate (NO₃) levels. The study aims to provide insights into potential health disparities stemming from disproportionate exposure to these contaminants, particularly in underserved communities. Utilizing advanced analytical tools such as the UV spectrophotometer AquaMate Plus, water samples (n=40) were analyzed to assess nitrate levels compared to previous data (n=70 Approx.). The UV spectrophotometer operates based on measuring the absorbance of light intensity by the analyzed samples, providing valuable data for water quality assessment. Preliminary findings suggest varying levels of nitrate presence across the studied regions (0.4-43 ppm), …

Awareness And Attitudes Toward Diabetes Among Students In The California State University System, Cesar Fajardo

Electronic Theses, Projects, and Dissertations

Background and Aims: The prevalence of type 2 diabetes has been increasing globally. Studies examining patient awareness and attitudes toward diabetes have been conducted and found that diabetes education does increase patient knowledge but has no effect on attitudes. Additionally, many of these studies did not assess university students’ views on type 2 diabetes. Given that type 2 diabetes incidence is increasing among young adults, more attention must be given to this population. Therefore, the aim of this study was to investigate CSUSB students' understanding and attitudes toward type 2 diabetes.

Methods: A cross-sectional study using electronic surveys with …