Life Sciences Commons^™

From Milpas To The Market: A Study On The Use Of Metal Silos For Safer And Better Storage Of Guatemalan Maize, José Rodrigo Mendoza

Department of Food Science and Technology: Dissertations, Theses, and Student Research

This project aimed to implement the use of metal silos to improve quality and safety of maize consumed by inhabitants of the highlands of Guatemala. This manuscript includes a literature review of the maize production chain in Guatemala, a survey about agricultural practices used in the region of study, as well as a characterization of the analyzed maize regarding its mycoflora, nutritional composition, and insect infestation. To better understand the current situation regarding agricultural practices and maize consumption, a survey was carried out. Sample consisted of 280 families representing 14 rural communities distributed in the townships of Todos Santos and …

Phylogenetics And Diversification Of Whirligig Beetles (Coleoptera, Gyrinidae), Grey Thomas Gustafson

Biology ETDs

Whirligig beetles are a family of aquatic beetles with an estimated 1,000 species distributed globally. Phylogenetic analysis incorporating molecular data has only recently been conducted on the family and many genera have never received modern taxonomic revision. The first chapter of the dissertation provides a taxonomic revision of the Southeast Asian whirligig beetle genus Porrorhynchus, finding the genus to contain 5 species, and no support for the numerous proposed subspecies. For the second chapter a phylogenetic analysis utilizing the most novel phylogenetic reconstructions methods incorporating the new Fossilized Birth-Death macroevolutionary model implemented in the program MrBayes 3.2.6 was conducted on …

Energetics Across Ecological Scales, John M. Grady

Biology ETDs

Energy is a common currency of ecological interactions. In this dissertation, I consider ecological energetics at different temporal, spatial and organizational scales. In my first chapter, I examine the energetics and thermoregulation of an enigmatic taxon: dinosaurs. From fossil evidence and assessment of living vertebrates I conclude that many non-avian dinosaurs were likely thermally intermediate, or 'mesothermic'. In my second chapter I detail the empirical evidence gathered to buttress my claim of dinosaur mesothermy. In my third chapter, I show how ecosystem rates of carbon flux, gross primary production and total biomass can be linked to individual body size. In …

Coevolving Histories Inside And Out: Phylogenetics, Comparative Parasitology, And Host Affinities Of Chipmunk Sucking Lice And Pinworms, Kayce C. Bell

Biology ETDs

Diversification of parasite species, in light of their host association, is an area ripe for testing hypotheses of evolution when one species requires another for survival. The 23 species of western North American chipmunks (genus Tamias) host two species of ectoparasitic sucking lice (Anoplura) and two species of endoparasitic pinworms (Nematoda). I used a phylogenetic approach to investigate the evolutionary histories of the parasites in light of the hosts and the landscape. In comparing the parasites, I found that the two pinworm species have similar diversification patterns, linked to hosts, but those processes occurred on different time scales. As another …

Altitudinal Gradients Do Not Predict Plant-Symbiont Responses To Experimental Warming, Melanie R. Kazenel

Biology ETDs

Fungal symbionts, ubiquitous inhabitants of above- and belowground plant tissues, can play important roles in increasing plant tolerance to abiotic and biotic stress. Disruption of plant-fungal interactions may therefore have important consequences for plant responses to climate change. Both altitudinal gradients and warming experiments can be useful tools for understanding responses of symbioses to climate shifts, but the degree to which altitudinal patterns will predict species responses to warming has received little attention for plant-symbiont interactions. This study combined surveys along replicated altitudinal gradients with a long-term warming experiment at the Rocky Mountain Biological Laboratory (RMBL) in Colorado, USA to …

Mammals Of The Greater Gila Region, Amanda K. Jones

Biology ETDs

The Greater Gila Region is an important area for study of mammals due to its unique physiographic history, leading to high elevational relief and many associated habitats. Due to the variety of habitats, the Gila is home to a very diverse assemblage of mammal fauna: 100 native species, 95 of which are extant in the region. This paper documents these species' current and historic distributions, taxonomy, habitat affinities, current phylogeographic studies, reproductive timing, and any other pertinent information. In addition, novel phylogeographic studies for four selected species were performed to fill in gaps in previous studies where Gila sampling was …

Experimental Drought And Soil Depth Interactively Influence Fungal Community Composition In Piñon-Juniper Woodland, Eric Olivas

Biology ETDs

Drought can flip ecosystems between states and in the process alter key systems such as plant biomass and carbon balance. Many drought-related studies have focused on plant responses or charismatic megafauna. Less work has addressed drought in the context of aboveground-belowground feedbacks. Impacts of drought are increasing, particularly in arid environments such as the southwestern United States. Major tree species of these regions, such as piñon pine, are adapted to a wetter and more predictable climate than the projected future climate. The effects of drought on piñon and its ectomycorrhizae have been studied observationally and in laboratories. Soil depth has …

A Multidimensional Investigation Of The Niche: Geographic Distributions, Body Size, And Interspecific Interactions Of Late Quaternary North American Canidae, Melissa Irene Pardi

Biology ETDs

A pressing conservation challenge is understanding how organisms will be impacted by climate change. From the paleontological record, we know organisms have options when facing change: they can do nothing, move, or adapt. These responses shape an organism's niche (a foundational concept in biology) that is abiotically constrained, but modified by biotic interactions. The greatest disturbances in recent North American geologic history is the human mediated extinction of megafauna ~11,700 years B.P. and climate change following the last glacial period. We used the fossil record to address ecological questions concerning conservationists; our focus was on Canidae and humans. Species distribution …

Patterns In Richness And Community Structure: From Bacteria To Apex Predators, Ara S. Winter

Biology ETDs

Patterns of community structure and richness provide context for studies from microbial ecology, global macroecology, languages, to Bayesian statistics. Diversity patterns for animals on land and their predictor variables are well studied. However, diversity patterns for bacterial communities and marine macroorganisms are not well studied or understood. Here I examine diversity patterns in caves, on the external surface of Chiroptera (bats), and in marine ecosystems. At the local to regional scale we investigate factors that drive bacterial community patterns in richness and composition in lava cave microbial mats and microbes on bats. Lastly, out of the cave and into the …

Endozoochorous Spread Of Nonnative Plant Species By White-Tailed Deer, Odocoileus Virginianus, Andrew Jordan Spychalla

Graduate Theses/Dissertations

Movement of plant seeds can be facilitated by endozoochory in white-tailed deer (Odocoileus virginianus) and elk (Cervus elaphus), but at rates that are unknown in natural systems. Spread of planted forage crops into wildlands, or nonnative invasive weeds into food plots would affect ecosystem processes and management costs. To address endozoochory, collections of fecal pellets from both ungulate species were done at the Current River Conservation Area in Southeastern Missouri. Randomly chosen individual pellets collected from nine food plots were planted in a greenhouse setting. After cold stratification of pellets (2°C at 15 days), pellets were either left whole or …

Access To Groundwater And Link To The Impact On Quality Of Life: A Look At The Past, Present And Future Public Health Needs In Mzimba District, Malawi., R. C.G. Chidya, R. H. Holm, M. Tembo, B. Cole, P. Workneh, J. Kanyama

Faculty and Staff Scholarship

Imagine a world where you have to get up at 4am to walk for two hours in the dark to fetch water. This remains true in Malawi, where it is said that the Millennium Development Goals have been met. This research aimed at understanding the impact access to groundwater has on people's ‘Being’, ‘Belonging’ and ‘Becoming,’ as well as on people's capabilities and on their quality of life in Mzimba District, Malawi. Being, Belonging and Becoming define three life domains. Being reveals ‘who one is,’ Belonging reflects ‘connections with one's environments’ and Becoming relates to ‘achieving personal goals, hopes and …

Pumping Tests, La Grange Region, Western Australia, Groundwater Consulting Services

Natural resources commissioned reports

Groundwater Consulting Services was contracted to collate and analyse pumping test information from four sites in the La Grange region, near Broome. Two of the pumping tests were conducted by Groundwater Consulting Services and two pumping tests were conducted by Kimberley Water Pty Ltd under instruction from the Department of Agriculture and Food, Western Australia.

The major objective of the work was to provide aquifer hydraulic data to be used as input into a numerical model being developed by the Department of Agriculture and Food. A secondary objective was to provide irrigation water supply development advice for potential irrigation projects. …

Climate-Ready Agriculture: A Situation Statement For Western Australia, Robert Anthony Sudmeyer, Anne Bennett, Melanie Strawbridge

Bulletins 4000 -

Projected future changes in the state’s climate will present new challenges for our producers. The Department of Agriculture and Food, Western Australia (DAFWA) continues to work with agricultural industries to lay solid foundations for an agricultural sector that has a range of response options.

This situation statement provides an assessment of how climate-ready the state’s agricultural sectors are and provides guidance for investment priorities for DAFWA for the period 2015–2020.

Phycotoxin Loads In Bottlenose Dolphins (Tursiops Truncatus) From The Indian River Lagoon Estuary System And Coastal Altlantic Waters, Florida: 2002-2011, Jeremy Alan Browning

Theses and Dissertations

Harmful algal blooms (HABs) are dramatic increases of algae that produce phycotoxins, and these toxins lead to subsequent neurological dysfunction with symptomatic illness leading, in extreme cases, to mass mortalities of marine mammals. This presents a conservation challenge since the frequency and severity of HABs are increasing on a global scale. Two HAB species that impact marine mammals residing in and utilizing an eastern Florida estuary and surrounding coastal Atlantic waters are Karenia brevis (K. brevis) and Pyrodinium bahamense (Pyrodinium); these HAB species produce the neurotoxins brevetoxin (PbTx) and saxitoxin (STX), respectively. These toxins are present at times in high …

An Informatics Research Agenda To Support Precision Medicine: Seven Key Areas., Jessica D Tenenbaum, Paul Avillach, Marge Benham-Hutchins, Matthew K Breitenstein, Erin L Crowgey, Mark A Hoffman, Xia Jiang, Subha Madhavan, John E Mattison, Radhakrishnan Nagarajan, Bisakha Ray, Dmitriy Shin, Shyam Visweswaran, Zhongming Zhao, Robert R Freimuth

Manuscripts, Articles, Book Chapters and Other Papers

The recent announcement of the Precision Medicine Initiative by President Obama has brought precision medicine (PM) to the forefront for healthcare providers, researchers, regulators, innovators, and funders alike. As technologies continue to evolve and datasets grow in magnitude, a strong computational infrastructure will be essential to realize PM's vision of improved healthcare derived from personal data. In addition, informatics research and innovation affords a tremendous opportunity to drive the science underlying PM. The informatics community must lead the development of technologies and methodologies that will increase the discovery and application of biomedical knowledge through close collaboration between researchers, clinicians, and …

Recumbence Behavior In Zoo Elephants: Determination Of Patterns And Frequency Of Recumbent Rest And Associated Environmental And Social Factors, Matthew Robert Holdgate, Cheryl L. Meehan, Jennifer N. Hogan, Lance J. Miller, Jeff Rushen, Anne-Marie De Passillé, Josesph Soltis, Jeff Andrews, David J. Shepherdson

Biology Faculty Publications and Presentations

Resting behaviors are an essential component of animal welfare but have received little attention in zoological research. African savanna elephant (Loxodonta africana) and Asian elephant (Elephas maximus) rest includes recumbent postures, but no large-scale investigation of African and Asian zoo elephant recumbence has been previously conducted. We used anklets equipped with accelerometers to measure recumbence in 72 adult female African (n = 44) and Asian (n = 28)elephants housed in 40 North American zoos. We collected 344 days of data and determined associations between recumbence and social, housing, management, and demographic factors. African elephants were recumbent less (2.1 hours/day, S.D. …

Computational Modeling Of Facial Response For Detecting Differential Traits In Autism Spectrum Disorders, Manar D. Samad

Electrical & Computer Engineering Theses & Dissertations

This dissertation proposes novel computational modeling and computer vision methods for the analysis and discovery of differential traits in subjects with Autism Spectrum Disorders (ASD) using video and three-dimensional (3D) images of face and facial expressions. ASD is a neurodevelopmental disorder that impairs an individual’s nonverbal communication skills. This work studies ASD from the pathophysiology of facial expressions which may manifest atypical responses in the face. State-of-the-art psychophysical studies mostly employ na¨ıve human raters to visually score atypical facial responses of individuals with ASD, which may be subjective, tedious, and error prone. A few quantitative studies use intrusive sensors on …

Bayesian Methods For Comparing Species Physiological And Ecological Response Curves, Michael B. Ashcroft, Angélica Casanova-Katny, Kerrie Mengersen, Todd N. Rosenstiel, Johanna D. Turnbull, Jane Wasley, Melinda J. Waterman, Gustavo E. Zúñiga, Sharon A. Robinson

Biology Faculty Publications and Presentations

Many ecological questions require information on species' optimal conditions or critical limits along environmental gradients. These attributes can be compared to answer questions on niche partitioning, species coexistence and niche conservatism. However, these comparisons are unconvincing when existing methods do not quantify the uncertainty in the attributes or rely on assumptions about the shape of species' responses to the environmental gradient. The aim of this study was to develop a model to quantify the uncertainty in the attributes of species response curves and allow them to be tested for substantive differences without making assumptions about the shape of the responses. …

Why We Should Not Postpone Awareness Of Wild Animal Suffering, Catia Faria

Animal Sentience

Ng (2016) restates his case for the importance of wild animal suffering (1995). Nevertheless, he suggests that the most effective way to reduce nonhuman suffering overall is to give short-term priority to the suffering of farmed animals. It is not clear that Ng puts forward a successful case. Our current efforts to prevent animal suffering overall should also include raising awareness of wild animal suffering now as well as promoting research on safe and feasible ways to prevent wild animal suffering in the future.

San Juan Bautista, Tract Near [Breen], Diseño 560, Glo No. 248, San Benito County, And Associated Historical Documents For Rancho .

San Benito County

National Archives Diseños - Hand-drawn Spanish-Mexican map demonstrating the physical boundaries of land granted to Mexican citizens by the Spanish or Mexican.

Expediente – Hand-written Spanish-Mexican land grant document issued to Mexican citizens in Alta California for land in Alta-California.

Work Progress Administration Abstract (WPA Abstract) – A summary document prepared in 1938 under the Work Progress Administration program detailing the history of a rancho beginning with the Spanish-American land through the U.S. patenting process.

Hoffman Notes -- Summary of information concerning claims made for the Rancho lands from the Appendix listing Table of Land Claims in the Reports of …

The Effect Of A Serious Digital Game On Students' Ability To Transfer Knowledge In Secondary Agricultural Education: An Exploratory Study, J. C. Bunch, J . Shane Robinson, M. Craig Edwards, Pavlo D. Antonenko

Journal of Human Sciences and Extension

This study’s purpose was to compare the effectiveness of the traditional, lecture and discussion method to a digital game-based learning (DGBL) approach on students’ near and far knowledge transfer abilities in agriculture and mathematics regarding a unit on swine diseases in animal science courses. Two research questions guided the study, which employed a quasi-experimental, between-groups design. No statistically significant differences (p > .05) were found between the counterfactual group and the treatment group regarding students’ near and far knowledge transfer. Based on this result, it can be recommended that professional development opportunities be created with an emphasis on using serious games …

San Lorenzo [Sanchez], Diseño 674, Glo No. 300, San Benito County, And Associated Historical Documents.

San Benito County

National Archives Diseños - Hand-drawn Spanish-Mexican map demonstrating the physical boundaries of land granted to Mexican citizens by the Spanish or Mexican.

Expediente – Hand-written Spanish-Mexican land grant document issued to Mexican citizens in Alta California for land in Alta-California.

Work Progress Administration Abstract (WPA Abstract) – A summary document prepared in 1938 under the Work Progress Administration program detailing the history of a rancho beginning with the Spanish-American land through the U.S. patenting process.

Hoffman Notes -- Summary of information concerning claims made for the Rancho lands from the Appendix listing Table of Land Claims in the Reports of …

Santa Ana Y Quien, Diseños 22 And 55, Glo No. 237, San Benito County, And Associated Historical Documents.

San Benito County

National Archives Diseños - Hand-drawn Spanish-Mexican map demonstrating the physical boundaries of land granted to Mexican citizens by the Spanish or Mexican.

Expediente – Hand-written Spanish-Mexican land grant document issued to Mexican citizens in Alta California for land in Alta-California.

Work Progress Administration Abstract (WPA Abstract) – A summary document prepared in 1938 under the Work Progress Administration program detailing the history of a rancho beginning with the Spanish-American land through the U.S. patenting process.

Hoffman Notes -- Summary of information concerning claims made for the Rancho lands from the Appendix listing Table of Land Claims in the Reports of …

San Justo, Diseño 47, Glo No. 238, San Benito County, And Associated Historical Documents.

San Benito County

National Archives Diseños - Hand-drawn Spanish-Mexican map demonstrating the physical boundaries of land granted to Mexican citizens by the Spanish or Mexican.

Expediente – Hand-written Spanish-Mexican land grant document issued to Mexican citizens in Alta California for land in Alta-California.

Work Progress Administration Abstract (WPA Abstract) – A summary document prepared in 1938 under the Work Progress Administration program detailing the history of a rancho beginning with the Spanish-American land through the U.S. patenting process.

Hoffman Notes -- Summary of information concerning claims made for the Rancho lands from the Appendix listing Table of Land Claims in the Reports of …

Determination Of Glut1 Oligomerization Parameters Using Bioluminescent Förster Resonance Energy Transfer, Brendan D. Looyenga, Calvin Vanopstall, Zion Lee, Jed Bell

University Faculty Publications and Creative Works

The facilitated glucose transporter GLUT1 (SLC2A1) is an important mediator of glucose homeostasis in humans. Though it is found in most cell types to some extent, the level of GLUT1 expression across different cell types can vary dramatically. Prior studies in erythrocytes - which express particularly high levels of GLUT1 - have suggested that GLUT1 is able to form tetrameric complexes with enhanced transport activity. Whether dynamic aggregation of GLUT1 also occurs in cell types with more modest expression of GLUT1, however, is unclear. To address this question, we developed a genetically encoded bioluminescent Förster resonance energy transfer (BRET) assay …

Full Issue, Volume 4, Number 2, Donna J. Peterson

Journal of Human Sciences and Extension

No abstract provided.

A Major Decision: Identifying Factors That Influence Agriculture Students’ Choice Of Academic Major, Kristin Stair, Shelli Danjean, J. Joey Blackburn, J. C. Bunch

Journal of Human Sciences and Extension

Colleges of Agriculture (CoAs) are estimated to supply only slightly more than half of the number of graduates needed to fill job openings through 2015. The purpose of this research study was to describe the factors influencing agriculture students’ choice of major. The population for this descriptive research study consisted of full-time CoA freshmen enrolled in AGRI 1001: Introduction to Agriculture at Louisiana State University. A total of 259 students were asked to participate in the electronic survey. All students completed the survey for a 100% response rate. Consistent with the model proposed by Hodges and Karpova (2010), the factors …

Potential For Rangeland Grassfed Assurance Programs In Western Australia, Eric Broad

Animal production and livestock published reports

The access to large aquifers in the Pilbara region, the investment in mosaic irrigation, the global consumer demand for certified grassfed product and the need to back any branded product with an auditable assurance program were all key factors contributing to the undertaking of this project.

The project conducted a desktop review of existing global grassfed certification programs, undertook modelling to determine the projected viability for grassfed beef, engaged with producers, butchers and processors in Western Australia to determine the potential for developing a Grassfed Assurance Program for Western Australia.

All sectors of the supply chain expressed support for the …

Establishing An Ecological Baseline Of Macroinfaunal Assemblages In Nearshore Sediments Of Southeast Florida, Candace Grimes

HCNSO Student Theses and Dissertations

Changes in the biosphere require ecological baselines in order to compare past, present, and future conditions and identify their effects. Establishing ecological baselines for infauna in southeastern Florida is a key component to understanding effects of current and future disturbances; however, nearshore sediment infaunal communities are neither as thoroughly investigated nor as well understood as, for example, coral reefs, seagrass beds, and mangroves. Baseline studies help assess and monitor changes due, for example, to human population growth, sea level change, and global warming. Therefore, six benthic cores were collected quarterly from six locations from May 2015 to February 2016 using …

San Juan Bautista, Tract Near [Larios], Diseño 297, Glo No. 247-A, San Benito County, And Associated Historical Documents For Rancho .

San Benito County

National Archives Diseños - Hand-drawn Spanish-Mexican map demonstrating the physical boundaries of land granted to Mexican citizens by the Spanish or Mexican.

Expediente – Hand-written Spanish-Mexican land grant document issued to Mexican citizens in Alta California for land in Alta-California.

Work Progress Administration Abstract (WPA Abstract) – A summary document prepared in 1938 under the Work Progress Administration program detailing the history of a rancho beginning with the Spanish-American land through the U.S. patenting process.

Hoffman Notes -- Summary of information concerning claims made for the Rancho lands from the Appendix listing Table of Land Claims in the Reports of …