Life Sciences Commons^™

Sequestered Alkaloid Defenses In The Dendrobatid Poison Frog Oophaga Pumilio Provide Variable Protection From Microbial Pathogens, Kyle Hovey

Masters Theses

Amphibians produce the majority of their defensive chemicals, however alkaloid defenses in poison frogs are sequestered from dietary arthropods. Alkaloids function as a defense against predators, and certain types appear to inhibit microbial growth. However, alkaloid defenses vary considerably among populations of poison frogs, reflecting geographic differences in availability of dietary arthropods. Consequently, environmentally driven differences in poison frog alkaloid defenses may have significant implications regarding their protection against pathogens. While natural alkaloid mixtures in poison frogs have recently been shown to inhibit growth of non-pathogenic microbes, no studies have examined the effectiveness of alkaloids against microbes that infect frogs. …

The Implications Of Different Types Of Diet And Exercise On Human Health, Bethanne C. Clayton

Masters Theses & Specialist Projects

There is need for enhanced prevention and treatment methods to combat sedentary lifestyle, obesity, and chronic disease by investigating the impact of specific exercise modalities and dietary factors on human health. The purposes of this study were: 1) to assess self-selected and perceived exercise intensity during High-Intensity Functional Training (HIFT) between males and females and to determine variables that predict self-selected exercise intensity (%VO2max) and/or perceived intensity (RPE) and 2) to investigate the impact of obesity on skeletal muscle metabolism in response to lipid oversupply by analyzing the responses of genes linked with fatty acid oxidation and inflammation in lean …

Vocal Individuality And Species Divergence In The Contact Calls Of Banded Penguins, Livio Favaro, Claudia Gili, Cristiano Da Rugna, Guido Gnone, Chiara Fissore, Daniel Sanchez, Alan G. Mcelligott, Marco Gamba, Daniela Pessani

Bioacoustics Collection

Penguins produce contact calls to maintain social relationships and group cohesion. Such vocalisations have recently been demonstrated to encode individual identity information in the African penguin. Using a source-filter theory approach, we investigated whether acoustic cues of individuality can also be found in other Spheniscus penguins and the acoustic features of contact calls have diverged within this genus. We recorded vocalisations from two ex-situ colonies of Humboldt penguin and Magellanic penguin (sympatric and potentially interbreeding in the wild) and one ex-situ group of African penguins (allopatric although capable of interbreeding with the other two species in captivity). We measured 14 …

On-Farm Qualitative Behaviour Assessment Of Dairy Goats In Different Housing Conditions, Lilia Grosso, Monica Battini, Françoise Wemelsfelder, Sara Barbieri, Michela Minero, Emanuela Dalla Costa, Silvana Mattiello

Sentience Collection

This study reports the results of the first investigation on the use of Qualitative Behaviour Assessment (QBA) in dairy goats, using a fixed-list of descriptors specifically developed for this species. It aimed to verify whether QBA can be reliably used by observers with different backgrounds to differentiate between the emotional states of goats kept under different environmental conditions. Two trained observers simultaneously assessed 16 dairy goat farms (8 “Housed” (H) farms, where animals were observed in free stall pens, and 8 “Pasture” (P) farms, where animals were observed in open ranges), using a list of 16 QBA descriptors that were …

Goats Display Audience-Dependent Human-Directed Gazing Behaviour In A Problem-Solving Task, Christian Nawroth, Jemma M. Brett, Alan G. Mcelligott

Social Cognition Collection

Domestication is an important factor driving changes in animal cognition and behaviour. In particular, the capacity of dogs to communicate in a referential and intentional way with humans is considered a key outcome of how domestication as a companion animal shaped the canid brain. However, the lack of comparison with other domestic animals makes general conclusions about how domestication has affected these important cognitive features difficult. We investigated human-directed behaviour in an ‘unsolvable problem’ task in a domestic, but non-companion species: goats. During the test, goats experienced a forward facing or an away facing person. They gazed towards the forward …

An Update Of The Department Of Fisheries, Western Australia, Invertebrate And Reef Health Research And Monitoring At Cocos (Keeling) Islands, S.N Evans, N Konzewitsch, Lynda Bellchambers Dr

Fisheries Research Reports

The Cocos (Keeling) Islands are an Australian External Territory located in the Indian Ocean (12° 12" S, 96° 54" E). The group is comprised of two separate coral atolls, consisting of 27 islands. The southern atoll consists of 26 islands, surrounding a shallow lagoon, two of which are inhabited with a total population of approximately 600 people. Since 2002, a Service Delivery Arrangement (SDA) has been in place between the Department of Fisheries, Western Australia (DoF) and the Commonwealth Government of Australia to manage the fish resources of the Cocos (Keeling) Islands (CKI).

Developing A Data Repository Of Standard Concussion Assessment Clinical Data For Research Involving College Athletes, Arthur C. Maerlender, Jennifer Mize Nelson, Julie A. Honaker

Center for Brain, Biology, and Behavior: Faculty Publications

In sports concussion research, obtaining quality data from a sufficient number of participants to reach statistical power has been a particular problem. In addition, the necessary requirements of accessibility, informed consent, and confidentiality must be met. There is need to develop more efficient and controlled methods for collecting data to answer research questions in this realm, but the ability to collect and store these data in an efficient manner at the local level is limited. By virtue of their training, neuropsychologists can play a key role in improving data collection quality. The purpose of this paper is to describe a …

Evaluation Of The Effects Of Passion Fruit Peel Flour (Passiflora Edulis Fo. Flavicarpa) On Metabolic Changes In Hiv Patients With Lipodystrophy Syndrome Secondary To Antiretroviral Therapy, Simone Marques, Rosana Libonati, Armando Sabaa-Srur, Rensheng Luo, Pushkar Shejwalkar, Kenji Hara, Thomas Dobbs, Robert Smith, Robert Smith

Chemistry & Biochemistry Faculty Works

No abstract provided.

Separate F-Type Plasmids Have Shaped The Evolution Of The H30 Subclone Of Escherichia Coli Sequence Type 131., Timothy J Johnson, Jessica L Danzeisen, Bonnie Youmans, Kyle Case, Katharine Llop, Jeannette Munoz-Aguayo, Cristian Flores-Figueroa, Maliha Aziz, Nicole Stoesser, Evgeni Sokurenko, Lance B. Price, James R Johnson

Environmental and Occupational Health Faculty Publications

The extraintestinal pathogenic Escherichia coli (ExPEC) H30 subclone of sequence type 131 (ST131-H30) has emerged abruptly as a dominant lineage of ExPEC responsible for human disease. The ST131-H30 lineage has been well described phylogenetically, yet its plasmid complement is not fully understood. Here, single-molecule, real-time sequencing was used to generate the complete plasmid sequences of ST131-H30 isolates and those belonging to other ST131 clades. Comparative analyses revealed separate F-type plasmids that have shaped the evolution of the main fluoroquinolone-resistant ST131-H30 clades. Specifically, an F1:A2:B20 plasmid is strongly associated with the H …

Trimethylated Lysine 4 At Histone 3 Shows The Same Circadian Rhythm At Promoters Of Diversely-Expressed Genes In Chlamydomonas Reinhardtii, Robyn M. Wilson

Masters Theses & Specialist Projects

Circadian clocks are biochemical mechanisms that allow eukaryotic and some prokaryotic organisms to coordinate their physiology with daily environmental changes. It enables organisms to increase their fitness by taking advantage of beneficial environmental conditions while also avoiding or restricting certain sensitive processes during harsh conditions. Similarly, post-translational histone modifications allow eukaryotic organisms to regulate gene expression in response to environmental or developmental factors. Some post-translational modifications of histones are associated with active transcription while others are associated with repressed transcription depending upon the location, type and degree of modification. Trimethylation of lysine 4 on the N-terminal tail of histone H3 …

Multiplexed Detection Of Double-Stranded Pathogenic Dna With Engineered Zinc Finger Proteins, Juhwa Kim

Masters Theses & Specialist Projects

The development of a new technology for the detection of doublestranded (ds) DNA enables multiple biomedical applications including identifying multiple pathogens simultaneously. We previously employed colorimetric SEquence-Enabled Reassembly with TEM-1 β-lacatamase (SEER-LAC) to detect specific bacterial DNA sequence. SEER-Lac consists of the two inactive β-lactamase fragments which of each attached to a zinc finger protein (ZFP) would reassemble into an active full-length enzyme upon ZFPs binding to its target DNA. Here, we engineered two pairs of ZFPs which of each recognizes shiga toxin in E. coli O157 and staphylococcal enterotoxin B in Staphylococus Aureus, respectively. Biotin was simply conjugated to …

Chemical Signaling In Asian Elephants (Elephas Maximus): Concentration Effects With Applications For Management And Conservation, Chase Andrew Ladue

Masters Theses & Specialist Projects

Asian elephants utilize two chemical signals that have been described to function in reproduction: (1) (Z)-7-dodecenyl acetate (Z7-12:Ac) is released by females near ovulation, and (2) frontalin is released by males around the time of musth. Signaling theory posits that the concentration at which either compound is emitted should have implications for the response of the receiver, varying with factors such as sex and reproductive experience. Here, the objectives were to: (1) investigate the effect of concentration on receiver chemosensory behavior in an effort to identify detection thresholds and concentrations of maximum response for reproductively experienced or inexperienced male and …

Effects Of Sleep Fragmentation On The Immune System Of Zebra Finches Using Cytokine Gene Expression, Laken N. Cooper

Masters Theses & Specialist Projects

Sleep loss is known to trigger an inflammatory response and increase serum corticosterone in both human and murine models. However, very little evidence is available on the potential effects of sleep loss in avian models. This study aims to construct a profile using cytokine gene expression data to determine how birds respond to sleep loss in a controlled environment. I investigated changes in pro-inflammatory (IL-1β and IL-6) and anti-inflammatory (IL-10) cytokine gene expression in the periphery (fat, liver, spleen, and heart) and brain (hypothalamus, hippocampus, and apical hyperpallium) in zebra finches exposed to a novel sleep fragmentation method. Serum corticosterone, …

Identification Of Collagen Iv Associated Proteins In Drsophila Using Genetics And Mass Spectrometry, Mayank S. Kapadia

Masters Theses & Specialist Projects

Metastatic cancer cells invade and spread to other locations by disrupting the basement membrane (BM). The membrane plays a major role during the normal development of an organism as well. In order to understand the invasion mechanism it is important to know about the interactions occurring between the proteins of the BM during normal development. This study concentrates on isolating and identifying the major factors associated with collagen IV, a major component of BM, during the third instar larval development of Drosophila. Western blot and mass spectrometry analysis revealed that collagen IV associates with various growth factors, signaling molecules, and …

Functional And Expression Analysis Of A Novel Basement Membrane Degrader In Drosophila Melanogaster, Christopher J. Fields

Masters Theses & Specialist Projects

The Srivastava Lab is focused on the identification and characterization of genes that play a role in basement membrane remodeling. Previously, we identified putative basement membrane degraders through a genetic screen. One such gene has been suggested to play a role in the maintenance of the stem cell niche in Drosophila melanogaster, but no other information about the role this gene plays in development or disease has been published. Here, data are presented from experiments utilizing Drosophila genetics and immunohistochemistry that provide important insights on the biological role of this gene.

Collagenase activity was up-regulated upon overexpression of this gene, …

Accuracy Of Commercial Fitness Trackers During High-Intensity Functional Training, Paige Wessel

Masters Theses & Specialist Projects

Commercially available fitness trackers have been found to accurately measure steps and caloric expenditure during walking and running activities. Circuit-style, highintensity functional training (HIFT) has become increasingly popular because it is inexpensive and effective in improving muscular strength and cardiovascular fitness. PURPOSE: To evaluate the accuracy of five accelerometers (ActiGraph GT3X, Nike Fuelband, Fitbit One, Fitbit Charge HR, and Jawbone UP Move) in estimating energy expenditure while performing an acute bout of HIFT. METHODS: Participants (n = 47) underwent baseline testing and at least 48 hours later, each participant completed the main test: a 15-minute workout consisting of 12 repetitions …

Using Zinc Finger Proteins As A Diagnostic Tool For The Detection Of A Cancer Biomarker, Anu Kini

Masters Theses & Specialist Projects

RASSF1A is a tumor suppressor gene which loses its function due to methylation of CpG islands on its promoter region. Detection of methylation leads to early diagnosis of cancer.

Zinc finger proteins are capable of detecting a specific DNA sequence and Methyl binding domain can bind to the methyl group on the CpG, using this idea mCpG SEER- Lac system makes use of a split protein, β-lactamase. Lac A attached to the ZFP and Lac B attached to the MBD protein. On binding to the DNA, the Lac A and Lac B come in close proximity with each other causing …

Impacts Of Habitat Fragmentation On The Cranial Morphology Of A Threatened Desert Fish (Cyprinodon Pecosensis), Michael Chaise Gilbert

Masters Theses & Specialist Projects

Drastic alterations to the North American Southwest’s hydrology have highly influenced resident fish communities. In New Mexico and Texas, the Pecos River has been severely altered as a result of water manipulation, isolating backwaters and various habitats that were once connected to the main river. Cyprinodon pecosensis (Pecos pupfish) has been highly impacted due to the effects of anthropogenic water manipulation, as well as species introductions. Cyprinodon pecosensis populations have become isolated and scattered, residing in sinkholes, remnant lakes, and static backwaters, thus creating numerous micropopulations. The purpose of this study was to assess the morphological variation in cranial features …

The Energy Expenditure Of Heavy Metal Drummers, Joshua T. Brown

Masters Theses & Specialist Projects

The purpose of this investigation is to examine the energy demand of heavy metal drummers during rehearsal in order to understand the physiological responses. This information may lead to a better understanding of energy expenditure and add to the compendium of physical activity.

The investigation consisted of eight apparently healthy 20 to 37-year-old males were recruited for this investigation. Information gathered during the drum test was average VO2, VO2peak, HR in beats per minute (bpm), metabolic equivalents (METs), and energy expenditure (EE) expressed in calories (kcals) per minute and per hour. Rating of perceived exertion (RPE) was used in addition …

Should Scientists Be Required To Use A Model-Based Solution To Adjust For Possible Distance-Based Detectability Bias?, Richard L. Hutto

Biological Sciences Faculty Publications

The most popular method used to gain an understanding of population trends or of differences in bird abundance among land condition categories is to use information derived from point counts. Unfortunately, various factors can affect one’s ability to detect birds, and those factors need to be controlled or accounted for so that any difference in one’s index among time periods or locations is an accurate reflection of differences in bird abundance and not differences in detectability. Avian ecologists could use appropriately sized fixed-area surveys to minimize the chance that they might be deceived by distance-based detectability bias, but the current …

Evaluating The Influences Of Karst Hydrogeology On Freshwater Harmful Algal Blooms In Kentucky Lakes, Robert T. Schaefer

Masters Theses & Specialist Projects

A problem exists in Nolin River Lake and Rough River Lake in Kentucky, due to the increasing prevalence of cyanobacterial-based harmful algal blooms (CyanoHABs) and the threats they pose to local communities. These lakes were developed as artificial reservoirs from embankment. Further complicating the issue, the lakes are located within a heavily karstified region and there exists no plan or method currently for monitoring or managing CyanoHABs in a karst region with regard to groundwater inputs to the lake systems or their tributaries. A mixture of techniques and analysis methods was used to determine the best way to monitor and …

Effects Of Acute And Chronic Interval Sprint Exercise Performed On A Manually Propelled Treadmill On Upper Limb Vascular Mechanics In Healthy Young Men., T Dylan Olver, Steph M Reid, Alan R Smith, Mair Zamir, Peter W R Lemon, M Harold Laughlin, J Kevin Shoemaker

Kinesiology Publications

Interval sprint exercise performed on a manually propelled treadmill, where the hands grip the handle bars, engages lower and upper limb skeletal muscle, but little is known regarding the effects of this exercise modality on the upper limb vasculature. We tested the hypotheses that an acute bout of sprint exercise and 6 weeks of training induces brachial artery (BA) and forearm vascular remodeling, favoring a more compliant system. Before and following a single bout of exercise as well as 6 weeks of training three types of vascular properties/methodologies were examined in healthy men: (1) stiffness of the entire upper limb …

Joint Survival Analysis Of Time To Drug Change And A Terminal Event With Application To Drug Failure Analysis Using Transplant Registry Data, Elizabeth Renouf, Charmaine Dean, David Bellhouse, Vivian Mcalister

Data and Test Instruments

Statistical approaches for drug effectiveness studies after liver transplant have used a survival model with changes in treatment as a time-dependent covariate. However, the approach requires that changes in the time-dependent covariate be unrelated to survival outcome. Usually this is not the case, as one drug may be discontinued and an alternative chosen due to the declining health status of the patient. Other approaches examine only subjects who remain on the same drug over a time window, which discards valuable data and may lead to biased effects since this excludes data related to early deaths and to individuals who perform …

Santa Clara Magazine, Volume 57 Number 3, Summer 2016, Santa Clara University

Santa Clara Magazine

26 - CAN’T THREAD A MOVING NEEDLE To tackle sexual assault on college campuses, a playwriting project comes to the screen. By Danae Stahlnecker ’15.

28 - MISSION CRITICAL When three students fell ill from meningitis-causing bacteria—which can be fatal—it meant the clock was ticking. And to get through this, it would take everybody’s help. By Harold Gutmann.

36 - “WHERE ARE THEY TAKING US?” A journal from the front lines of the Syrian refugee crisis in Greece. By Colleen Sinsky ’10.

40 - NO STRANGERS HERE Refugees, home, and work by Ameera Naguib ’16 from Jordan to Silicon Valley. …

Ecohydrologic Impacts Of Rangeland Fire On Runoff And Erosion: A Literature Synthesis, Frederick B. Pierson, C. Jason Williams

Reports

Fire can dramatically influence rangeland hydrology and erosion by altering ecohydrologic relationships. This synthesis presents an ecohydrologic perspective on the effects of fire on rangeland runoff and erosion through a review of scientific literature spanning many decades. The objectives are: (1) to introduce rangeland hydrology and erosion concepts necessary for understanding hydrologic impacts of fire; (2) to describe how climate, vegetation, and soils affect rangeland hydrology and erosion; and (3) to use examples from literature to illustrate how fire interacts with key ecohydrologic relationships. The synthesis is intended to provide a useful reference and conceptual framework for understanding and evaluating …

What Motivates High School Students To Take Precautions Against The Spread Of Influenza? A Data Science Approach To Latent Modeling Of Compliance With Preventative Practice, William L. Romine, Tanvi Banerjee, William R. Folk, Lloyd H. Barrow

Kno.e.sis Publications

– This study focuses on a central question: What key behavioral factors influence high school students’ compliance with preventative measures against the transmission of influenza? We use multilevel logistic regression to equate logit measures for eight precautions to students’ latent compliance levels on a common scale. Using linear regression, we explore the efficacy of knowledge of influenza, affective perceptions about influenza and its prevention, prior illness, and gender in predicting compliance. Hand washing and respiratory etiquette are the easiest precautions for students, and hand sanitizer use and keeping the hands away from the face are the most difficult. Perceptions of …

Nebline, July 2016

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Lancaster County Extension Board — Building Our Community Connection

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

Extension Calendar

and other extension news and events

Adgrl3 (Lphn3) Variants Are Associated With A Refined Phenotype Of Adhd In The Mta Study, Maria T. Acosta, James Swanson, Annamarie Stehli, Brooke Molina, The Mta Team

Neurology Faculty Publications

Background

ADHD is the most common neuropsychiatric condition affecting individuals of all ages. Long-term outcomes of affected individuals and association with severe comorbidities as SUD or conduct disorders are the main concern. Genetic associations have been extensively described. Multiple studies show that intronic variants harbored in the ADGRL3 (LPHN3) gene are associated with ADHD, especially associated with poor outcomes.

Methods

In this study, we evaluated this association in the Multimodal Treatment Study of children with ADHD (MTA), initiated as a 14-month randomized clinical trial of 579 children diagnosed with DSM-IV ADHD-Combined Type (ADHD-C), that transitioned to a 16-year prospective observational …

2016 Nebraska Farm Custom Rates, Part I, Roger Wilson, Jim Jansen

Department of Agricultural Economics: Faculty Publications

Every two years a survey of custom operators is conducted to determine the current rates charged for specific machinery operations. The survey is divided into two parts. Part I includes the spring and summer operations such as planting and harvesting of small grains, and Part II includes information about fall and miscellaneous operations.

The responses are grouped by Nebraska Agricultural Statistics Districts as shown on the map below (Figure 1). Custom rates reported include charges for use of necessary equipment, fuel, labor, and supplies such as baling wire or twine provided by the custom operator. Seed, fertilizer, and chemical costs …

Estimating Indoor Pm2.5 And Co Concentrations In Households In Southern Nepal: The Nepal Cookstove Intervention Trials, C. Chen, S. Zeger, P. Breysse, J. Katz, W. Checkley, F. Curriero, James Tielsch

Global Health Faculty Publications

High concentrations of household air pollution (HAP) due to biomass fuel usage with unvented, insufficient combustion devices are thought to be an important health risk factor in South Asia population. To better characterize the indoor concentrations of particulate matter (PM2.5) and carbon monoxide (CO), and to understand their impact on health in rural southern Nepal, this study analyzed daily monitoring data collected with DataRAM pDR-1000 and LASCAR CO data logger in 2980 households using traditional biomass cookstove indoor through the Nepal Cookstove Intervention Trial–Phase I between March 2010 and October 2011. Daily average PM2.5 and CO concentrations collected in area …