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Articles 120061 - 120090 of 255945

Full-Text Articles in Life Sciences

Predicting Post-Fire Change In West Virginia, Usa From Remotely-Sensed Data, Michael Strager P. Strager, Melissa Thomas-Van Gundy, Aaron E. Maxwell Nov 2016

Predicting Post-Fire Change In West Virginia, Usa From Remotely-Sensed Data, Michael Strager P. Strager, Melissa Thomas-Van Gundy, Aaron E. Maxwell

Journal of Geospatial Applications in Natural Resources

Prescribed burning is used in West Virginia, USA to return the important disturbance process of fire to oak and oak-pine forests. Species composition and structure are often the main goals for re-establishing fire with less emphasis on fuel reduction or reducing catastrophic wildfire. In planning prescribed fires land managers could benefit from the ability to predict mortality to overstory trees. In this study, wildfires and prescribed fires in West Virginia were examined to determine if specific landscape and terrain characteristics were associated with patches of high/moderate post-fire change. Using the ensemble machine learning approach of Random Forest, we determined that …

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U.S. Drought Monitor, November 22, 2016, Richard R. Heim Jr. Nov 2016

U.S. Drought Monitor, November 22, 2016, Richard R. Heim Jr.

United States Agricultural Commodities in Drought Archive

Drought map of the United States for November 22, 2016 (11/22/16) plus: United States crop areas experiencing drought (map), approximate percentage of crop located in drought by state (bar graph), and the percentage of crop area located in drought over the past 52 weeks (line graph) for corn, soybeans, hay, cattle, and winter wheat.

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Mutagenic Analysis Of Sh3 Binding Site In The Avian Chb6 Alloantigen, Rohini Bhattacharya Nov 2016

Mutagenic Analysis Of Sh3 Binding Site In The Avian Chb6 Alloantigen, Rohini Bhattacharya

College of Science and Health Theses and Dissertations

To effectively eliminate the variety of pathogens that an individual may encounter in their lifetime, the immune system has evolved to recognize many different antigens. Within adaptive immunity there are also safe guards where the self-reactive or defective cells are eliminated (1). The removal of such cells is by apoptosis, which is a form of cell suicide characterized by an orderly breakdown of the cell to limit the leakage of cytoplasmic components that could cause inflammation. Apoptosis can be initiated by signaling through specific cell surface molecules and is carried out by downstream mediators. While several model systems of apoptosis …

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Methylphenidate And Memory And Attention Adaptation Training For Persistent Cognitive Symptoms After Traumatic Brain Injury: A Randomized, Placebo-Controlled Trial, Brenna C. Mcdonald, Laura A. Flashman, David B. Arciniegas, Robert J. Ferguson, Li Xing, Jaroslaw Harezlak, Gwen C. Sprehn, Flora M. Hammond, Arthur C. Maerlender, Carrie L. Kruck, Karen L. Gillock, Kim Frey, Rachel N. Wall, Andrew J. Saykin, Thomas W. Mcallister Nov 2016

Methylphenidate And Memory And Attention Adaptation Training For Persistent Cognitive Symptoms After Traumatic Brain Injury: A Randomized, Placebo-Controlled Trial, Brenna C. Mcdonald, Laura A. Flashman, David B. Arciniegas, Robert J. Ferguson, Li Xing, Jaroslaw Harezlak, Gwen C. Sprehn, Flora M. Hammond, Arthur C. Maerlender, Carrie L. Kruck, Karen L. Gillock, Kim Frey, Rachel N. Wall, Andrew J. Saykin, Thomas W. Mcallister

Center for Brain, Biology, and Behavior: Faculty Publications

The purpose of this multicenter, prospective, randomized, placebo-controlled study was to evaluate and compare the efficacy of two cognitive rehabilitation interventions (Memory and Attention Adaptation Training (MAAT) and Attention Builders Training (ABT)), with and without pharmacologic enhancement (i.e., with methylphenidate (MPH) or placebo), for treating persistent cognitive problems after traumatic brain injury (TBI). Adults with a history of TBI at least four months prior to study enrollment with either objective cognitive deficits or subjective cognitive complaints were randomized to receive MPH or placebo and MAAT or ABT, yielding four treatment combinations: MAAT/MPH (N=17), ABT/MPH (N=19), MAAT/placebo (N=17), and ABT/placebo (N=18). …

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Ports, Prosperity, And Pests: Assessing The Threat Of Aquatic Invasive Species Introduced By Maritime Shipping Activity In Cuba, Charleen O'Brien Nov 2016

Ports, Prosperity, And Pests: Assessing The Threat Of Aquatic Invasive Species Introduced By Maritime Shipping Activity In Cuba, Charleen O'Brien

HCNSO Student Theses and Dissertations

Aquatic invasive species (AIS) are biological pollutants that cause detrimental ecological, economic, and sociological effects on non-native communities. With increasing globalization through maritime trade, coastal ports are vulnerable to AIS introductions transported by commercial vessels. As Cuba’s Port Mariel becomes a competitive transshipment hub within the Caribbean, it is essential to identify the potential threat that AIS may pose with a likely increase in shipping activity. It is equally important to understand the status of established AIS in Cuba and control measures presently being implemented by the country. This information can provide guidance for establishing or improving Cuban AIS preventative …

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Post-Transplantation Cyclophosphamide And Ixazomib Combination Rescues Mice Subjected To Experimental Graft-Versus-Host Disease And Is Superior To Either Agent Alone, Ahmad Samer Al-Homsi, Austin Goodyke, Michael Mclane, Sarah Abdel-Mageed, Kelli Cole, Marlee Muilenburg, Benjamin Feng Nov 2016

Post-Transplantation Cyclophosphamide And Ixazomib Combination Rescues Mice Subjected To Experimental Graft-Versus-Host Disease And Is Superior To Either Agent Alone, Ahmad Samer Al-Homsi, Austin Goodyke, Michael Mclane, Sarah Abdel-Mageed, Kelli Cole, Marlee Muilenburg, Benjamin Feng

Peer Reviewed Articles

Lapses in the prevention of graft-versus-host disease (GVHD) after allogeneic hematopoietic stem cell transplantation (HSCT) warrant novel approaches. Such approaches include, among others, the use of post-transplantation cyclophosphamide (PTC) and proteasome inhibitors. Although PTC alone consistently produces low rates of chronic GVHD, the incidence of acute GVHD remains significant. Inversely, prolonged post-transplantation administration of proteasome inhibitors carries a risk of paradoxical aggravation of GVHD. We examined whether the combination of cyclophosphamide and ixazomib addresses the limitations of each of these agents when used alone to prevent GVHD in mice subjected to allogeneic HSCT across MHC barriers. We chose ixazomib, an …

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Conditional Loss Of Pten In Myogenic Progenitors Leads To Postnatal Skeletal Muscle Hypertrophy But Age-Dependent Exhaustion Of Satellite Cells, Feng Yue, Pengpeng Bi, Chao Wang, Jie Li, Xiaoqi Liu, Shihuan Kuang Nov 2016

Conditional Loss Of Pten In Myogenic Progenitors Leads To Postnatal Skeletal Muscle Hypertrophy But Age-Dependent Exhaustion Of Satellite Cells, Feng Yue, Pengpeng Bi, Chao Wang, Jie Li, Xiaoqi Liu, Shihuan Kuang

Department of Animal Sciences Faculty Publications

Skeletal muscle stem cells (satellite cells [SCs]) are normally maintained in a quiescent (G0) state. Muscle injury not only activates SCs locally, but also alerts SCs in distant uninjured muscles via circulating fac- tors. The resulting GAlert SCs are adapted to regener- ative cues and regenerate injured muscles more effi- ciently, but whether they provide any long-term benefits to SCs is unknown. Here, we report that em- bryonic myogenic progenitors lacking the phospha- tase and tensin homolog (Pten) exhibit enhanced proliferation and differentiation, resulting in muscle hypertrophy but fewer SCs in adult muscles. Interest- ingly, Pten null SCs are predominantly …

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Mxa Is A Novel Regulator Of Endosome-Associated Transcriptional Signaling By Bone Morphogenetic Proteins 4 And 9 (Bmp4 And Bmp9), Huijuan Yuan, Pravin B. Sehgal Nov 2016

Mxa Is A Novel Regulator Of Endosome-Associated Transcriptional Signaling By Bone Morphogenetic Proteins 4 And 9 (Bmp4 And Bmp9), Huijuan Yuan, Pravin B. Sehgal

NYMC Faculty Publications

There is confusion about the role that IFN-α plays in the pathogenesis of pulmonary arterial hypertension (PAH) with different investigators reporting a causative or a protective role. There is now clear evidence in PAH pathogenesis for the involvement of BMP4 and BMP9 signaling, and its disruption by mutations in BMPR2. In the present study, we investigated MxA, an IFN-α-inducible cytoplasmic dynamin-family GTPase for effects on BMP4/9 signaling, including in the presence of PAH-disease-associated mutants of BMPR2. In human pulmonary arterial endothelial cells (HPAECs), IFN-α-induced endogenous as well as exogenously expressed MxA was associated with endosomes that aligned alongside microtubules and …

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The Difference Between Conscious And Unconscious Brain Circuits, Ezequiel Morsella, Zaviera Reyes Nov 2016

The Difference Between Conscious And Unconscious Brain Circuits, Ezequiel Morsella, Zaviera Reyes

Animal Sentience

Theoretical frameworks in which consciousness is an inherent property of the neuron must account for the contrast between conscious and unconscious processes in the brain and address how neural events can ever be unconscious if consciousness is a property of all neurons. Other approaches have sought answers regarding consciousness by contrasting conscious and unconscious processes and through investigating the complex interactions between the two kinds of processes, as occurs most notably in human voluntary action. In voluntary action, consciousness is associated most, not with motor control or low-level perceptual processing, but with the stage of processing known as action selection.


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Statistical Learning In Songbirds: From Self-Tutoring To Song Culture, Olga Fehér, Iva Ljubičić, Kenta Suzuki, Kazuo Okanoya, Ofer Tchernichovski Nov 2016

Statistical Learning In Songbirds: From Self-Tutoring To Song Culture, Olga Fehér, Iva Ljubičić, Kenta Suzuki, Kazuo Okanoya, Ofer Tchernichovski

Publications and Research

At the onset of vocal development, both songbirds and humans produce variable vocal babbling with broadly distributed acoustic features. Over development, these vocalizations differentiate into the well-defined, categorical signals that characterize adult vocal behaviour. A broadly distributed signal is ideal for vocal exploration, that is, for matching vocal production to the statistics of the sensory input. The developmental transition to categorical signals is a gradual process during which the vocal output becomes differentiated and stable. But does it require categorical input?We trained juvenile zebra finches with playbacks of their own developing song, produced just a few moments earlier, updated continuously …

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First Occurrence Of The Invasive Hydrozoan Gonionemus Vertens A. Agassiz, 1862 (Cnidaria: Hydrozoa) In New Jersey, Usa, John J. Gaynor, Paul A.X. Bologna, Dena J. Restaino, Christie Barry Nov 2016

First Occurrence Of The Invasive Hydrozoan Gonionemus Vertens A. Agassiz, 1862 (Cnidaria: Hydrozoa) In New Jersey, Usa, John J. Gaynor, Paul A.X. Bologna, Dena J. Restaino, Christie Barry

Department of Biology Faculty Scholarship and Creative Works

Gonionemus vertens A. Agassiz, 1862 is a small hydrozoan native to the Pacific Ocean. It has become established in the northern and southern Atlantic Ocean as well as the Mediterranean Sea. We report on the first occurrence of this species in estuaries in New Jersey, USA,and confirm species identification through molecular sequence analysis. Given the large number of individuals collected, we contend that this is a successful invasion into this region with established polyps. The remaining question is the vector and source of these newly established populations.

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An Investigation Into Spent Coffee Waste As A Renewable Source Of Bioactive Compounds And Industrially Important Sugars, Damhan Scully, Amit Jaiswal, Nissreen Abu-Ghannam Nov 2016

An Investigation Into Spent Coffee Waste As A Renewable Source Of Bioactive Compounds And Industrially Important Sugars, Damhan Scully, Amit Jaiswal, Nissreen Abu-Ghannam

Articles

Conventional coffee brewing techniques generate vast quantities of spent espresso grounds (SEGs) rich in lignocellulose and valuable bioactives. These bioactive compounds can be exploited as a nutraceutical or used in a range of food products, while breakdown of lignocellulose generates metabolizable sugars that can be used for the production of various high-value products such as biofuels, amino acids and enzymes. Response surface methodology (RSM) was used to optimize the enzymatic saccharification of lignocellulose in SEGs following a hydrothermal pretreatment. A maximum reducing sugar yield was obtained at the following optimized hydrolysis conditions: 4.97 g of pretreated SEGs, 120 h reaction …

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Increased Mitochondrial Superoxide In The Brain, But Not Periphery, Sensitizes Mice To Angiotensin Ii-Mediated Hypertension., Adam J. Case, Jun Tian, Matthew C. Zimmerman Nov 2016

Increased Mitochondrial Superoxide In The Brain, But Not Periphery, Sensitizes Mice To Angiotensin Ii-Mediated Hypertension., Adam J. Case, Jun Tian, Matthew C. Zimmerman

Journal Articles: Cellular & Integrative Physiology

Angiotensin II (AngII) elicits the production of superoxide (O2(•-)) from mitochondria in numerous cell types within peripheral organs and in the brain suggesting a role for mitochondrial-produced O2(•-) in the pathogenesis of hypertension. However, it remains unclear if mitochondrial O2(•-) is causal in the development of AngII-induced hypertension, or if mitochondrial O2(•-) in the absence of elevated AngII is sufficient to increase blood pressure. Further, the tissue specific (i.e. central versus peripheral) redox regulation of AngII hypertension remains elusive. Herein, we hypothesized that increased mitochondrial O2(•-) in the absence of pro-hypertensive stimuli, such as AngII, elevates baseline systemic mean arterial …

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Water Loss Rates And Desiccation Tolerances For Spiders And Crickets, Matthew Zach, Kevin E. Mccluney Nov 2016

Water Loss Rates And Desiccation Tolerances For Spiders And Crickets, Matthew Zach, Kevin E. Mccluney

Honors Projects

Despite the importance of water to living organisms, access varies across the globe with high variability over space and time. Seventy-five percent of the world’s freshwater alone is ice while 99% of unfrozen freshwater is underground (Winter et al. 1998). Understanding how terrestrial species respond to water availability and compensate for water stress can provide insight to their behavior, ecology and physiology. The goal of this research was to examine the differences in the evaporative water loss rates and desiccation tolerances of Hogna carolinensis and Acheta domesticus. First, an experiment was conducted to quantify the rate of evaporative water …

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2016 Bryophyte And Rare Vascular Plant Surveys In Western Nebraska, Robert F. Steinauer Nov 2016

2016 Bryophyte And Rare Vascular Plant Surveys In Western Nebraska, Robert F. Steinauer

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

The authors of the Flora of Nebraska (Bob Kaul, Dave Sutherland and Steve Rolfsmeier) are currently compiling data on bryophyte collections in Nebraska with the intent of publishing a Bryophyte Flora of Nebraska in the near future. The 2016 bryophyte and rare vascular plant surveys were conducted to provide additional information on bryophyte distributions in western Nebraska where bryophyte collection records are incomplete. Rare vascular plant occurrences noted during the bryophyte surveys were also documented to be included in the Nebraska Natural Heritage Program (NNHP) database.

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Hiv Glycoprotein Gp120 Impairs Fast Axonal Transport By Activating Tak1 Signaling Pathways, Sarah H. Berth, Nichole Mesnard-Hoaglin, Bin Wang, Hajwa Kim, Yuyu Song, Maria Sapar, Gerardo Morfini, Scott T. Brady Nov 2016

Hiv Glycoprotein Gp120 Impairs Fast Axonal Transport By Activating Tak1 Signaling Pathways, Sarah H. Berth, Nichole Mesnard-Hoaglin, Bin Wang, Hajwa Kim, Yuyu Song, Maria Sapar, Gerardo Morfini, Scott T. Brady

Publications and Research

Sensory neuropathies are the most common neurological complication of HIV. Of these, distal sensory polyneuropathy (DSP) is directly caused by HIV infection and characterized by length-dependent axonal degeneration of dorsal root ganglion (DRG) neurons. Mechanisms for axonal degeneration in DSP remain unclear, but recent experiments revealed that the HIV glycoprotein gp120 is internalized and localized within axons of DRG neurons. Based on these findings, we investigated whether intra-axonal gp120 might impair fast axonal transport (FAT), a cellular process critical for appropriate maintenance of the axonal compartment. Significantly, we found that gp120 severely impaired both anterograde and retrograde FAT. Providing a …

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Promoting The Kent State Ashtabula Wine Program Using Digital Commons: Challenges And Opportunities, Amy Thomas Nov 2016

Promoting The Kent State Ashtabula Wine Program Using Digital Commons: Challenges And Opportunities, Amy Thomas

Digital Commons + Northern Ohio User Group

Lessons learned and challenges explored in building the Ohio wine collection. Working with local winemakers and proprietors, the Ohio Wine Producers Association, Ohio Grape Industries, and the Viticulture Enology Science and Technology Alliance program coordinators, KSUA wine program and library staff have developed a DC site that chronicles the growth and impact of the industry statewide from the late 1960's to the present through photos, letters, newsletters, and interviews.

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Measuring Leaf Area Index (Lai) And Vegetation Growing Season Length To Better Understand The Interactions And Feedbacks Between Vegetation And The Changing Climate., Steven Schwarz Nov 2016

Measuring Leaf Area Index (Lai) And Vegetation Growing Season Length To Better Understand The Interactions And Feedbacks Between Vegetation And The Changing Climate., Steven Schwarz

Scholars Week

The purpose of this research was to measure and model vegetation growing seasons of deciduous tree species located at Murray State University Hancock Biological Station. The study began in September of 2015, and consisted of collecting leaf area index (LAI) from 3 defined locations using the Decagon LP80 Ceptometer, and Sentek soil probes to measure soil moisture/temperature. LAI data were collected weekly at various times, while soil temperature and moister recordings were collected in 60 minute intervals at depths of 5 to 55 cm in 10 cm increments. This study was important because it is essential to measure LAI and …

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Resolving The Hard Problem And Calling For A Small Miracle, Arthur S. Reber Nov 2016

Resolving The Hard Problem And Calling For A Small Miracle, Arthur S. Reber

Animal Sentience

With the exception of the commentary by Key, the commentaries on Reber have a common feature: the commenters feel, with varying levels of enthusiasm, that there is at least some virtue in the core assumption of the Cellular Basis of Consciousness (CBC) theory that consciousness (or subjectivity or sentience) accompanies the earliest forms of life. The model has two important entailments: (a) it resolves the (in)famous Hard Problem by redirecting the search for the biochemical foundations of sentience away from human consciousness; and (b) it reduces the need for an emergentist miracle to a far simpler scale than is currently …

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Different Prey Resources Suggest Little Competition Between Non-Native Frogs And Insectivorous Birds Despite Isotopic Niche Overlap, Robyn L. Smith, Karen H. Beard, Aaron B. Shiels Nov 2016

Different Prey Resources Suggest Little Competition Between Non-Native Frogs And Insectivorous Birds Despite Isotopic Niche Overlap, Robyn L. Smith, Karen H. Beard, Aaron B. Shiels

Wildland Resources Faculty Publications

Non-native amphibians often compete with native amphibians in their introduced range, but their competitive effects on other vertebrates are less well known. The Puerto Rican coqui frog (Eleutherodactylus coqui) has colonized the island of Hawaii, and has been hypothesized to compete with insectivorous birds and bats. To address if the coqui could compete with these vertebrates, we used stable isotope analyses to compare the trophic position and isotopic niche overlap between the coqui, three insectivorous bird species, and the Hawaiian hoary bat. Coquis shared similar trophic position to Hawaii amakihi, Japanese white-eye, and red-billed leiothrix. Coquis were about 3 ‰ …

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Genomes Of Gardnerella Strains Reveal An Abundance Of Prophages Within The Bladder Microbiome, Kema Malki, Jason W. Shapiro, Travis Kyle Price, Evann Elizabeth Hilt, Krystal Thomas-White, Trina Sircar, Amy B. Rosenfeld, Michael J. Zilliox, Alan J. Wolfe, Catherine Putonti Nov 2016

Genomes Of Gardnerella Strains Reveal An Abundance Of Prophages Within The Bladder Microbiome, Kema Malki, Jason W. Shapiro, Travis Kyle Price, Evann Elizabeth Hilt, Krystal Thomas-White, Trina Sircar, Amy B. Rosenfeld, Michael J. Zilliox, Alan J. Wolfe, Catherine Putonti

Bioinformatics Faculty Publications

Bacterial surveys of the vaginal and bladder human microbiota have revealed an abundance of many similar bacterial taxa. As the bladder was once thought to be sterile, the complex interactions between microbes within the bladder have yet to be characterized. To initiate this process, we have begun sequencing isolates, including the clinically relevant genus Gardnerella. Herein, we present the genomic sequences of four Gardnerella strains isolated from the bladders of women with symptoms of urgency urinary incontinence; these are the first Gardnerella genomes produced from this niche. Congruent to genomic characterization of Gardnerella isolates from the reproductive tract, isolates …

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Current Antibiotics And Future Herbal Extract Methods To Treat Methicillin-Resistant Staphylococcus Aureus (Mrsa): Focusing On Inhibition Of Penicillin-Binding Protein 2a (Pbp2a), Mgayya R. Makullah Nov 2016

Current Antibiotics And Future Herbal Extract Methods To Treat Methicillin-Resistant Staphylococcus Aureus (Mrsa): Focusing On Inhibition Of Penicillin-Binding Protein 2a (Pbp2a), Mgayya R. Makullah

Senior Honors Theses

Methicillin-Resistant Staphylococcus aureus (MRSA) has developed resistance towards a number of antibiotics. This resistance creates a challenge when trying to treat MRSA with a number of antibiotics. This is mainly caused by the penicillin-binding proteins 2a (PBP2a). PBP2a have significantly less affinity for beta-lactam antibiotics compared to the other penicillin-binding proteins (PBPs) expressed by non-resistant strains. New treatments involving a combination of antibiotics and herbal extracts are being developed and used to inactivate PBP2a, allowing the previous ineffective antibiotics to be more effective.

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Phytochrome B Integrates Light And Temperature Signals In Arabidopsis, Martina Legris, Cornelia Klose, E Sethe Burgie, Cecilia Costigliolo Rojas Rojas, Maximiliano Neme, Andreas Hiltbrunner, Philip A. Wigge, Eberhard Schäfer, Richard D. Vierstra, Jorge J. Casal Nov 2016

Phytochrome B Integrates Light And Temperature Signals In Arabidopsis, Martina Legris, Cornelia Klose, E Sethe Burgie, Cecilia Costigliolo Rojas Rojas, Maximiliano Neme, Andreas Hiltbrunner, Philip A. Wigge, Eberhard Schäfer, Richard D. Vierstra, Jorge J. Casal

Biology Faculty Research

Ambient temperature regulates many aspects of plant growth and development, but its sensors are unknown. Here, we demonstrate that the phytochrome B (phyB) photoreceptor participates in temperature perception through its temperature-dependent reversion from the active Pfr state to the inactive Pr state. Increased rates of thermal reversion upon exposing Arabidopsis seedlings to warm environments reduce both the abundance of the biologically active Pfr-Pfr dimer pool of phyB and the size of the associated nuclear bodies, even in daylight. Mathematical analysis of stem growth for seedlings expressing wild-type phyB or thermally stable variants under various combinations of light and temperature revealed …

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Otopathogenic Pseudomonas Aeruginosa Enters And Survives Inside Macrophages, Rahul Mittal, Christopher V. Lisi, Hansi Kumari, M'Hamed Grati, Patricia Blackwelder, Denise Yan, Chaitanya Jain, Kalai Mathee, Paulo H. Weckwerth, Xue Zhong Liu Nov 2016

Otopathogenic Pseudomonas Aeruginosa Enters And Survives Inside Macrophages, Rahul Mittal, Christopher V. Lisi, Hansi Kumari, M'Hamed Grati, Patricia Blackwelder, Denise Yan, Chaitanya Jain, Kalai Mathee, Paulo H. Weckwerth, Xue Zhong Liu

Biology Faculty Articles

Otitis media (OM) is a broad term describing a group of infectious and inflammatory disorders of the middle ear. Despite antibiotic therapy, acute OM can progress to chronic suppurative otitis media (CSOM) characterized by ear drum perforation and purulent discharge. Pseudomonas aeruginosa is the most common pathogen associated with CSOM. Although, macrophages play an important role in innate immune responses but their role in the pathogenesis of P. aeruginosa-induced CSOM is not known. The objective of this study is to examine the interaction of P. aeruginosa with primary macrophages. We observed that P. aeruginosa enters and multiplies inside human …

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Vdr-Ripk1 Interaction And Its Implications In Cell Death And Cancer Intervention, Waise Quarni Nov 2016

Vdr-Ripk1 Interaction And Its Implications In Cell Death And Cancer Intervention, Waise Quarni

USF Tampa Graduate Theses and Dissertations

Receptor interacting protein kinase 1 (RIPK1) is an enzyme acting downstream of tumor necrosis factor alpha to control cell survival and death. RIPK1 expression has been reported to cause drug resistance in cancer cells; but so far, no published studies have investigated the role of RIPK1 in vitamin D action. In the present study, we investigated whether RIPK1 played any role in 1,25-dihydroxyvitamin D3 (1,25D3)-induced growth suppression. In our studies, RIPK1 decreased the transcriptional activity of vitamin D receptor (VDR) in luciferase reporter assays independently of its kinase activity, suggesting a negative role of RIPK1 in 1,25D3 action. RIPK1 also …

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Smokejumper Obituary: Smith, Frank J. (North Cascades 1948), National Smokejumper Association Nov 2016

Smokejumper Obituary: Smith, Frank J. (North Cascades 1948), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

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Exploring Molecular Mechanisms Of Paradoxical Activation In The Braf Kinase Dimers: Atomistic Simulations Of Conformational Dynamics And Modeling Of Allosteric Communication Networks And Signaling Pathways, Amanda Tse, Gennady M. Verkhivker Nov 2016

Exploring Molecular Mechanisms Of Paradoxical Activation In The Braf Kinase Dimers: Atomistic Simulations Of Conformational Dynamics And Modeling Of Allosteric Communication Networks And Signaling Pathways, Amanda Tse, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

The recent studies have revealed that most BRAF inhibitors can paradoxically induce kinase activation by promoting dimerization and enzyme transactivation. Despite rapidly growing number of structural and functional studies about the BRAF dimer complexes, the molecular basis of paradoxical activation phenomenon is poorly understood and remains largely hypothetical. In this work, we have explored the relationships between inhibitor binding, protein dynamics and allosteric signaling in the BRAF dimers using a network-centric approach. Using this theoretical framework, we have combined molecular dynamics simulations with coevolutionary analysis and modeling of the residue interaction networks to determine molecular determinants of paradoxical activation. We …

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Volume 2, Chapter 4-7c: Invertebrates: Rotifer Taxa - Monogononta, Janice M. Glime Nov 2016

Volume 2, Chapter 4-7c: Invertebrates: Rotifer Taxa - Monogononta, Janice M. Glime

Bryophyte Ecology Subchapters

No abstract provided.

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Draft Genome Sequence For A Urinary Isolate Of Nosocomiicoccus Ampullae, Evann Elizabeth Hilt, Travis Kyle Price, Katherine Diebel, Catherine Putonti, Alan J. Wolfe Nov 2016

Draft Genome Sequence For A Urinary Isolate Of Nosocomiicoccus Ampullae, Evann Elizabeth Hilt, Travis Kyle Price, Katherine Diebel, Catherine Putonti, Alan J. Wolfe

Bioinformatics Faculty Publications

A draft genome sequence for a urinary isolate of Nosocomiicoccus ampullae (UMB0853) was investigated. The size of the genome was 1,578,043 bp, with an observed G+C content of 36.1%. Annotation revealed 10 rRNA sequences, 40 tRNA genes, and 1,532 protein-coding sequences. Genome coverage was 727× and consisted of 32 contigs, with an N50 of 109,831 bp.

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Assessment Of Olfactory Function In Maptassociated Neurodegenerative Disease Reveals Odor-Identification Irreproducibility As A Non-Disease-Specific, General Characteristic Of Olfactory Dysfunction, Katerina Markopoulou, Bruce A. Chase, Piotr Robowski, Audrey Strongosky, Ewa Narożańska, Emilia J. Sitek, Mariusz Berdynski, Maria Barcikowska, Matt C. Baker, Jarosøaw Søawek, Christine Klein, Katja Hückelheim, Meike Kasten, Zbigniew K. Wszolek Nov 2016

Assessment Of Olfactory Function In Maptassociated Neurodegenerative Disease Reveals Odor-Identification Irreproducibility As A Non-Disease-Specific, General Characteristic Of Olfactory Dysfunction, Katerina Markopoulou, Bruce A. Chase, Piotr Robowski, Audrey Strongosky, Ewa Narożańska, Emilia J. Sitek, Mariusz Berdynski, Maria Barcikowska, Matt C. Baker, Jarosøaw Søawek, Christine Klein, Katja Hückelheim, Meike Kasten, Zbigniew K. Wszolek

Biology Faculty Publications

Olfactory dysfunction is associated with normal aging, multiple neurodegenerative disorders, including Parkinson’s disease, Lewy body disease and Alzheimer’s disease, and other diseases such as diabetes, sleep apnea and the autoimmune disease myasthenia gravis. The wide spectrum of neurodegenerative disorders associated with olfactory dysfunction suggests different, potentially overlapping, underlying pathophysiologies. Studying olfactory dysfunction in presymptomatic carriers of mutations known to cause familial parkinsonism provides unique opportunities to understand the role of genetic factors, delineate the salient characteristics of the onset of olfactory dysfunction, and understand when it starts relative to motor and cognitive symptoms. We evaluated olfactory dysfunction in 28 carriers …

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