Life Sciences Commons^™

A Portable And Automatic Biosensing Instrument For Detection Of Foodborne Pathogenic Bacteria In Food Samples, Zhuo Zhao

Graduate Theses and Dissertations

Foodborne diseases are a growing public health problem. In recent years, many rapid detection methods have been reported, but most of them are still in lab research and not practical for use in the field. In this study, a portable and automatic biosensing instrument was designed and constructed for separation and detection of target pathogens in food samples using nanobead-based magnetic separation and quantum dots (QDs)-labeled fluorescence measurement. The instrument consisted of a laptop with LabVIEW software, a data acquisition card (DAQ), a fluorescent detector, micro-pumps, stepper motors, and 3D printed tube holders. First, a sample in a syringe was …

A Study Of Short-Season Winter Cover Crops For Organic High Tunnel Production Systems, Luke Riley Freeman

Graduate Theses and Dissertations

This two-year study investigated short-season winter cover crops to improve soil quality and growth of subsequent vegetable crops in an organic high tunnel production system. Five winter cover crop treatments including a nontreated control, Austrian winter peas (Pisum arvense), bell beans (Vicia faba), mustard (Brassica juncea cv. Kodiak), and Daikon radish (Raphanus sativus var. longipinnatus) were grown in a high tunnel in a randomized complete block design from mid-November to mid-March, mowed and incorporated into the soil, and followed by a succession of vegetable crops including tomato (Lycopersicon lycopersicum, cv. ‘Plum Dandy’) and broccoli (Brassica oleracea var. italica, cv. ‘Bay …

Nuclear Factor [Erythroid-Derived 2]-Like 2’S (Nfe2l2) Gene Expression In Feed Efficiency And Oxidative Stress In Avian Muscle, Devin Wayne Cook

Graduate Theses and Dissertations

Oxidative stress may play a role in the phenotypic expression of feed efficiency (FE). The transcription factor NFE2L2 (nuclear factor erythroid-derived 2-like 2) coordinates antioxidant response to oxidative stress and its activity is tightly regulated in part by KEAP1 (Kelch like-ECH protein 1) and the E3 ligase CUL3 (Cullin3). Thus, one objective was to determine mRNA expression of NFE2L2, KEAP1, and CUL3 as well as three antioxidant targets [glutathione peroxidase (GPx-1), superoxide dismutase 1 (SOD1), and superoxide dismutase 2 (SOD2)] in breast muscle of immature pedigree broiler males (8 wk), immature Japanese quail males (4 wk) divergently selected for high …

Effects Of Fermentation By Yeast And Amylolytic Lactic Acid Bacteria On Grain Sorghum Protein Content And Digestibility, Christina Day

Graduate Theses and Dissertations

Grain sorghum is an underutilized crop despite many advantages to its cultivation. A drought-tolerant plant with many pest-resistant cultivars, its applications are limited by problems with nutrient availability, particularly protein digestibility. Digestibility of grain sorghum protein is reduced by antinutritional compounds in the grain like tannins and phytates, and by moist-heat cooking. Some of these concerns can be mitigated by how the grain is processed. Fermentation is one processing method that can improve digestibility. Fermentation can also concentrate protein in a substrate. In this experiment, grain sorghum was subjected to different treatments and used as a substrate for yeast fermentation. …

Liming Characteristics Of A High-Calcium, Dry Flue Gas Desulfurization By-Product And Its Effects On Runoff Water Quality, Jason Richard Burgess-Conforti

Graduate Theses and Dissertations

In 2013, only 37% of the 32 million Mg of flue gas desulfurization (FGD) by-products generated in the United States were reused beneficially. If FGD by-products could be used as a beneficial soil amendment, millions of megagrams may be diverted away from surface impoundments and landfills. The purpose of this research was to identify the liming characteristics of a high-Ca dry FGD (DFGD) by-product in comparison to a Class-C fly ash (FA) and reagent-grade CaCO3, and to evaluate the effects of land application to a managed grassland on runoff, plant, and soil quality. Liming characteristics were determined by measuring the …

Effects Of Acute Heat And Oxidative Stress On The Hepatic Expression Of Orexin And Its Related Receptors, Stephanie Khaldi

Graduate Theses and Dissertations

It is widely known that orexin A and B peptides as well as their receptors are expressed in the hypothalamus and distributed throughout the central nervous system, but there have been few studies regarding its presences in other parts of the body. There is now evidence that orexin (ORX) and its receptors (ORXR1/2) are present in the avian liver; however, their regulation under different environmental conditions is still unknown. In the current study, we sought to determine the effects of heat and oxidative stress using hydrogen peroxide (H2O2) and 4-hydroxynonenal (4-HNE) on the hepatic expression of ORX and ORXR1/2 in …

Effect Of Light Intensity On Production Parameters And Feeding Behavior Of Broilers, Maurice Raccoursier Frost

Graduate Theses and Dissertations

This project was performed in two parts. The first was focused on light intensity as it affects performance. A randomized complete block design (RCBD) was performed. Broilers, Cobb 500 (n = 1584) were housed in 3 commercial houses (121.9 x 12.2 m). In each house birds were randomized and placed in 72 pens of 121.9 x 121.9 cm (22 bird/pen, males and females). All the treatment groups were provided with 24h light (L) during the first week and then 18L:6Dark (D) and 20 lux from day 7 to 14. The 3 intensity treatments of 5 lux (lx), 10 lx and …

Successful Secondary Agricultural Programs Outside The Classroom: A View Of Champions, Andrew Bolton

Graduate Theses and Dissertations

The purpose of this study was to study select secondary agricultural education programs and determine common traits among these programs which lead them to be successful in a number of different areas including: Career Development Events (CDE) winners, Leadership Development Events (LDE) winners, agricultural science fair winners, chapters of elected state FFA officers, proficiency award winners, national chapter awards, and state fair market show results. This study utilized a modified Delphi approach consisting of three rounds to reach consensus on the importance of traits related to successful SAE and FFA programs. Many traits were identified but the most important traits …

Contribution Of Lianas To Plant Area Index And Canopy Structure In A Panamanian Forest, M. Elizabeth Rodríguez-Ronderos, Gil Bohrer, Arturo Sanchez-Azofeifa, Jennifer S. Powers, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Lianas are an important component of tropical forests, where they reduce tree growth, fecundity, and survival. Competition for light from lianas may be intense; however, the amount of light that lianas intercept is poorly understood. We used a large-scale liana-removal experiment to quantify light interception by lianas in a Panamanian secondary forest. We measured the change in plant area index (PAI) and forest structure before and after cutting lianas (for 4 yr) in eight 80 m × 80 m plots and eight control plots (16 plots total). We used ground-based LiDAR to measure the 3-dimensional canopy structure before cutting lianas, …

The Relationship Between Lead In Groundwater And Elementary School Students' Academic Performance In Missouri, Lynnette Xiangling Li

Graduate Theses/Dissertations

Lead exposure can come from various sources, e.g., lead mines, industrial areas, and lead based paint. Missouri has more than 4,128 lead mines. Lead is a neurotoxin. The objectives of the study were to investigate i) the spatial relationship between lead mines and lead distribution in groundwater, ii) the statistical impact of lead in groundwater on students' Missouri Assessment Program (MAP) scores, and iii) the geographic variations of lead's impact on students' MAP scores. Geographic Information Science spatial analysis tools were used to analyze the concentration of lead in groundwater within school districts in Missouri. Regression analysis was utilized to …

Analysis Of Rna Expression Of Normal And Cancer Tissues Reveals High Correlation Of Cop9 Gene Expression With Respiratory Chain Complex Components, Christina A. Wicker, Tadahide Izumi

Toxicology and Cancer Biology Faculty Publications

BACKGROUND: The COP9 signalosome, composed of eight subunits, is implicated in cancer genetics with its deneddylase activity to modulate cellular concentration of oncogenic proteins such as IkB and TGFβ. However, its function in the normal cell physiology remains elusive. Primarily focusing on gene expression data of the normal tissues of the head and neck, the cancer genome atlas (TCGA) database was used to identify groups of genes that were expressed synergistically with the COP9 genes, particularly with the COPS5 (CSN5), which possesses the catalytic activity of COP9.

RESULTS: Expressions of seven of the COP9 genes (COPS2, COPS3, COPS4, COPS5, COPS6, …

Characterization Of Ground Nozzles For Pesticide Applications, Ryan Henry

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Pesticide applications are a common component of crop production systems in the United States (US). For row crop systems (e.g. corn, soybean, or wheat), pesticides are applied by ground, aerial, or chemigation methods. The exact method of pesticide delivery is not universally regulated/ prescribed in the US, and the equipment and application technique are largely defined by the individual applicator. A wide variety of choices and decisions must be made by applicators to result in a successful pesticide application. Examples of these choices include proper active ingredient(s), carrier volume and equipment (e.g. nozzle type, spacing, and operating pressure) selection while …

Exploration Of Student Biodiversity Knowledge And Decision-Making For A Wildlife Conservation Socioscientific Issue, Ashley R. Alred

School of Natural Resources: Dissertations, Theses, and Student Research

Global biodiversity, a foundation for ecosystem function, is diminishing at a rate unprecedented in the last 50 years. Biodiversity loss and ecosystem services deterioration is linked to increased food insecurity, reduced water quality and availability, decreased energy security, higher economic losses and human suffering (Millennium Ecosystem Assessment, 2005). Consequently, educators should invest in supporting students in their development of ecological understanding and formal decision-making skills so they are equipped with meaningful tools they can use as scientifically literate citizens. To contribute to that mission, this study seeks to explore student 1) comprehension and explanation of biodiversity concepts and 2) decision-making …

Reexamining Chronic Toxoplasma Gondii Infection: Surprising Activity For A "Dormant" Parasite, Anthony P. Sinai, Elizabeth A. Watts, Animesh Dhara, Robert D. Murphy, Matthew S. Gentry, Abhijit R. Patwardhan

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Purpose of Review

Despite over a third of the world’s population being chronically infected with Toxoplasma gondii, little is known about this largely asymptomatic phase of infection. This stage is mediated in vivo by bradyzoites within tissue cysts. The absence of overt symptoms has been attributed to the dormancy of bradyzoites. In this review, we reexamine the conventional view of chronic toxoplasmosis in light of emerging evidence challenging both the nature of dormancy and the consequences of infection in the CNS.

Recent Findings

New and emerging data reveal a previously unrecognized level of physiological and replicative capacity of bradyzoites …

Murine Models Of Splenic Marginal Zone Lymphoma: A Role For Cav1?, Chelsey L. Patten, Christine E. Cutucache

Biology Faculty Publications

Dozens of murine models of indolent and aggressive B-cell lymphomas have been generated to-date. These include those manifesting chronic lymphocytic leukemia (CLL), diffuse large B-cell lymphoma (DLBCL) as well as xenografts of mantle cell lymphoma (MCL). These models have led to an improved understanding of disease etiology, B-cell biology, immunomodulation, and the importance of the tumor microenvironment. Despite these efforts in CLL, DLBCL, and MCL, considerably little progress toward a model of splenic marginal zone lymphoma (SMZL) has been accomplished. Herein, we describe the similarities and differences between CLL, MCL, and SMZL, and highlight effective murine models that mimic disease …

It’S Complicated: Does Food Web Structure Affect Detrital Processing In Streams?, Stephen H. Tentinger

Biology Theses

Trophic cascades involve powerful feeding interactions that can alter the flow of energy and the abundance of species in an ecosystem. In western NY streams, the negative impacts of a new benthic invertivore, the round goby (Neogobius melanostomus) is altering benthic community structure and leaf litter decomposition. Streams with round gobies have a reduced abundance of shredders and slower leaf decay than streams without gobies. However, crayfish, as shredders of leaf litter, may be large or aggressive enough to avoid predation by round gobies. I used a 30-day full factorial field experiment with blocks to determine if round gobies affected …

Influence Of Ph And Acidic Side Chain Charges On The Behavior Of Designed Model Peptides In Lipid Bilayer Membranes, Venkatesan Rajagopalan

Graduate Theses and Dissertations

The molecular properties of transmembrane proteins and their interactions with lipids regulate biological function. Of particular interest are interfacial aromatic residues and charged residues in the core helix whose functions range from stabilizing the native structure to regulating ion channels. This dissertation addresses the pH dependence and influence of potentially negatively charged tyrosine, glutamic acid or aspartic acid side chains. We have employed GWALP23 (acetyl-GGALW5LALALALALALALW19LAGA-amide) as favorable host peptide framework. We have substituted W5 with Tyr (Y5GWALP23) and Leu residues with Glu (L12E, L14E or L16E) or Asp (L14D or L16D), and have incorporated specific 2H-labeled alanine residues within the …

To Boldly Go: Boldness Predicts Behavior And Survivorship Of A Critical Prey Species, Zoe Katherine Tinkle

Boise State University Theses and Dissertations

Understanding population dynamics is at the core of conservation biology. However, our understanding of the mechanisms driving population dynamics remains unclear in many cases. Animal behavior in response to biotic and abiotic stressors is an important driver of these population dynamics and varies both within- and among-individuals in a population. Consistent differences in behavior among individuals within a population are referred to as personality traits. Boldness, a personality trait representing the willingness of an individual to engage in risky behavior, may help predict individual and community-level consequences, such as survivorship. Here, we investigated the inter- and intra-individual variation in risk-taking …

Barn Owls (Tyto Alba) Crossing The Road - Examining The Interplay Among Occupancy, Behavior, Habitat Selection, And Roadway Mortality In Southern Idaho, Tempe Regan

Boise State University Theses and Dissertations

Barn Owls (Tyto alba) are killed by vehicle collisions in greater numbers than any other North American bird of prey. Interstate-84 (I-84) in southern Idaho, USA has among the world’s highest known rates of Barn Owl-vehicle collisions. Little is known about Barn Owl occupancy in this region, so it is unclear if owls are killed in proportion to their abundance, or if they are equally abundant in segments with lower mortality and somehow escape collisions. Furthermore, studies of Barn Owl movements and behavior are limited. I was interested in understanding (1) factors that affect Barn Owl occupancy in …

Surviving Catastrophe: Resource Allocation And Plant Interactions Among The Mosses Of Mount St. Helens Volcano, Trevor David Williams

Dissertations and Theses

Mosses are some of the first colonizers to disturbed sites, yet their roles in early plant community structuring are not well understood. The primary succession zones of volcanoes provide opportunities to conduct natural experiments into how mosses contribute to early plant community formation, as well as how the unique environments found in such zones affect plant traits, particularly those associated with stress tolerance. Though plant community changes have been well-documented since Mount St. Helens (MSH) volcano erupted in 1980, the volcano's moss assemblages, their influence on other plants, and their potential roles in chemical-mediated competition and biogeochemical cycling have garnered …

Investigating The Practices And Needs Of Agricultural Researchers At The University Of Nebraska-Lincoln, Leslie M. Delserone, Andrea L. Dinkelman

University of Nebraska-Lincoln Libraries: Faculty Publications

University of Nebraska-Lincoln (UNL) Libraries was one of 19 libraries participating in a national study, initiated by Ithaka S+R, of the research practices and needs of agricultural researchers. Two UNL Libraries faculty members participated in this study by interviewing 11 UNL agricultural scholars during the summer of 2016. The ethnographic research approach revealed four core themes explored in this UNL-specific report: interdisciplinarity and collaborations; scientific communication practices; scientific research data; and challenges and opportunities. Illustrated by the sample of faculty comments presented here, the themes have direct implications for the UNL Libraries, while in other cases these point to concerns …

A Novel Codon-Optimized Siv Gag-Pol Immunogen For Gene-Based Vaccination, Catherine M. Crosby, Eric A. Weaver, Reeti Khare, Michael A. Barry

Nebraska Center for Virology: Faculty Publications

Simian immunodeficiency virus (SIV) is a robust pathogen used in non-human primates to model HIV vaccines. SIV encodes a number of potential vaccine targets. By far the largest and most conserved protein target in SIV is its gag-pol protein that bears many epitopes to drive multivalent immune T cell responses. While gag-pol is an attractive antigen, it is only translated after a frame shift between gag and pol with the effect that gag and pol are expressed at an approximate 10/1 ratio. The codon bias of native lentiviral genes are also mismatched with the abundance of tRNAs in mammalian cells …

Reproductive Ecology Of Greater Sage-Grouse In Strawberry Valley, Utah, Jared Jeffrey Baxter

Theses and Dissertations

Greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) are a species of conservation concern in the rangelands of western North America due to their dramatic decline over the last half century. Effective conservation and management of sensitive species requires an understanding of how species respond to management actions. We examined two aspects of the reproductive phases of sage-grouse: nest predation, and habitat selection by female sage-grouse with chicks. In Chapter 1, we developed resource selection functions to assess the influence of mechanical treatments of mountain big sagebrush (Artemisia tridentata vaseyana) on habitat selection by greater sage-grouse with chicks. …

The Effects Of Experimental Anterior Knee Pain On Bilateral Ground Reaction Forces During Running, Emily Rachel Cronk

Theses and Dissertations

The purpose of this study was to examine the independent effects of anterior knee pain (AKP) on bilateral ground reaction force (GRF) during running, with a focus on GRF applied to the uninvolved leg, which, prior to this study, had never been evaluated. Twelve volunteers completed three data collection sessions, that corresponded to one of three conditions (control, sham, and pain), in a counterbalanced order. For each session, subjects ran for five minutes. For the pain and sham sessions, respectively, hypertonic and isotonic saline were infused into the infrapatellar fat pad of the right leg during the running, while no …

The Role Of Viral Interleukin-6 In Tumor Development Of Kaposi's Sarcoma-Associated Herpesvirus Lymphomas, Rebecca A. Fullwood

Theses and Dissertations

Kaposi's sarcoma herpesvirus (KSHV) is a cancer-causing virus, primarily affecting AIDS patients. KSHV is found in 3-10% of the U.S. population and can cause a range of cancers in the highly immunosuppressed; these cancers include Kaposi's sarcoma, pleural effusion lymphoma (PEL) and multicentric Castleman's disease (MCD). The current techniques for treating these cancers are relatively ineffective, largely due to their inefficiency at targeting tumors formed by the infection. One protein produced by KSHV, the viral homolog of interleukin-6 (vIL-6), is thought to play a major role in tumor development post-infection. Here a novel animal model is implemented to study the …

Development Of Highly Variable Microsatellite Markers For The Tetraploid Silene Stellata (Caryophyllaceae), Juannan Zhou, Michele R. Dudash, Charles B. Fenster, Elizabeth A. Zimmer

Natural Resource Management Faculty Publications

Premise of the study:We designed and tested microsatellite markers for the North American native species Silene stellata (Caryophyllaceae) to investigate its population genetic structure and identify selection on floral design through male reproductive success.

Methods and Results: A total of 153 candidate microsatellite loci were isolated based on next-generation sequencing. We identified 18 polymorphic microsatellite loci in three populations of S. stellata, with di- or trinucleotide repeats. Genotyping results showed the number of alleles per locus ranged from six to 45 and expected heterozygosity ranged from 0.511 to 0.951. Five of these loci were successfully amplified in S. …

Partial Amino Acid Sequence Of Lipid Transfer Protein From Fennel (Foeniculum Vulgare) Seeds, Hasan Al-Shiyab, Caroline Aziz

Student Scholar Symposium Abstracts and Posters

Fennel (Foeniculum vulgare) is a biennial Egyptian medicinal plant with an aromatic odor that belongs to the family Apiaceae (Umbelliferae). Fennel seeds are commonly used in traditional medicine, as they are known to have anti-inflammatory, anti-fungal and anti-cancerous activities. The major constituents of the fennel plant are sugars, minerals, essential fatty acids, proteins and fibers. Although, there are numerous studies on the medicinal properties of essential oils of the fennel seeds, but there is limited data reported on the proteins and peptides. The aims of this project are to fully characterize the primary structure of proteins and to determine their …

Benthic Carbon Mineralization And Nutrient Turnover In A Scottish Sea Loch: An Integrative In Situ Study, Ronnie N. Glud, Peter Berg, Henrik Stahl, Andrew Hume, Morten Larsen, Bradley D. Eyre, Perran L.M. Cook

All Works

© 2016, The Author(s). Based on in situ microprofiles, chamber incubations and eddy covariance measurements, we investigated the benthic carbon mineralization and nutrient regeneration in a ~65-m-deep sedimentation basin of Loch Etive, UK. The sediment hosted a considerable amount of infauna that was dominated by the brittle star A. filiformis. The numerous burrows were intensively irrigated enhancing the benthic in situ O2 uptake by ~50 %, and inducing highly variable redox conditions and O2 distribution in the surface sediment as also documented by complementary laboratory-based planar optode measurements. The average benthic O2 exchange as derived by chamber incubations and the …

Investigating The Impact Of Green Exercise On Population Health And Well-Being In A Small Community In Ireland:A Novel Approach Using A Natural Laboratory Ecosystem., Nollaig O'Sullivan, Aoife Donnelly, Tadhg Macintyre, Giles Warrington

Articles

Green exercise is defined as undertaking physical activity whilst being directly exposed to nature (Pretty et al., 2005; 2007). Pretty et al. (2003) were among the first wave of researchers to investigate the synergistic benefits of incorporating physical activity and exposure to the natural environment to produce positive psychological affect. Over the past decade, investigations into the possible additive effects on well-being of green exercise and how it can be used as an influential tool to help combat the rising rate of both physical inactivity and non –communicable disease has gained prominence in scientific literature. However, there is still a …

Molecular Measurement Of Toxicity In Fish; Case Examples And Policy Implications, Jessica A. Freedman

Senior Honors Projects

Stormwater and oil are common urban contaminants that can be harmful to fish species. One way of recognizing exposed and impaired fish is by monitoring gene expression and gene induction. This study focused on the identification and validation of reference genes for measuring contaminant-induced changes in gene expression due to urban influence. In this study, reference genes (which are genes used to normalize data and remain consistent in varying exposures regardless of organism and tissue type) were established. Six genes were identified as reference genes (ef1a, wdtc1, mtm1, spop, rxrba and tuba1) from a longer list of potential …