Life Sciences Commons^™

The Promise And Pitfalls Of Β-Diversity In Ecology And Conservation, Jonathan A. Myers, Joseph A. Lamanna

Biology Faculty Research

A key challenge in ecology and conservation is to determine how processes at different scales create variation in community composition (β-diversity). In this issue, Oldén & Halme show that grazers increase β-diversity through multiple processes at different scales. We discuss how β-diversity can elucidate fundamental processes of community assembly, challenges in linking processes to patterns, and unresolved questions across scales.

Determination Of Plant Architecture And Component Phenotyping Based On Time-Lapse Image Analysis, Srinidhi Bashyam

School of Computing: Dissertations, Theses, and Student Research

Plant breeding and the development of new food production depend on accurate measurement of different phenotypes (observable physical traits) of a plant. The plant phenotypes play a very important role in the agronomic production. The successful computation of plant phenotypes largely depends on the determination of the architecture of the plant, i.e., the arrangement of its parts (leaves, stems, flowers, etc.) relative to each other, and how the size, shape, and positions of those parts change over time. Researchers and breeders extract valuable information from these types of data to make an informed decision on which individuals to advance to …

Indifference To Chaotic Motion May Be Related To Social Disinterest In Children With Autism, Joshua L. Haworth, Anastasia Kyvelidou, Wayne Fisher, Nicholas Stergiou

Journal Articles

Children with autism spectrum disorder tend to have little interest in the presence, actions, and motives of other persons. In addition, these children tend to present with a limited and overly redundant movement repertoire, often expressing hyperfixation and aversion to novelty. We explore whether this is related to a more fundamental lack of appreciation for various temporal dynamics, including periodic, chaotic, and aperiodic motion structures. Seven children with ASD (age, gender, and height matched with children without ASD) were asked to stand and watch the motion of a visual stimulus displayed on a large (55") video monitor. Gaze and posture …

Buckhorn Plantain Control In Irrigated Pastures, Allan Sulser, Ralph Whitesides, Cory Ransom

All Current Publications

This fact sheet describes Buckhorn plantain, a weed with increasing significance in Utah. It includes a management options, and test plot observations and results.

Southern Utah Grass-Fed Beef Production Costs And Returns, 2016, Kynda Curtis, Trevor Knudsen

All Current Publications

This fact sheet is intended to be a guide used to make production decisions, determine potential returns, and prepare business and marketing pans.

Northern Utah Grass-Fed Beef Production Costs And Returns, 2016, Kynda Curtis, Trevor Knudsen

All Current Publications

This fact sheet is intended to be a guide used to make production decisions, determine potential returns, and prepare business and marketing plans.

Peaches In The Garden, Tiffany Maughan, Brent Black, Andrea Simondi

All Current Publications

This fact sheet describes peaches and includes recommended cultivars for Utah, how to grow them; pests and disease;, and harvest, storage and use information.

Red Yucca (Hesperaloe Parvifolia) Use In Utah, Michael Caron, Taun Beddes

All Current Publications

This fact sheet describes Red yucca and its use in the landscape, including planting, care, and maintenance, varieties, and diseases and pests.

Northern Flicker - Biology And Damage Management, Nicki Frey, Steve Zanoni

All Current Publications

This fact sheet describes the northern flicker, a large woodpecker, It include how to identify it, sources of conflict with humans, and managing damage it may cause,

The Regeneration Of Aspen Stands In Southern Utah, Justin Britton, Justin Derose, Karen Mock, Darren Mcavoy

All Current Publications

This fact sheet describes research conducted at Utah State University that identified factors to improve the success of regenerating aspen in southern Utah. Evaluating past silvicultural regeneration treatments indicated that the presence of pre-harvest advance reproduction, site preparation by broadcast burning, and decreasing browsing pressure could increase the quantity of aspen regeneration. The outcomes are generalized into an easy-to-use model, the Aspen Pyramid, to facilitate decision-making regarding regenerating aspen.

The Biodiversity Of Gastrointestinal Nematodes In South African Wildlife, Chalis J. Bird

Theses, Dissertations, and Projects

In this study, I investigated the diversity of parasites found in cheetah and wild ungulates in South Africa in collaboration with the Samara Private Game Reserve in Graaff Reinet, South Africa. Scat samples were collected over a period of two months, from September November, 2014, and DNA was extracted on the preserve for gastrointestinal nematode analysis. Wildlife was tracked using radio telemetry, tracks, and sign, while habitat and host distribution were documented. The aim was to determine the community composition of gastrointestinal nematodes in the wildlife hosts through molecular identification and to examine the role of host habitat preference, geographical …

Antimicrobial Interventions Applied To Beef Sub-Primals For The Control Of Escherichia Coli And Their Impact On Ground Beef Quality, Kelly Ann Mccarty

Department of Animal Science: Dissertations, Theses, and Student Research

Due to their severe health implications, seven shiga toxin-producing E. coli (STEC) serotypes were declared adulterants by USDA-FSIS in raw, non-intact beef products. Small business beef processing facilities are being asked to implement an intervention on the beef sub-primals and trim they receive for ground beef production. This study evaluates the efficacy of reducing rifampicin-resistant E. coli (E. coli^Rif) using 4.5% lactic acid (LA), 2.5% Beefxide™ (BX), and 380 ppm peroxyacetic acid (PAA) when applied by dip, spray or electrostatic spray (ESS) to the mostly fat lateral surface and mostly lean medial surface of beef shoulder …

Winter Desiccation Prevention And Recovery In Turfgrass, Darrell James Michael

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Desiccating winters in the Northern Great Plains can lead to widespread turf death. This loss of turf results in poor aesthetics and can be financially burdensome. Financial implications include the cost of re-establishing turf and the loss of potential revenue from poor playing conditions in the spring which can both be devastating for financial success. The winter of 2013-2014 was particularly devastating, leaving many golf course superintendents re-evaluating their desiccation prevention management plans. There are many prevention practices available to turf managers that vary greatly in affordability, effectiveness, and labor. These prevention practices aim to prevent excessive water loss and …

H-Ns, Its Family Members And Their Regulation Of Virulence Genes In Shigella Species, Michael A. Picker, Helen J. Wing

Life Sciences Faculty Research

The histone-like nucleoid structuring protein (H-NS) has played a key role in shaping the evolution of Shigella spp., and provides the backdrop to the regulatory cascade that controls virulence by silencing many genes found on the large virulence plasmid. H-NS and its paralogue StpA are present in all four Shigella spp., but a second H-NS paralogue, Sfh, is found in the Shigella flexneri type strain 2457T, which is routinely used in studies of Shigella pathogenesis. While StpA and Sfh have been proposed to serve as “molecular backups” for H-NS, the apparent redundancy of these proteins is questioned by in vitro …

Arkansas Animal Science Department Report 2016, Paul Beck, Jason Apple, Shane Gadberry, Beth Kegley, Charles Rosenkrans Jr.

Arkansas Agricultural Experiment Station Research Series

No abstract provided.

Exploring Factors That Shape Small-Scale Farmers’ Opinions On The Adoption Of Eco-Friendly Nets For Vegetable Production, F. Vidogbéna, A. Adégbidi, R. Tossou, F. Assogba-Komlan, T. Martin, M. Ngouajio, S. Simon, L. Parrot, S. T. Garnett, K. K. Zander

All Peer-Reviewed Publications

If agro-ecological systems are to realize their potential as sustainable alternatives to conventional agricultural systems, innovation diffusion needs to be enhanced. We conducted surveys among 214 small-scale vegetable farmers in Benin, a food-deficit country in West Africa, on how they perceived the different attributes of eco-friendly nets (EFNs). The nets act as physical barriers against insects in vegetable production and so reduce pesticide use. Understanding farmer perceptions about new technologies helps reveal farmers’ propensity to adopt them. Intensity of attitude was measured on a Likert scale, and an ordered probit model was used to determine which characteristics of nets were …

Healthy Soil, Healthy Food, Misaki Abe, Alexander Ellison, Brandon Hicks, Echo Wooden

Environmental and Sustainability Studies Undergraduate Projects

No abstract provided.

Working For Veggies: A Workshare Program At The Grand Valley State University Sustainable Agriculture Project, Robin Gessner, Cassie Pataro, Maggie Tisdale, Hayley Thiele

Liberal Studies Undergraduate Research

Grand Valley State University’s Sustainable Agriculture Project – often abbreviated to the SAP – grows a wide variety of produce while teaching students about environmental and social issues surrounding food. However, the GVSU student body is generally unaware of the SAP’s purpose or existence. In addition, the food being grown at the SAP does not always end up in the hands of students, while at the same time many students have difficulties affording healthy foods. We sought to find a solution to all of these problems. Through multiple brainstorming processes and consultations with various stakeholders, we were able to create …

Preliminary Investigation Of Walking Motion Using A Combination Of Image And Signal Processing, Bradley Schneider, Tanvi Banerjee

Kno.e.sis Publications

We present the results of analyzing gait motion in first-person video taken from a commercially available wearable camera embedded in a pair of glasses. The video is analyzed with three different computer vision methods to extract motion vectors from different gait sequences from four individuals for comparison against a manually annotated ground truth dataset. Using a combination of signal processing and computer vision techniques, gait features are extracted to identify the walking pace of the individual wearing the camera as well as validated using the ground truth dataset. Our preliminary results indicate that the extraction of activity from the video …

The Effect Of Lupinus Albus And Calcium Chloride On Growth Performance, Body Composition, Plasma Biochemistry And Meat Quality Of Male Pigs Immunized Against Gonadotrophin Releasing Factor, Karen Moore, Bruce P. Mullan, Jae Cheol Kim, Frank R. Dunshea

Animal production and livestock research articles

Two hundred and ninety-four pigs were used to assess the effect of two ingredients (Lupinus albus (albus lupins) or a combination of calcium chloride and sodium tri-polyphosphate (mineral salts)) on growth performance, body composition and objective meat quality of pigs immunized against gonadotrophin releasing factor (immunocastrates) and entire male pigs in the late finishing phase. Pigs fed mineral salts ate less feed than those fed the control diet with no effect on growth rate (p > 0.05), backfat (p > 0.05) or fat deposition (p > 0.05). Pigs fed albus lupins had a reduced feed intake (p < 0.001 for all time periods), lower growth rate (p < 0.001 for all time periods), lower backfat (p < 0.005) and decreased fat deposition (p < 0.001 for all time periods) compared to those fed the control diet or mineral salts. From day (d) 0–28 pigs fed mineral salts had a better feed conversion ratio (p = 0.001) than those fed albus lupins who in turn had an improved feed conversion compared to the control diet. Immunocastrates had thicker backfat than entire males at the end of the experiment (p < 0.001), however, feeding albus lupins to immunocastrated males reduced backfat thickness to similar to entire males fed the control diet (p = 0.01). With the exception of the increased muscle pH at 45 min post-exsanguination in mineral salts and albus lupins compared with the control diet (p = 0.03) there was no effect of diet on objective pork quality. Pork from IC males had a higher ultimate pH (p < 0.001), was lighter (L*; p = 0.003), more yellow (p = 0.008) and had a higher drip loss (p < 0.001) compared to entire males. Albus lupins show potential in reducing the increase in feed intake and backfat associated with immunocastration. Mineral salts may be useful in situations where a reduction in feed intake and an improvement in feed conversion is desired and reducing fat deposition is not the objective.

Risk Assessment And Research Synthesis Methodologies In Food Safety: Two Effective Tools To Provide Scientific Evidence Into The Decision Making Process, Juan E. Ortuzar

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The food supply chain is a complex and diverse system. Some food products need minimum processing to reach the consumers, while others involve several different processes, countries and suppliers, can take several months to be on the table of the end consumer. Regarding food safety, the public health of consumers is at stake and the consequences of outbreaks could prove disastrous. This has been recognized as a matter of global importance for the food industry and authorities around the world since several efforts to improve quality, safety and trade of food have arisen since the early 1960s. The birth of …

Effects Of Enhancement Solution Ph On Fresh And Cooked Color Of Dark-Cutting Beef, Ryan Stackhouse

Graduate Theses and Dissertations

In two experiments, dark-cutting (DC) beef strip loins were used to test the effects of citric acid-enhancement pH on visual and instrumental color of fresh and cooked steaks. Dark cutting and normal pH strip loin were injected to 111% of raw product weight with pH 3.5, 4.0, 4.5, or 5.0 solutions by mixing citric acid in either 0.05% phosphate solution or tap water (Exp 1), or with pH 2.0, 2.5, 3.0, and 3.5 solutions made by mixing citric acid in either a 0.5% orthophosphate solution (PO4) or a 0.5% tripolyphosphate solution (STP) (Exp2). Loin sections were cut into 2.5-cm-thick steaks …

Exploring The Production Of Extracellular Matrix By Astrocytes In Response To Mimetic Traumatic Brain Injury, Addison Walker

Graduate Theses and Dissertations

Following injury to the central nervous system, extracellular modulations are apparent at

the site of injury, often resulting in a glial scar. Astrocytes are mechanosensitive cells, which can create a neuroinhibitory extracellular environment in response to injury. The aim for this research was to gain a fundamental understanding of the affects a diffuse traumatic brain injury has on the astrocyte extracellular environment after injury. To accomplish this, a bioreactor culturing astrocytes in 3D constructs delivered 150G decelerations with 20% biaxial strain to mimic a traumatic brain injury. Experiments were designed to compare the potential effects of media type, number of …

Quantitative Trait Loci (Qtl) For Salt Tolerance In Soybean And Physiological Response To Salt Stress During Early Growth Stage, Cindy Massiel Lopez Ramirez

Graduate Theses and Dissertations

Soybean is a major cash crop used as a source of high–quality protein and oil. Salt stress is one of the main abiotic stresses causing significant yield losses in soybean, which is considered a moderately salt–sensitive crop. Breeding selection is a promising strategy to improve salt tolerance as soybean germplasm display wide variation in response to salinity stress. However, the physiological and genetic mechanisms for salt tolerance are not quite clear. The discovery of novel QTL/genes associated with salt tolerance facilitates the development of tolerant cultivars through marker-assisted selection (MAS). The objectives of this study were: 1) identify/confirm QTL associated …

Quantitative Trait Loci Mapping, Genome-Wide Association Analysis, And Gene Expression Of Salt Tolerance In Soybean, Ailan Zeng

Graduate Theses and Dissertations

Salt stress is a common abiotic stress causing yield reduction in soybean. There are differential responses, namely tolerance (excluder) and intolerance (includer), among soybean germplasm. However, the genetic and physiological mechanism for salt tolerance is not clear. Identification of novel QTL for salt tolerance and genes that are differentially expressed under salt stress would help elucidate the salt tolerance mechanism and facilitate the development of salt tolerant cultivars through marker assisted selection (MAS). The objectives of this study were to identify new QTL or genes responsible for salt tolerance using three approaches: QTL mapping, association analysis, and RNA sequencing (RNA-seq). …

A Bifunctional Nanocomposites Based Electrochemical Biosensor For In-Field Detection Of Pathogenic Bacteria In Food, Meng Xu

Graduate Theses and Dissertations

This research focused on the application of electrochemical biosensors for the rapid detection of pathogenic bacteria, Escherichia coli O157:H7 and Salmonella Typhimurium, in foods. The possible presence of pathogenic bacteria in foods has always been a great threat to the wellbeing of people and the revenue of food companies. Therefore, the demand for rapid and sensitive methods to detect foodborne pathogens is growing. In this research, an impedimetric immunosensor was first developed for the rapid detection of E. coli O157:H7 and S. Typhimurium in foods. It was based on the techniques of immunomagnetic separation, enzyme labelling, and electrochemical impedance spectroscopy …

Relationship Among Genetic And Physiological Biomarkers, And Horse Characteristics, Casey Orr

Graduate Theses and Dissertations

The objective of this study was to evaluate relationships among genetic and physiological biomarkers and phenotypic characteristics in horses. Three breeds (Quarter Horse, Thoroughbreds, Miniatures), and five genes of interest (leptin, ghrelin, cytochrome P450, glucocorticoid receptor, and lactate dehydrogenase) were the basis of the investigation. Genomic DNA was extracted from buffy coat samples of Quarter Horses (n = 21), Thoroughbreds (n = 26), and Miniatures (n = 34). Data were analyzed using MIXED MODEL procedures of SAS, with the main effects of breed and SNP genotype. Horse was the experimental unit, and dependent variables were classified as physical, cell differentials, …

Genetic Determinants Of Salmonella And Campylobacter Required For In Vitro Fitness, Rabindra Kumar Mandal

Graduate Theses and Dissertations

Non-typhoidal Salmonella (NTS) and Campylobacter play a major role in foodborne illness caused by the consumption of food contaminated by pathogens worldwide. A comprehensive understanding of the genetic factors that increase the survival fitness of these foodborne pathogens will effectively help us formulate mitigation strategies without affecting the nutrition ecology. The objective of this study was to identify the genetic determinants of Salmonella and Campylobacter that are required for fitness under various in vitro conditions. For the purpose, we used a high throughput Transposon sequencing (Tn-seq) that utilizes next generation sequencing (NGS) to screen hundreds of thousands of mutants simultaneously. …

Examination Of Pseudomonas Fluorescence As A Recombinant Expression Host: Cloning, Expression, And Chromatography, Ahmed K.Ali Elmasheiti

Graduate Theses and Dissertations

In an effort to expand the pool of bacterium useful for biotechnology applications, Pseudomonas fluorescens, a common gram negative microbe, was examined for its ability to function in a recombinant setting. P. fluorescens is ubiquitous in nature and was initially identified as a soil bacterium found in dirt and is typically associated with plant material. Past literature indicates that it shared characteristics common to Escherichia coli and Bacillus subtilis, including simple growth conditions and potential cloning vectors, providing motivation to look into both the upstream and downstream characteristics of this bacterium. First, it was demonstrated that P. fluorescens could be …

A Portable And Automatic Biosensing Instrument For Detection Of Foodborne Pathogenic Bacteria In Food Samples, Zhuo Zhao

Graduate Theses and Dissertations

Foodborne diseases are a growing public health problem. In recent years, many rapid detection methods have been reported, but most of them are still in lab research and not practical for use in the field. In this study, a portable and automatic biosensing instrument was designed and constructed for separation and detection of target pathogens in food samples using nanobead-based magnetic separation and quantum dots (QDs)-labeled fluorescence measurement. The instrument consisted of a laptop with LabVIEW software, a data acquisition card (DAQ), a fluorescent detector, micro-pumps, stepper motors, and 3D printed tube holders. First, a sample in a syringe was …