Life Sciences Commons^™

Expression Validation Of Mir-149-5p Targets In Prostate Cancer, Grant Wethington, Savita Singh

Undergraduate Research Posters 2017

Prostate cancer (PCa) is one of the leading causes of mortality in men. Current therapeutics for PCa are androgen depletion by castration or/and anti-androgen based treatments. Androgens are necessary for Androgen receptor (AR) to function as a transcription factor, AR then regulates the expression of genes which promote cancer cell proliferation. However, despite the therapeutic interventions recurred AR signaling, which is facilitated by the acquisition of mutations in AR and its amplification, cholesterol biosynthesis and alterations in the steroidogenesis continue promoting PCa carcinogenesis. Our research is focused on regulatory small RNA molecules know as microRNAs (miRNA) in PCa. Numerous miRNAs …

Phosphorus Variations In Lake Erie And Its Major Tributaries, Shiying Lu

Undergraduate Research Posters 2017

As a recurring symptom of eutrophication in Lake Erie, massive blooms of harmful algae pose a threat to safe drinking water supply and recreational water use. Causes of the recent re-eutrophication in the lake include changes in the tributary phosphorus loading and/or increases in the internal nutrient loading potentially mediated by the colonization of zebra and quagga mussels. This study is to investigate the phosphorus variations in different nearshore locations of the lake and its major tributaries for a better understanding of the lake's trophic conditions. A total of 21 water samples were collected from Lake Erie and its major …

Nuclear Genome Size Diversity Of Marine Invertebrate Taxa Using Flow Cytometric Analysis, Kyle Roebuck

Lopez Laboratory: Genomics & Microbial Data

No abstract provided.

The Lli Chronicle Special 40th Anniversary Edition, Nova Southeastern University

Lifelong Learning Institute Newsletters

No abstract provided.

Extinguishing A Learned Response In A Free-Ranging Gray Wolf (Canis Lupus), L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Learning and extinguishing learned behaviour (Thorn dike 1911; Skinner 1953) have been well studied in domestic dogs (Miklosi 2015). Some investigations of learning have been conducted with captive Gray Wolves (Canis lupus; Packard 2003; Frank 2011), including one study that included extinguishing learned behaviour (Cheney 1982). In addition, considerable research has been done comparing social learning be - tween dogs and captive wolves (Range and Viranyi 2013; Marshall-Pescini et al. 2015). However, to my knowledge, only Packard (2012) has studied learning in free-ranging wolves, and no one has investigated extinguishing a learned response in such wolves. The purpose of this …

Airborne Measurements Of Western U.S. Wildfire Emissions: Comparison With Prescribed Burning And Air Quality Implications, Xiaoxi Liu, L. Gregory Huey, Robert J. Yokelson, Vanessa Selimovic, Isobel J. Simpson, Markus Müller, Jose L. Jimenez, Pedro Campuzano-Jost, Andreas J. Beyersdorf, Donald R. Blake, Zachary Butterfield, Yonghoon Choi, John D. Crounse, Douglas A. Day, Glenn S. Diskin, Manvendra K. Dubey, Edward Fortner, Thomas F. Hanisco, Weiwei Hu, Laura E. King, Lawrence Kleinman, Simone Meinardi, Tomas Mikoviny, Timothy B. Onasch, Brett B. Palm, Jeff Peischl, Ilana B. Pollack, Thomas B. Ryerson, Glen W. Sachse, Arthur J. Sedlacek, John E. Shilling, Stephen Springston, Jason M. St. Clair

Chemistry and Biochemistry Faculty Publications

Wildfires emit significant amounts of pollutants that degrade air quality. Plumes from three wildfires in the western U.S. were measured from aircraft during the Studies of Emissions and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS) and the Biomass Burning Observation Project (BBOP), both in summer 2013. This study reports an extensive set of emission factors (EFs) for over 80 gases and 5 components of submicron particulate matter (PM1) from these temperate wildfires. These include rarely, or never before, measured oxygenated volatile organic compounds and multifunctional organic nitrates. The observed EFs are compared with previous measurements of temperate …

A Dual-Chamber Method For Quantifying The Effects Of Atmospheric Perturbations On Secondary Organic Aerosol Formation From Biomass Burning Emissions, Daniel S. Tkacik, Ellis S. Robinson, Adam Ahern, Rawad Saleh, Chelsea Stockwell, Patrick Veres, Isobel J. Simpson, Simone Meinardi, Donald R. Blake, Robert J. Yokelson, Albert A. Presto, Ryan C. Sullivan, Neil M. Donahue, Allen L. Robinson

Chemistry and Biochemistry Faculty Publications

Biomass burning (BB) is a major source of atmospheric pollutants. Field and laboratory studies indicate that secondary organic aerosol (SOA) formation from BB emissions is highly variable. We investigated sources of this variability using a novel dual-smog-chamber method that directly compares the SOA formation from the same BB emissions under two different atmospheric conditions. During each experiment, we filled two identical Teflon smog chambers simultaneously with BB emissions from the same fire. We then perturbed the smoke with UV lights, UV lights plus nitrous acid (HONO), or dark ozone in one or both chambers. These perturbations caused SOA formation in …

Analysis Of The Caenorhabditis Elegans Innate Immune Response To Coxiella Burnetii, James M. Battisti, Lance A. Watson, Myo T. Naung, Adam M. Drobish, Ekaterina Voronina, Michael F. Minnick

Biological Sciences Faculty Publications

The nematode Caenorhabditis elegans is well established as a system for characterization and discovery of molecular mechanisms mediating microbe-specific inducible innate immune responses to human pathogens. Coxiella burnetii is an obligate intracellular bacterium that causes a flu-like syndrome in humans (Q fever), as well as abortions in domesticated livestock, worldwide. Initially, when wild type C. elegans (N2 strain) was exposed to mCherry-expressing C. burnetii (CCB) a number of overt pathological manifestations resulted, including intestinal distension, deformed anal region and a decreased lifespan. However, nematodes fed autoclave-killed CCB did not exhibit these symptoms. Although vertebrates detect C. burnetii via TLRs, pathologies …

In Situ Measurements Of Water Uptake By Black Carbon-Containing Aerosol In Wildfire Plumes, Anne E. Perring, Joshua P. Schwarz, Milos Z. Markovic, David W. Fahey, Jose L. Jimenez, Pedro Campuzano-Jost, Brett D. Palm, Armin Wisthaler, Tomas Mikoviny, Glenn Diskin, Glen Sachse, Luke Ziemba, Bruce Anderson, Taylor Shingler, Ewan Crosbie, Armin Sorooshian, Robert Yokelson, Ru Shan Gao

Chemistry and Biochemistry Faculty Publications

Water uptake by black carbon (BC)-containing aerosol was quantified in North American wildfire plumes of varying age (1 to ~40 h old) sampled during the SEAC4RS mission (2013). A Humidified Dual SP2 (HD-SP2) is used to optically size BC-containing particles under dry and humid conditions from which we extract the hygroscopicity parameter, κ, of materials internally mixed with BC. Instrumental variability and the uncertainty of the technique are briefly discussed. An ensemble average κ of 0.04 is found for the set of plumes sampled, consistent with previous estimates of bulk aerosol hygroscopicity from biomass burning sources. The temporal evolution of …

Hovering In The Heat: Effects Of Environmental Temperature On Heat Regulation In Foraging Hummingbirds, Don R. Powers, Kathleen M. Langland, Susan M. Wethington, Sean D. Powers, Catherine H. Graham, Bret W. Tobalske

Faculty Publications - Department of Biological & Molecular Science

At high temperature (greater than 40°C) endotherms experience reduced passive heat dissipation (radiation, conduction and convection) and increased reliance on evaporative heat loss. High temperatures challenge flying birds due to heat produced by wing muscles. Hummingbirds depend on flight for foraging, yet inhabit hot regions. We used infrared thermography to explore how lower passive heat dissipation during flight impacts body-heat management in broad-billed (Cynanthus latirostris, 3.0 g), black-chinned (Archilochus alexandri, 3.0 g), Rivoli’s (Eugenes fulgens, 7.5 g) and blue-throated (Lampornis clemenciae, 8.0 g) hummingbirds in southeastern Arizona and calliope hummingbirds (Selasphorus calliope, 2.6 g) in Montana. Thermal gradients driving passive …

Genomic Vs. Non-Genomic Role Of The Ahr In Human Immunoglobulin Expression, Nasser Alhamdan

Browse all Theses and Dissertations

The immunoglobulin heavy chain gene (Igh) in various animal models is regulated by numerous regulatory elements including the 3’Igh regulatory region (3’IghRR). Several transcription factors are involved in modulating the 3’IghRR including the aryl hydrocarbon receptor (AhR). The AhR is a ligand-activated transcription factor that mediates the transcription of genes involved in the metabolism of environmental toxicants such as TCDD. TCDD binds AhR and regulates immunoglobulin (Ig) expression in B cells. This modulation appears to be directly mediated by binding of the AhR to dioxin response elements (DRE) within the 3’IghRR. In human B cells, IgG secretion inhibited by TCDD …

Digital Preservation And Access Of Natural Resources Documents, David Kulhavy, R Philip Reynolds, Daniel Unger, Steven H. Bullard, Matthew W. Mcbroom

Faculty Publications

Digitization and preservation of natural resource documents were reviewed and the current status of digitization presented for a North American university. It is important to present the status of the digitation process for natural resources and to advocate for increased collections of digital material for ease of reference and exchange of information. Digital collections need to include both published documents and ancillary material for research projects and data for future use and interpretation. The methods in this paper can be applied to other natural resource collections increasing their use and distribution. The process of decision making for documents and their …

Mechanisms Of Chinese Tallow (Triadica Sebifera) Invasion And Their Management Implications – A Review, Lauren S. Pile, G. Geoff Wang, Jeremy P. Stovall, Evan Siemann, Gregory S. Wheeler, Christopher A. Gabler

Faculty Publications

Ecosystems are under increasing stress from environmental change, including invasion by non-native species that can disrupt ecological processes and functions. Chinese tallow [Triadica sebifera (L.) Small] is a highly invasive tree species in southeastern US forests, prairies, and wetlands, and effectively managing this invasive species is a significant challenge for scientists and land managers. In this review, we synthesize the literature on invasion ecology and management of Chinese tallow. Our review suggests that the invaded range of Chinese tallow is currently limited by dispersal in many areas and by low temperatures and low soil moisture, and by high soil …

A Comparison Of Tree Growth In Loblolly Pine (Pinus Taeda) Plantations And Silvopasture Settings In East Texas, B. P. Oswald, Y. Weng, K. W. Farrish, J. Grogan, W. Kruckeberg, T. Barton

Faculty Publications

A desire by landowners to diversify potential income sources has resulted in an increased interest in silvopasture. This intensive land management option allows for the production of timber, livestock and/or forage on the same land base. With traditional plantation systems featuring loblolly pine (Pinus taeda) common in the western gulf coast region of the southeastern United States, comparisons of tree growth are needed to justify the use of silvopasture. This study evaluated the height, diameter and volume growth 13 years post-establishment of loblolly pine in both silvopasture and plantation spacings on a single site in east Texas. Individual trees in …

Site Index Prediction For Willow And Cherrybark Oaks In East Texas Bottomland Forests, B. P. Oswald, Y. Weng, G. D. Kronrad

Faculty Publications

Estimating site quality for a specific tree species is an important tool in forest management. While intensively managed pine species are often the focus of site quality studies using site index, hardwood species found in bottomland hardwood sites are often lacking in quality growth prediction equations. Two valuable hardwood species, willow oak (Quercus phellos) and cherrybark oak (Q. pagoda), are of interest for forest managers of east Texas bottomland sites. The objective of this study was to develop site index prediction equations and curves for these two species. Using height and age data from 267 cherrybark oaks and 460 willow …

Covert Narrative Capacity: Mental Life In Patients Thought To Lack Consciousness, Lorina Naci, Mackenzie Graham, Adrian M. Owen, Charles Weijer

Anatomy and Cell Biology Publications

Despite the apparent absence of external signs of consciousness, a significant proportion of behaviorally nonresponsive patients can respond to commands by willfully modulating their brain activity. However, little is known about the mental life of these patients. We discuss a recent innovative approach, which sheds light on the preserved cognitive capacities of these patients, including executive function, theory of mind, and the experience of affective states. This research represents a fundamental shift in our understanding of these patients, and has important implications for both their continued treatment and care. Moreover, this research marks out avenues for future inquiry into the …

Real-Time Interactive Tractography Analysis For Multimodal Brain Visualization Tool: Multixplore, Saeed M. Bakhshmand, Sandrine De Ribaupierre, Roy Eagleson

Anatomy and Cell Biology Publications

Most debilitating neurological disorders can have anatomical origins. Yet unlike other body organs, the anatomy alone cannot easily provide an understanding of brain functionality. In fact, addressing the challenge of linking structural and functional connectivity remains in the frontiers of neuroscience. Aggregating multimodal neuroimaging datasets may be critical for developing theories that span brain functionality, global neuroanatomy and internal microstructures. Functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) are main such techniques that are employed to investigate the brain under normal and pathological conditions. FMRI records blood oxygenation level of the grey matter (GM), whereas DTI is able …

The Roles Of Insulin-Like Growth Factors In Mesenchymal Stem Cell Niche, Amer Youssef, Doaa Aboalola, Victor K. M. Han

Anatomy and Cell Biology Publications

Many tissues contain adult mesenchymal stem cells (MSCs), which may be used in tissue regeneration therapies. However, the MSC availability in most tissues is limited which demands expansion in vitro following isolation. Like many developing cells, the state of MSCs is affected by the surrounding microenvironment, and mimicking this natural microenvironment that supports multipotent or differentiated state in vivo is essential to understand for the successful use of MSC in regenerative therapies. Many researchers are, therefore, optimizing cell culture conditions in vitro by altering growth factors, extracellular matrices, chemicals, oxygen tension, and surrounding pH to enhance stem cells self-renewal or …

An Evaluation Of Challenges And Opportunities For Western Heads East [2017], Felicia Krausert, Reshel Perera,, Spencer Yeung, Jacinta Mwachiro, Bob Kigen, Elizabeth Pham

Business and Social Enterprise

Western Heads East (WHE) is “a collaboration between Western staff, students, faculty, and African partners using probiotic food to contribute to health and sustainable development”. The primary objective of this program is to establish a sustainable grassroots social enterprise using the health benefits of probiotic yoghurt in order to improve health of Tanzanian community while empowering local women to become business owners and entrepreneurs. This report investigates the challenges, opportunities, local conditions and previous works to recommend a potential intervention that could support the sustainability and the intended value of probiotic yoghurt kitchens.

There are two main end users for …

Origins Of Thalamic And Cortical Projections To The Posterior Auditory Field In Congenitally Deaf Cats., Blake E Butler, Nicole Chabot, Andrej Kral, Stephen G Lomber

Psychology Publications

Crossmodal plasticity takes place following sensory loss, such that areas that normally process the missing modality are reorganized to provide compensatory function in the remaining sensory systems. For example, congenitally deaf cats outperform normal hearing animals on localization of visual stimuli presented in the periphery, and this advantage has been shown to be mediated by the posterior auditory field (PAF). In order to determine the nature of the anatomical differences that underlie this phenomenon, we injected a retrograde tracer into PAF of congenitally deaf animals and quantified the thalamic and cortical projections to this field. The pattern of projections from …

Within-Wing Isotopic (Δ2h, Δ13c, Δ15n) Variation Of Monarch Butterflies: Implications For Studies Of Migratory Origins And Diet, Keith A. Hobson, Tessa Plint, Eligio García Serrano, Xiomara Mora Alvarez, Isabel Ramirez, Fred J. Longstaffe

Earth Sciences Publications

Increasingly, stable isotope measurements are being used to assign individuals to broad geographic origins based on established relationships between animal tissues and tissue-specific isoscapes. In particular, the eastern North American population of the monarch butterfly (Danaus plexippus) has been the subject of several studies using established δ²H and δ¹³C wing-tissue isoscapes to infer natal origins of migrating and overwintering individuals. However, there has been no study investigating potential variance that can derive from sub-sampling different regions of the wings, especially those regions differing in pigmentation (orange versus black). Within-wing isotopic (δ²H, …

Stable Isotope Investigation Of The Migratory Behavior Of Silverhaired Bats (Lasionycteris Noctivagans) In Eastern North America, Erin E. Fraser, Darin Brooks, Fred J. Longstaffe

Earth Sciences Publications

We investigated the migratory movements of silver-haired bats (Lasionycteris noctivagans) across the eastern extent of the species’ range. We conducted stable hydrogen isotope analysis of fur samples (δ²H_fur) from museum specimens collected across latitudes and at all times of the year. We first used these data to estimate the timing of fur replacement and to develop a model associating δ²H_fur with that of local precipitation (δ²H_precip) at the location where fur replacement occurred. We then used this model to 1) identify individuals that had migrated …

Does Cold Activate The Drosophila Melanogaster Immune System?, Golnaz Salehipour-Shirazi, Laura V Ferguson, Brent J Sinclair

Biology Publications

Cold exposure appears to activate aspects of the insect immune system; however, the functional significance of the relationship between cold and immunity is unclear. Insect success at low temperatures is shaped in part by interactions with biotic stressors, such as pathogens, thus it is important to understand how and why immunity might be activated by cold. Here we explore which components of the immune system are activated, and whether those components differ among different kinds of cold exposure. We exposed Drosophila melanogaster to both acute (2h, -2°C) and sustained (10h, -0.5°C) cold, and measured potential (antimicrobial peptide expression, phenoloxidase activity, …

Cold Tolerance Of Third-Instar Drosophila Suzukii Larvae., Ruth Jakobs, Banafsheh Ahmadi, Sarah Houben, Tara D Gariepy, Brent J Sinclair

Biology Publications

Drosophila suzukii is an emerging global pest of soft fruit; although it likely overwinters as an adult, larval cold tolerance is important both for determining performance during spring and autumn, and for the development of temperature-based control methods aimed at larvae. We examined the low temperature biology of third instar feeding and wandering larvae in and out of food. We induced phenotypic plasticity of thermal biology by rearing under short days and fluctuating temperatures (5.5-19°C). Rearing under fluctuating temperatures led to much slower development (42.1days egg-adult) compared to control conditions (constant 21.5°C; 15.7days), and yielded larger adults of both sexes. …

Immune Profiles Vary Seasonally, But Are Not Significantly Related To Migration Distance Or Natal Dispersal, In A Migratory Songbird, Tosha R. Kelly, Heather L. Macgillivray, Keith A. Hobson, Scott A. Macdougall-Shackleton, Elizabeth A. Macdougall-Shackleton

Biology Publications

A central tenet of ecoimmunology is that an organism’s environment shapes its optimal investment in immunity. For example, the benefits of acquired (relatively pathogen-specific) versus innate (non-specific) immune defences are thought to vary with the risk of encountering familiar versus unfamiliar pathogens. Because pathogen communities vary geographically, individuals that travel farther during seasonal migration or natal dispersal are predicted to have higher exposure to novel pathogens, and lower exposure to familiar pathogens, potentially favoring investment in innate immunity. During the breeding season, migratory animals’ exposure to familiar pathogens should increase, potentially favoring investment in acquired immunity. We hypothesized that song …

Impact Of Age On Cerebrovascular Dilation Versus Reactivity To Hypercapnia., Nicole S Coverdale, Mark B Badrov, J Kevin Shoemaker

Kinesiology Publications

This study quantified the effect of age on cerebrovascular reactivity and cerebrovascular conductance while accounting for differences in grey matter volume in younger (YA: n = 12; 24 ± 4 years, six females) and older adults (OA: n = 10; 66 ± 7 years; five females). Cerebral blood flow velocity (CBFV; transcranial Doppler) in the middle cerebral artery (MCA), MCA cross-sectional area (CSA), intracranial volumes (magnetic resonance imaging), and mean arterial pressure (MAP; Finometer), were measured under normocapnic and hypercapnic (6% carbon dioxide) conditions. Cerebral blood flow (CBF) was quantified from CBFV and MCA CSA and normalized to grey matter …

Impact Of Ground Water Depletion On The Mesquite Community At Edwards Air Force Base, Western Mojave Desert, California, Jonathan E. Campbell, M. Rasoul Sharifi, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

Edwards Air Force Base (EAFB) provides a habitat refugium for mesquite woodlands in the western Mojave Desert of the Antelope Valley. Although many mesquite communities in the arid southwest are considered invasive as they reduce the extent of grazing lands, the community at EAFB is composed primarily of large, widely spaced trees that provide food and shelter for local wildlife species and recreational opportunities for base personnel. Unfortunately, the range of these mesquite trees appears to be contracting as mature and old individuals dominate the community. Although anecdotal evidence suggests that the fall in the local groundwater table is responsible …

Toric Ideals, Polytopes, And Convex Neural Codes, Caitlin Lienkaemper

HMC Senior Theses

How does the brain encode the spatial structure of the external world?

A partial answer comes through place cells, hippocampal neurons which

become associated to approximately convex regions of the world known

as their place fields. When an organism is in the place field of some place

cell, that cell will fire at an increased rate. A neural code describes the set

of firing patterns observed in a set of neurons in terms of which subsets

fire together and which do not. If the neurons the code describes are place

cells, then the neural code gives some information about the …

Quantifying Fish Habitat Associated With Stream Simulation Design Culverts In Northern Wisconsin, A. Timm, D. Higgins, J. Stanovick, R. Kolka, S. Eggert

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This study investigated the effects of culvert replacement design on fish habitat and fish weight by comparing substrate diversity and weight at three stream simulation (SS)-design and three bankfull and backwater (BB)-design sites on the Chequamegon-Nicolet National Forest, Wisconsin. Stream channel cross-sections, Wolman substrate particle counts, and single-pass backpack electro-fishing survey data were used to quantify fish habitat and fish weight in 50-m upstream and downstream sample reaches at each site. We applied generalized linear mixed models to test the hypothesis that substrate size and fish weight did not differ according to stream-crossing design type (SS or BB) and location …

Resting State Functional Network Disruptions In A Kainic Acid Model Of Temporal Lobe Epilepsy., Ravnoor Singh Gill, Seyed M Mirsattari, L Stan Leung

Physiology and Pharmacology Publications

We studied the graph topological properties of brain networks derived from resting-state functional magnetic resonance imaging in a kainic acid induced model of temporal lobe epilepsy (TLE) in rats. Functional connectivity was determined by temporal correlation of the resting-state Blood Oxygen Level Dependent (BOLD) signals between two brain regions during 1.5% and 2% isoflurane, and analyzed as networks in epileptic and control rats. Graph theoretical analysis revealed a significant increase in functional connectivity between brain areas in epileptic than control rats, and the connected brain areas could be categorized as a limbic network and a default mode network (DMN). The …