Life Sciences Commons^™

Serum Comp And The Inflammatory Environment Of The Knee Before And After Exercise-Induced Load, Alyssa Evans, Robert D. Hyldahl, Sarah T. Ridge, Sunku Kwon, Ty J. Hopkins, Eric R. Robinson, Matthew K. Seeley

Biomedical Engineering Western Regional Conference

The purpose of this study was to determine how accurately serum COMP represents inflammatory cytokine levels, within the knee, before and after exercise.

Cytokines included: GM-CSF, IFNa2, IL-10, IL-12p40, IL-13, IL-15, IL-1ra, IL1b, IL1a, IL-4, IL-6, IL-8, IP-10, MCP-1, MIP-1a, MIP-1b and IL-17.

Differentiation And Containment Of Derived Pancreatic Beta Cells, Caden Duffy, Alonzo Cook Ph.D.

Biomedical Engineering Western Regional Conference

Currently, the only permanent cure for Type 1 Diabetes is a pancreatic or islet transplant. With the shortage of donors, we are progressing research towards alternative therapies by differentiating induced pluripotent stem cells into derived pancreatic β-cells that can be transplanted and used as treatment for Type 1 Diabetes. We are investigating methods to increase the yield of fully derived, insulin producing pancreatic β-cells and are additionally researching the use of hydrophilized expanded polytetrafluoroethylene for use in cell containment devices. These devices could offer a future alternative for islet transplantation in human patients.

Nerve Growth Factor And Lysophosphatidylcholine In Peripheral Nerve Repair, Keaton Karlinsey 8741888

Biomedical Engineering Western Regional Conference

NGF, Nerve Growth Factor, Lysophosphatidylcholine, Peripheral nerve regeneration, Sciatic nerve, Sciatic crush injury

Utilizing Microfluidics Devices To Monitor Endothelial Cell Migration., Tsz Ming Jeremy Tsang, Jacob Lefler, Charles Voyton, Kenneth Christensen

Biomedical Engineering Western Regional Conference

Utilizing microfluidics devices to monitor endothelial cell migration.

Engineering Fret Biosensors For Microrna Presence/Absence Analysis, Nicholas E. Larkey, Sean M. Burrows

Biomedical Engineering Western Regional Conference

No abstract provided.

Portable, Powerless Automation Of Valve Actuation For Microfluidic Large-Scale Integration Technology, Andrew Schmidt Mr., Matt Fitzgerald Mr., Emre Araci Mr., Connor Mcloughlin Mr.

Biomedical Engineering Western Regional Conference

Portable, powerless automation of valve actuation for microfluidic large-scale integration technology

Unusual Hprt Expression In Prostate Cancer Cells And Its Impact On Potential Treatment, Michelle H. Townsend, Abi M. Felsted, Michael D. Anderson, Richard A. Robison, Kim L. O'Neill

Biomedical Engineering Western Regional Conference

Unusual HPRT Expression in Prostate Cancer Cells and its Impact on Potential Treatment

Repeated Hapten Exposure Induces Persistent Tactile Sensitivity In Mice Modeling Localized Provoked Vulvodynia, Tijana Martinov, Jasmine Landry, Hanna Mengistu, Jyothi Dhanwada, Charles J. Benck, Jacyln Kline, Beebie Boo, Linnea Swanson, Elena Tonc, Randy Daughters, Brian T. Fife, Devavani Chatterjea

Faculty Publications

BACKGROUND:
Vulvodynia is a remarkably prevalent chronic pain condition of unknown etiology. Epidemiologic studies associate the risk of vulvodynia with a history of atopic disease. We used an established model of hapten-driven contact hypersensitivity to investigate the underlying mechanisms of allergy-provoked prolonged sensitivity to pressure.

METHODS:
We sensitized female ND4 Swiss mice to the hapten oxazolone on their flanks, and subsequently challenged them four days later with oxazolone or vehicle for ten consecutive days on the labia. We evaluated labiar sensitivity to touch, local mast cell accumulation, and hyperinnervation after ten challenges.

RESULTS:
Oxazolone-challenged mice developed significant tactile sensitivity that …

Understanding Contributing Factors To Child Drownings In Public Pools In Australia: A Review Of National Coronial Records, Lauren A. Petrass Dr, Jennifer Blitvich

International Journal of Aquatic Research and Education

This study examined the incidence and circumstances associated with child drowning in public pools in Australia; and identified the frequency and nature of coroners’ recommendations. Retrospective case-series analysis of child (aged 0-10 years) unintentional drowning deaths in public pools were conducted based on Coronial data. A total of 12 child drownings were identified. A lack of supervision was recognized as the key contributing factor in 92% of cases, with the caregiver responsible for multiple children (83%); older children supervising younger children (17%); and a busy pool environment (25%) consistently linked with in-adequate supervision. To address drownings in public pools it …

Will Seasonally Dry Tropical Forests Be Sensitive Or Resistant To Future Changes In Rainfall Regimes?, Kara Allen, Juan Manuel Dupuy, Maria G. Gei, Catherine Hulshof, David Medvigy, Camila Pizano, Christina M. Smith, Annette Trierweiler, Skip J. Van Bloem, Bonnie G. Waring, Xiangtao Xu, Jennifer S. Powers

Publications

Seasonally dry tropical forests (SDTF) are located in regions with alternating wet and dry seasons, with dry seasons that last several months or more. By the end of the 21st century, climate models predict substantial changes in rainfall regimes across these regions, but little is known about how individuals, species, and communities in SDTF will cope with the hotter, drier conditions predicted by climate models. In this review, we explore different rainfall scenarios that may result in ecological drought in SDTF through the lens of two alternative hypotheses: 1) these forests will be sensitive to drought because they are already …

Dataset For: Sun Glint Requirement For The Remote Detection Of Surface Oil Films, Mengqiu Wang

C-IMAGE data

This dataset includes selected points and their sun glint strength values of image pairs which were used in determining the sun glint threshold required for remotely sensing oil films in the northern Gulf of Mexico. The satellite imagery used in the analyses were collected by Moderate Resolution Imaging Spectroradiometer (MODIS) Terra (MODIST), MODIS Aqua (MODISA), and Visible Infrared Imaging Radiometer Suite (VIIRS) instruments. The dataset includes original raw file lists of the imagery used and information about how they can accessed can be found in the Supplemental Information section of the metadata. Post processing MODIS Rayleigh corrected reflectance (Rrc) data, …

Effect Of In-Water Scuba Diving Activities On Response Time In Recreational Divers, Christopher R. Kovacs Ph.D., Trevor D. Paulsen M.S.

International Journal of Aquatic Research and Education

The purpose of this study was to examine the relationship between the performance of in-water scuba diving training activities and simple motor response time. Twenty-four students enrolled in a scuba course had their motor response times measured before and after a one hour training session. Pre- and post-dive response times were measured using an iPad application. Additionally, students were asked to complete a dive history questionnaire to determine their diving experience and health history. Statistical analysis indicated a significant training effect on response time in the recreational scuba divers F (1.00, 23.00) p =.033. The results of this study suggest …

Pit Latrine Fecal Sludge Resistance Using A Dynamic Cone Penetrometer In Low Income Areas In Mzuzu City, Malawi., Charles F.C. Chirwa, Ralph P. Hall, Leigh Anne H. Krometis, Eric A. Vance, Adam Edwards, Ting Guan, Rochelle H. Holm

Faculty and Staff Scholarship

Pit latrines can provide improved household sanitation, but without effective and inexpensive emptying options, they are often abandoned once full and may pose a public health threat. Emptying techniques can be difficult, as the sludge contents of each pit latrine are different. The design of effective emptying techniques (e.g., pumps) is limited by a lack of data characterizing typical in situ latrine sludge resistance. This investigation aimed to better understand the community education and technical engineering needs necessary to improve pit latrine management. In low income areas within Mzuzu city, Malawi, 300 pit latrines from three distinct areas were assessed …

The Molecular Basis Of Talin2'S High Affinity Toward Β1-Integrin, Yaxia Yuan, Liqing Li, Yanyan Zhu, Lei Qi, Latifeh Azizi, Vesa P. Hytönen, Chang-Guo Zhan, Cai Huang

Molecular Modeling and Biopharmaceutical Center Faculty Publications

Talin interacts with β-integrin tails and actin to control integrin activation, thus regulating focal adhesion dynamics and cell migration. There are two talin genes, Tln1 and Tln2, which encode talin1 and talin2, and it is generally believed that talin2 functions redundantly with talin1. However, we show here that talin2 has a higher affinity to β1-integrin tails than talin1. Mutation of talin2 S339 to leucine, which can cause Fifth Finger Camptodactyly, a human genetic disease, completely disrupted its binding to β–integrin tails. Also, substitution of talin1 C336 with Ser enhanced the affinity of talin1, whereas substitution of talin2 S339 with …

Group B Streptococcus Induces Neutrophil Recruitment To Gestational Tissues And Elaboration Of Extracellular Traps And Nutritional Immunity, Visheh Kothary, Ryan S. Doster, Lisa M. Rogers, Leslie A. Kirk, Kelli L. Boyd, Joann Romano-Keeler, Kathryn Haley, Shannon D. Manning, David M. Aronoff, Jennifer A. Gaddy

Peer Reviewed Articles

Streptococcus agalactiae, or Group B Streptococcus (GBS), is a gram-positive bacterial pathogen associated with infection during pregnancy and is a major cause of morbidity and mortality in neonates. Infection of the extraplacental membranes surrounding the developing fetus, a condition known as chorioamnionitis, is characterized histopathologically by profound infiltration of polymorphonuclear cells (PMNs, neutrophils) and greatly increases the risk for preterm labor, stillbirth, or neonatal GBS infection. The advent of animal models of chorioamnionitis provides a powerful tool to study host-pathogen relationships in vivo and ex vivo. The purpose of this study was to evaluate the innate immune response …

Fibronectin And Androgen Receptor Expression Data In Prostate Cancer Obtained From A Rna-Sequencing Bioinformatics Analysis, Dibash K. Das, Thahmina Ali, Konstantinos Krampis, Olorunseun O. Ogunwobi

Publications and Research

Prostate cancer is the second most commonly diagnosed male cancer in the world. The molecular mechanisms underlying its development and progression are still unclear. Here we show analysis of a prostate cancer RNA-sequencing dataset that was originally generated by Ren et al. [3] from the prostate tumor and adjacent normal tissues of 14 patients. The data presented here was analyzed using our RNA-sequencing bioinformatics analysis pipeline implemented on the bioinformatics web platform, Galaxy. The relative expression of fibronectin (FN1) and the androgen receptor (AR) were calculated in fragments per kilobase of transcript per million mapped reads, and represented in FPKM …

Genomic Characterization Of Dairy Associated Leuconostoc Species And Diversity Of Leuconostocs In Undefined Mixed Mesophilic Starter Cultures, Cyril A. Frantzen, Witold Kot, Thomas B. Pederson, Ylva M. Ardo, Jeff Broadbent, Horst Neve, Lars H. Hansen, Fabio Dal Bello, Hilde M. Østlie, Hans P. Kleppen, Finn K. Vogensen, Helge Holo

Nutrition, Dietetics, and Food Sciences Faculty Publications

Undefined mesophilic mixed (DL-type) starter cultures are composed of predominantly Lactococcus lactis subspecies and 1–10% Leuconostoc spp. The composition of the Leuconostoc population in the starter culture ultimately affects the characteristics and the quality of the final product. The scientific basis for the taxonomy of dairy relevant leuconostocs can be traced back 50 years, and no documentation on the genomic diversity of leuconostocs in starter cultures exists. We present data on the Leuconostoc population in five DL-type starter cultures commonly used by the dairy industry. The analyses were performed using traditional cultivation methods, and further augmented by next-generation DNA sequencing …

Phylogenetic Analysis And Systematics Of The Acrapex Unicolora Hampson Species Complex (Lepidoptera, Noctuidae, Noctuinae, Apameini), With The Description Of Five New Species From The Afrotropics, Bruno Le Ru, Claire Capdevielle-Dulac, Boaz K. Musyoka, Beatrice Pallangyo, Mohamedi Njaku, Onésime Mubenga, Gilson Chipabika, Rose Ndemah, Grégoire Bani, Richard Molo, George Ong’Amo, Gael J. Kergoat

All Peer-Reviewed Publications

Ten morphologically similar species of Acrapex Hampson, 1891 (Lepidoptera, Noctuidae, Noctuinae, Apameini) from Central and Eastern Africa are reviewed, including five new species: Acrapex kafula le Ru sp. nov., A. kavumba le Ru sp. nov., A. kiakouama le Ru sp. nov., A. miscantha le Ru sp. nov. and A. simillima le Ru sp. nov. Evidence is provided to transfer the monotypic genus Poecopa Bowden, 1956 to the genus Acrapex. Host plants of five species are recorded, some of them for the first time. Acrapex kavumba sp. nov., A. miscantha sp. nov. and A. simillima sp. nov. were found on one …

Climate Warming Can Accelerate Carbon Fluxes Without Changing Soil Carbon Stocks, Susan E. Ziegler, Ronald Benner, Sharon A. Billings, Kate A. Edwards, Michael Philben, Xinbiao Zhu, Jerome Laganière

Faculty Publications

Climate warming enhances multiple ecosystem C fluxes, but the net impact of changing C fluxes on soil organic carbon (SOC) stocks over decadal to centennial time scales remains unclear. We investigated the effects of climate on C fluxes and soil C stocks using space-for-time substitution along a boreal forest climate gradient encompassing spatially replicated sites at each of three latitudes. All regions had similar SOC concentrations and stocks (5.6 to 6.7 kg C m−2). The three lowest latitude forests exhibited the highest productivity across the transect, with tree biomass:age ratios and litterfall rates 300 and 125% higher than those in …

Genome-Wide Dna Methylation Reprogramming In Response To Inorganic Arsenic Links Inhibition Of Ctcf Binding, Dnmt Expression And Cellular Transformation, Matthew Rea, Meredith Eckstein, Rebekah Eleazer, Caroline Smith, Yvonne N. Fondufe-Mittendorf

Molecular and Cellular Biochemistry Faculty Publications

Chronic low dose inorganic arsenic (iAs) exposure leads to changes in gene expression and epithelial-to-mesenchymal transformation. During this transformation, cells adopt a fibroblast-like phenotype accompanied by profound gene expression changes. While many mechanisms have been implicated in this transformation, studies that focus on the role of epigenetic alterations in this process are just emerging. DNA methylation controls gene expression in physiologic and pathologic states. Several studies show alterations in DNA methylation patterns in iAs-mediated pathogenesis, but these studies focused on single genes. We present a comprehensive genome-wide DNA methylation analysis using methyl-sequencing to measure changes between normal and iAs-transformed cells. …

Adipocytes Activate Mitochondrial Fatty Acid Oxidation And Autophagy To Promote Tumor Growth In Colon Cancer, Yang-An Wen, Xiaopeng Xing, Jennifer W. Harris, Yekaterina Y. Zaytseva, Mihail I. Mitov, Dana L. Napier, Heidi L. Weiss, B. Mark Evers, Tianyan Gao

Markey Cancer Center Faculty Publications

Obesity has been associated with increased incidence and mortality of a wide variety of human cancers including colorectal cancer. However, the molecular mechanism by which adipocytes regulate the metabolism of colon cancer cells remains elusive. In this study, we showed that adipocytes isolated from adipose tissues of colon cancer patients have an important role in modulating cellular metabolism to support tumor growth and survival. Abundant adipocytes were found in close association with invasive tumor cells in colon cancer patients. Co-culture of adipocytes with colon cancer cells led to a transfer of free fatty acids that released from the adipocytes to …

Career: Robust Aquatic Habitat Representation For Water Resources Decision-Making, Sarah Null

Funded Research Records

No abstract provided.

Sediment Burial Stress Response, Bio-Indicators And Thresholds For A Tropical Multi-Species Seagrass Assemblage: Report Of Theme 5 - Project 5.5.2 Prepared For The Dredging Science Node, John Statton, Kathryn Mcmahon, Roisin Mccallum, Gary Kendrick, Paul Lavery

Research outputs 2014 to 2021

Deterioration in water clarity by resuspension of dredged sediments is presumed to be a major mechanism by which dredging can impact seagrasses. This report presents findings from a controlled light experiment that aimed to determine the effects of low light stress on the growth of three seagrass species found in the northwest of Western Australia.

Aims

• To determine the effects of sediment burial stress under dredge-simulated conditions on the growth and health of three seagrass species found in the northwest of Western Australia.
• Provide guidance and protocols for the application of the research outputs (e.g. seagrass burial stress:response relationships, sub-lethal …

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part X. Pandiborellius Stat. N. And Pandinurus (Scorpionidae) With Description Of Four New Species From Eritrea And Ethiopia, And Review Of Pandinus Sensu Lato Taxonomy, František Kovařík, Graeme Lowe, Michael E. Soleglad, Jana Plíškova

Euscorpius

We introduce a new system of classification for the subfamily Scorpioninae Latreille, 1802 which includes genera Heterometrus Ehrenberg, 1828, Opistophthalmus C. L. Koch, 1837, Pandiborellius Rossi, 2015 stat. n., Pandinoides Fet, 1997, Pandinops Birula, 1913, Pandinurus Fet, 1997, Pandinus (Pandinus) Thorell, 1876, Pandinus (Pandinopsis) Vachon, 1974 stat. n., Pandinus (Pandipalpus) Rossi, 2015 stat. n., and Scorpio Linné, 1758. We provide a checklist of 41 valid species and their synonyms of Pandinus sensu lato. We revise Horn of Africa genera Pandiborellius stat. n. and Pandinurus; all …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Estimating The Probability Of Clonal Relatedness Of Pairs Of Tumors In Cancer Patients, Audrey Mauguen, Venkatraman E. Seshan, Irina Ostrovnaya, Colin B. Begg

Memorial Sloan-Kettering Cancer Center, Dept. of Epidemiology & Biostatistics Working Paper Series

Next generation sequencing panels are being used increasingly in cancer research to study tumor evolution. A specific statistical challenge is to compare the mutational profiles in different tumors from a patient to determine the strength of evidence that the tumors are clonally related, i.e. derived from a single, founder clonal cell. The presence of identical mutations in each tumor provides evidence of clonal relatedness, although the strength of evidence from a match is related to how commonly the mutation is seen in the tumor type under investigation. This evidence must be weighed against the evidence in favor of independent tumors …

Genetic Targeting In Cerebellar Purkinje Cells: An Update., Anna Sługocka, Jan Wiaderkiewicz, Jaroslaw J Barski

Pharmacology and Physiology Faculty Publications

Since the last review paper published in Cerebellum in 2002 [1], there has been a substantial increase in the number of experiments utilizing transgenic manipulations in murine cerebellar Purkinje cells. Most of these approaches were made possible with the use of the Cre/loxP methodology and pcp2/L7 based Cre recombinase expressing transgenic mouse strains. This review aims to summarize all studies which used Purkinje cell specific transgenesis since the first use of mouse strain with Purkinje cell specific Cre expression in 2002.

Parasite Infection, Carcinogenesis And Human Malignancy., Hoang Van Tong, Paul J. Brindley, Christian G Meyer, Thirumalaisamy P Velavan

Microbiology, Immunology, and Tropical Medicine Faculty Publications

Cancer may be induced by many environmental and physiological conditions. Infections with viruses, bacteria and parasites have been recognized for years to be associated with human carcinogenicity. Here we review current concepts of carcinogenicity and its associations with parasitic infections. The helminth diseases schistosomiasis, opisthorchiasis, and clonorchiasis are highly carcinogenic while the protozoan Trypanosoma cruzi, the causing agent of Chagas disease, has a dual role in the development of cancer, including both carcinogenic and anticancer properties. Although malaria per se does not appear to be causative in carcinogenesis, it is strongly associated with the occurrence of endemic Burkitt lymphoma in …

Yeast Help Identify Cytopathic Factors Of Zika Virus, Michael I. Bukrinsky

Microbiology, Immunology, and Tropical Medicine Faculty Publications

Accumulating evidence implicates Zika virus (ZIKV) in pathogenesis of microcephaly in newborns and Guillain-Barré syndrome in adults. However, it remains unclear which viral proteins are responsible for these effects and what are the underlying mechanisms of their pathogenic activity. A recent paper by Drs. Zhao and Gallo, and their colleagues at University of Maryland in Baltimore used fission yeast for genome-wide analysis of ZIKV proteins. They demonstrated cytopathogenic activity for seven ZIKV proteins, anaC, C, prM, M, E, NS2B and NS4A. This activity was shown to be dependent on oxidative stress, and for NS4A they demonstrated involvement of the TOR …

Novel Gene-Sequence Markers For Isolate Tracking Within Monilinia Fructicola Lesions, Madeline E. Dowling, Guido Schnabel, Harriet G. Boatwright, Sydney E. Everhart

Department of Plant Pathology: Faculty Publications

Background: Monilinia fructicola is a diverse pathogen of pome and stone fruits that causes severe economic losses each year. However, little is known about inoculum flow within or between orchards and pathogen establishment in an orchard, because few methods exist for detecting diversity or tracking isolates over time. SSR loci are an effective option, but may be confounded by a high degree of mutability and potential sensitivity to abiotic stress.

Results: Through transcriptome analysis, we identified novel markers mrr1, DHFR and MfCYP01 and validated stability of these markers under fungicide stress in natural infection sites. Nucleotide variation …