Biochemical and Biomolecular Engineering Commons^™

Comparison Of Antibacterial Properties Of Commercial Bone Cements And Fillers With A Zinc-Based Glass Polyalkenoate Cement, A. W. Wren, N. M. Cummins, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Postoperative infection following invasive surgical procedures is a significant cause for concern, particularly in spinal reconstructive surgery. The objective of this study is to compare the antibacterial efficacy of a novel zinc-based glass polyalkenoate cement (Zn-GPC) based on 0.04SrO-0.12CaO-0.36ZnO- 0.48SiO₂ glass, to a number of commercially available bone cements and fillers including Simplex P + Tobramycin (S_Tob), Spineplex (S_pine) and Novabone Putty (N_Put). The agar diffusion test was performed on each material against Escherichia coli, Staphlococcus epidermidis, Pseudomonas aeruginosa and Staphlococcus Aureus. S_Tob was found to produce large inhibition zones in each …

Surface Hydration: Principles And Applications Toward Low-Fouling/Nonfouling Biomaterials, Lingyan Liu, Jie Zheng

Chemical, Biomolecular, and Corrosion Engineering Faculty Research

Surface resistance to nonspecific protein adsorption, cell/bacterial adhesion, and biofilm formation is critical for the development and performance of biomedical and analytical devices. Significant needs and efforts have been made in the development of biocompatible and bioactive materials for antifouling surfaces, but much of the work retains an empirical flavor due to the complexity of experiments and the lack of robust theoretical models. In this review, two major classes of nonfouling materials (i.e. hydrophilic and zwitterionic materials) and associated basic nonfouling mechanisms and practical examples are discussed. Highly hydrated chemical groups with optimized physical properties of the surface, along with …

The Effect Of Ionic Dissolution Products Of Ca-Sr-Na-Zn-Si Bioactive Glass On In Vitro Cytocompatibility, S. Murphy, A. W. Wren, Mark R. Towler, D. Boyd

Chemical and Biochemical Engineering Faculty Research & Creative Works

Many commercial bone grafts cannot regenerate healthy bone in place of diseased bone. Bioactive glasses have received much attention in this regard due to the ability of their ionic dissolution products to promote cell proliferation, cell differentiation and activate gene expression. Through the incorporation of certain ions, bioactive glasses can become therapeutic for specific pathological situations. Calcium-strontium-sodium-zinc-silicate glass bone grafts have been shown to release therapeutic levels of zinc and strontium, however the in vitro compatibility of these materials is yet to be reported. In this study, the in vitro cytocompatibility of three different calcium-strontium-sodium-zinc-silicate glasses was examined as a …

Identification Of An Archaeal Presenilin-Like Intramembrane Protease, Celia Torres-Arancivia, Carolyn M. Ross, Jose Chavez, Zahra Assur, Georgia Dolios, Filippo Mancia, Iban Ubarretxena-Belandia

Publications and Research

Background: The GXGD-type diaspartyl intramembrane protease, presenilin, constitutes the catalytic core of the c-secretase multi-protein complex responsible for activating critical signaling cascades during development and for the production of b-amyloid peptides (Ab) implicated in Alzheimer’s disease. The only other known GXGD-type diaspartyl intramembrane proteases are the eukaryotic signal peptide peptidases (SPPs). The presence of presenilin-like enzymes outside eukaryots has not been demonstrated. Here we report the existence of presenilin-like GXGD-type diaspartyl intramembrane proteases in archaea.

Methodology and Principal Findings: We have employed in vitro activity assays to show that MCMJR1, a polytopic membrane protein from the archaeon Methanoculleus marisnigri JR1, …

A Spectroscopic Investigation Into The Setting And Mechanical Properties Of Titanium Containing Glass Polyalkenoate Cements, A. W. Wren, A. Kidari, N. M. Cummins, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Titanium (Ti) implants are extensively used in a number of biomedical and dental applications. This work introduces Ti into the glass phase of a zinc-based glass polyalkenoate cement (GPC) and investigates changes in handling and mechanical properties considering two molecular weight polyacrylic acids (PAA), E9 and E11. Considering the handling properties, the working time (T_w) increased from 50 s_E9, 32 s_E11 (BT 101, Ti-free) to 169 s_E9, 74 s_E11 with TW-Z (highest Ti content), respectively. The setting time (T_s) increased from 76 s_E9, 47 s_E11 (BT 101) …

A New Methodology For Hydrodynamic Similarity In Bubble Columns, Ashfaq Shaikh, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

Bubble Columns Are Widely Used in Chemical, Petrochemical, and Biochemical Industries for Various Processes Such as Alkylation, Oxidation, Chlorination, Wet Oxidation of Effluents, Etc. a New Hypothesis for Hydrodynamic Similarity that Can Be Subsequently Used for Scale-Up of Bubble Column Reactors Was Proposed. This Hypothesis Was Evaluated using Advanced Diagnostic Techniques. the Conditions of Similarity Where overall Gas Holdup and Radial Gas Holdup Profiles Were the Same, and Mismatch Where overall Gas Holdup Was the Same But Gas Holdup Radial Profiles Were Different, Were Identified. the Condition that Two Systems Must Operate in the Same Flow Regime to Be Hydrodynamically …

Local Gas Holdup In A Draft Tube Airlift Bioreactor, Hu Ping Luo, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

Airlift Column Bioreactors Are Gas-Liquid Contact Devices Characterized by a Rising Channel and a Down Flow Channel Due to Gas Holdup Differences in These Two Channels. Local Gas Holdup Distribution Strongly Affects the overall Gas-Liquid Flow Dynamics in Airlift Columns. in This Work, Local Gas Holdup Distributions in a Draft Tube Airlift Column Covering Both Bubbly Flow and Churn-Turbulent Flow Regimes Have Been Studied using Computed Tomography (CT) Technique as Well as Conventional Techniques. the Radial and Axial Evolutions of the Gas Holdup Distribution Will Be Discussed, Together with the Effects of Superficial Gas Velocity and Geometry Parameters. the Obtained …

Crystallization Method For Benzphetamine, Dennis J. Kalota, Keith Tomazi

Chemical and Biochemical Engineering Faculty Research & Creative Works

There is disclosed a method for the crystallization of benzphetamine hydrochloride from an organic medium by the steps of removing water from the system to a very low level and then reducing the temperature of the organic medium to provide crystallization of the acid salt. In the event that crystallization does not occur upon lowering the temperature of the medium, it has been discovered that gentle heating of the organic medium results in crystallization of the acid salt. It has also been discovered that higher temperature crystallization has been provided by removal of methamphetamine from the composition. The crystalline benzphetamine …

Recombinant Factors For Hemostasis, Jennifer Calcaterra

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Trauma deaths are a result of hemorrhage in 37% of civilians and 47% military personnel and are the primary cause of death for individuals under 44 years of age. Current techniques used to treat hemorrhage are inadequate for severe bleeding. Preliminary research indicates that fibrin sealants (FS) alone or in combination with a dressing may be more effective; however, it has not been economically feasible for widespread use because of prohibitive costs related to procuring the proteins. To meet future demands for hemostatic therapies, FS will likely include recombinant human fibrinogen (rFI) and recombinant human Factor XIII (rFXIII). The underlying …

The Effect Of Adding Organic Polymers On The Handling Properties, Strengths And Bioactivity Of A Ca-Sr-Zn-Si Glass Polyalkenoate Cement, A. W. Wren, N. M. Cummins, A. Coughlan, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

This work demonstrates the addition of a number of naturally occurring proteins/polymers to a zinc-based glass polyalkenoate cements (GPCs). Chitin (Chi.), collagen (Col.), cysteine (Cys.) and keratin (Ker.) were added with the intention of improving the bioactivity of this cement. Initial testing involved characterization of the glass with X-ray diffraction (XRD) and differential thermal analysis (DTA) before and after sterilization with γ-irradiation. No significant changes occurred as a result of sterilization. Handling properties of the modified cements were not significantly different from those of the control, BT 101 (Working T_w-36_s, and setting time T_s-70 …

Development Of Pilot Plant For Bio-Ethanol Processing, Emrod Elisante

Tanzania Journal of Engineering and Technology (TJET)

The paper outlines achievements obtained in developing a pilot bio-ethanol plant at the Department of Chemical and Mining Engineering (CME), University of Dar es Salaam. The pilot plant consists of: 30 L inoculums tank; 1,700 L fermenter; 1,500 L/day distillation column; and ancillary equipment. The prototype is a platform intended to be used for technology demonstration and research by graduate and undergraduate students studying the production of bio-ethanol using traditional and non-traditional raw materials like coffee mash, cashew fruit, and sisal inulin. The equipment has been developed using locally available engineering resources and the distillation column with 18 sieve tray …

Influence Of Morphology And Processing On Xps Characterisation Of Sro-Ca-Zno-Sio2 Glass, F. R. Laffir, A. W. Wren, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

A study was conducted to demonstrate the influence of morphology and processing on X-ray photoelectron spectroscopic (XPS) characterization SrO-Ca-ZnO-SiO₂ glass. The glass formulation being investigated was originally synthesized for developing a novel glass polyalkenoate cement (GPC). High resolution photoelectron spectra of Zn 2p, Ca 2p, Sr 3d, Si 2p, O 1s, and C 1s were recorded for the different forms of glass. It was observed that there was preferential enrichment of Zn²⁺ with an increase in the proportion of NBO for the investigated BT101 glass. The relative atomic concentration of Zn in BT101 glass was high and resulted …

Synthesis Of Pegylated Single Wall Carbon Nanotubes By A Photoinitiated Graft From Polymerization, Pu Zhang, David B. Henthorn

Chemical and Biochemical Engineering Faculty Research & Creative Works

A considerable amount of research has been devoted to carbon nanotubes because of their unique electrical, mechanical, optical, and chemical properties. Here, in this report, we introduce a novel, simple ultraviolet initiated "graft from" polymerization method to synthesize PEGylated carbon nanotubes. This grafting procedure significantly enhanced nanotube aqueous dispersibility and long-term stability in solution. Mass of grafted polymer chains was easily modulated by adjusting polymerization reaction time, and nanomaterials containing up to 80% polymer by weight were synthesized. Nanotube morphology was characterized by SEM, TEM before and after the functionalization. in addition, the covalent bonding of polymer chains to the …

Rapid Diagnosis Of Tuberculosis In A Peripheral Setting, Elsje Pienaar

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Tuberculosis is an ancient and worldwide epidemic affecting millions of people in mainly the developing world, killing almost 2 million people in 2008. Current diagnostic techniques are outdated and have proven insufficient to control the disease. Smear microscopy has poor sensitivity and culture is slow to yield results. Modern diagnostic techniques are making great strides in shortening time to result but are restricted by two qualities: 1) prohibitively high costs prevent implementation in resource poor areas, and 2) equipment and technician requirements limit application to centralized laboratories. There exists a divide between new technologies and the people that need them …

Hydrogen Fuel Cell Analysis: Lessons Learned From Stationary Power Generation Final Report, Scott E. Grasman, John W. Sheffield, Fatih Dogan, Sunggyu Lee, Umit O. Koylu, Angie Rolufs

Materials Science and Engineering Faculty Research & Creative Works

This study considered opportunities for hydrogen in stationary applications in order to make recommendations related to RD&D strategies that incorporate lessons learned and best practices from relevant national and international stationary power efforts, as well as cost and environmental modeling of pathways. The study analyzed the different strategies utilized in power generation systems and identified the different challenges and opportunities for producing and using hydrogen as an energy carrier. Specific objectives included both a synopsis/critical analysis of lessons learned from previous stationary power programs and recommendations for a strategy for hydrogen infrastructure deployment. This strategy incorporates all hydrogen pathways and …

Synthesis Of An Endothelial Cell Mimicking Surface Containing Thrombomodulin And Endothelial Protein C Receptor, Karl E. Kador

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Synthetic materials for use in blood contacting applications have been studied for many years with limited success. One of the main areas of need for these materials is the design of synthetic vascular grafts for use in the hundreds of thousands of patients who have coronary artery bypass grafting, many without suitable veins for autologous grafts. The design of these grafts is constrained by two common modes of failure, the formation of intimal hyperplasia (IH) and thrombosis. IH formation has been previously linked to a mismatching of the mechanical properties of the graft and has been overcome by creating grafts …

Mechanical Properties Of Hydroxyapatite-Zirconia Compacts Sintered By Two Different Sintering Methods, Declan J. Curran, Thomas J. Fleming, Mark R. Towler, Stuart Hampshire

Chemical and Biochemical Engineering Faculty Research & Creative Works

Microwave sintering is traditionally employed to reduce the sintering temperature required to densify powder compacts. The effect of microwave heating on hydroxyapatite (HA)-zirconia (ZrO₂) green bodies has been investigated in order to understand how microwave energy may affect the physical and mechanical properties of the resultant densified composites. Laboratory synthesised nano-sized HA and a commercial nano-sized ZrO₂ powder have been ball milled to create mixtures containing 0-5 wt% ZrO₂ loadings. Compacts were microwave sintered at either 700, 1000 or 1200°C with a 1 h hold time. Comparative firings were also performed in a resistive element furnace …

Optimization Of Environmental Conditions To Maximize Carbon Dioxide Sequestration Through Algal Growth, Kenneth M. Karcher

Theses and Dissertations

The micro-alga Chlorella vulgaris was cultivated under a variety of environmental conditions in various culture media solutions to assess and optimize growth rate and biomass productivity. Efforts during this work investigated growth parameters at the micro-scale in an air-lift bubble system with the goal of interpreting performance characteristics that can be applied to a larger serpentine tubular Photo-bioreactor. Maximum growth rates and biomass yields were 0.65 d^-1 and 2.003 g biomass/L and achieved in seven days using urea in de-ionized water under a 24:0 Photoperiod (Light:Dark). Additionally, growth rates and biomass yields of 0.65 d^-1 and 1.964 g …

Effects Of Preparative Parameters On The Structure And Performance Of Ca-La Metal Oxide Catalysts For Oil Transesterification, Shuli Yan, Manhoe Kim, Siddharth Mohan, Steven O. Salley, K.Y. Simon Ng

National Biofuels Energy Laboratory

The effects of preparative parameters on the surface basicity, composition, and transesterification activities of several Ca-La metal oxide catalysts were investigated. Four different preparation methods: ammonia-ethanol-carbon dioxide precipitation, physical mixing, impregnation, and co-precipitation, were studied. It was found that the ammonia-ethanol-carbon dioxide precipitation method resulted in the highest BET specific surface area, base strength and base site concentration. Moreover, catalyst surface composition and basicity are a function of calcination temperature, precipitants, pH, and molar ratio of Ca to La in precursor solution, and storage conditions. XRD, XPS, basicity and BET tests revealed that catalyst structure and dispersion of Ca species …

Evaluation Of Two Novel Aluminum-Free, Zinc-Based Glass Polyalkenoate Cements As Alternatives To Pmma Bone Cement For Use In Vertebroplasty And Balloon Kyphoplasty, Gladius Lewis, Mark R. Towler, Daniel Boyd, Matthew J. German, Anthony W. Wren, Owen M. Clarkin, Andrew Yates

Chemical and Biochemical Engineering Faculty Research & Creative Works

Vertebroplasty (VP) and balloon kyphoplasty (BKP) are now widely used for treating patients in whom the pain due to vertebral compression fractures is severe and has proved to be refractory to conservative treatment. These procedures involve percutaneous delivery of a bolus of an injectable bone cement either directly to the fractured vertebral body, VB (VP) or to a void created in it by an inflatable bone tamp (BKP). Thus, the cement is a vital component of both procedures. In the vast majority of VPs and BKPs, a poly(methyl methacrylate) (PMMA) bone cement is used. This material has many shortcomings, notably …

Response Surface Optimization Of Crystal Violet Decolorization By Pellets Of Pyncnoporus Sanguineus., Siti Suhana Sulaiman

Student Works (2010-2019)

Ligninolytic enzymes of white-rot fungi have broad specificities and have been implicated in transformation and mineralization of organo-pollutant with chemical structure similar to lignin e.g. synthetic dyes. This study was carried out to optimize selected parameters for decolorization of Crystal violet by Pycnoporus sanguineus in shake flasks. The parameters studied were initial dye concentration (ppm), agitation speed (rpm) and process time. They were optimized using response surface methodology (RSM). Subsequent to the optimization, the decolorization process was scaled up in stirred tank reactor (STR). Effect of different geometry of impellers on the decolorization process was studied. Curved blade and angled …

Effect Of Selected Physical And Chemical Parameters On Crystal Violet Decolorization By Immobilized Laccase., Nur Atiqah Ismail

Student Works (2010-2019)

Synthetic dyes are used for coloration of various materials like textiles, leather and food. Wastewater from dyeing industries constitutes a threat to the environment as many synthetic dyes are often toxic, mutagenic and carcinogenic. Besides, light absorption is hindered by the dyes run-off creating problems to photosynthetic aquatic plants and algae. Biodegradation of waste dyestuff with enzymes provides a viable alternative compared to the often expensive physical/chemical methods. Laccase from Trametes versicolor was chosen in this study as it exhibits low substrate specificity and high ability to oxidize many pollutants which suggested its potential in wastewater treatment and bioremediation. The …

Targeted Polymeric Biomaterials For The Prevention Of Post Surgical Adhesions, John M. Medley

University of Kentucky Doctoral Dissertations

Despite recent advances in surgical technique and the development of numerous therapeutic agents, the formation post surgical adhesions (PSA) continues to cause complications for many patients. In this research, we have employed a rational system to develop a novel treatment to address this clinical need. Based on an understanding of the biochemical events that lead to PSA formation, a series of targeted polymeric biomaterials was designed to interrupt the fibrin gel matrix propagation and suppress PSA formation.

Using group transfer polymerization, a series of well controlled block copolymers of polyacrylic acid and poly(ethylene glycol-methacrylate) based materials was synthesized. Subsequent functionalization …

Nonequilibrium Thermodynamics Modeling Of Coupled Biochemical Cycles In Living Cells, Yaşar Demirel

Yaşar Demirel Publications

Living cells represent open, nonequilibrium, self organizing, and dissipative systems maintained with the continuous supply of outside and inside material, energy, and information flows. The energy in the form of adenosine triphosphate is utilized in biochemical cycles, transport processes, protein synthesis, reproduction, and performing other biological work. The processes in molecular and cellular biological systems are stochastic in nature with varying spatial and time scales, and bounded with conservation laws, kinetic laws, and thermodynamic constraints, which should be taken into account by any approach for modeling biological systems. In component biology, this review focuses on the modeling of enzyme kinetics …

Using Artificial Neural Networks And Model Predictive Control To Optimize Acoustically Assisted Doxorubicin Release From Polymeric Micelles, Ghaleb A. Husseini, Farouq S. Mjalli, William G. Pitt, Nabil M. Abdel-Jabbar

Faculty Publications

We have been developing a drug delivery system that uses Pluronic P105 micelles to sequester a chemotherapeutic drug - namely, Doxorubicin (Dox) - until it reaches the cancer site. Ultrasound is then applied to release the drug directly to the tumor and in the process minimize the adverse side effects of chemotherapy on non-tumor tissues. Here, we present an artificial neural network (ANN) model that attempts to model the dynamic release of Dox from P105 micelles under different ultrasonic power intensities at two frequencies. The developed ANN model is then utilized to optimize the ultrasound application to achieve a target …

Quantifying And Resolving Multiple Vector Transformants In S. Cerevisiae Plasmid Libraries, Thomas C. Scanlon, Elizabeth C. Gray, Karl E. Griswold

Dartmouth Scholarship

In addition to providing the molecular machinery for transcription and translation, recombinant microbial expression hosts maintain the critical genotype-phenotype link that is essential for high throughput screening and recovery of proteins encoded by plasmid libraries. It is known that Escherichia coli cells can be simultaneously transformed with multiple unique plasmids and thusly complicate recombinant library screening experiments. As a result of their potential to yield misleading results, bacterial multiple vector transformants have been thoroughly characterized in previous model studies. In contrast to bacterial systems, there is little quantitative information available regarding multiple vector transformants in yeast. Saccharomyces cerevisiae is the …

Temperature-Induced Restructuring Of Self-Assembled Ptpd Nanoparticle Superlattices, Guoqiang Ren, Yangchuan Xing

Chemical and Biochemical Engineering Faculty Research & Creative Works

PtPd nanoparticle superlattices were prepared at room temperature and investigated for their restructuring at elevated temperatures. the PtPd nanoparticles were spherical with a diameter of 3.5±0.3nm and were capped with surfactants of oleic acids and oleylamine. Images of the nanoparticle superlattices were taken using a transmission electron microscope. Analysis of the images with fast Fourier transform (FFT) revealed whether the superlattices were crystalline or amorphous. It was found that the critical temperature that induced a phase transition of PtPd superlattices from a crystalline state to an amorphous state fall in the range of 100-110 °C. Meanwhile, heat-induced restructuring transformed less-ordered …

Fabrication Of Spherical Cao-Sro-Zno-Sio2 Particles By Sol-Gel Processing, Ill Yong Kim, Mark R. Towler, Anthony Wren, Chikara Ohtsuki

Chemical and Biochemical Engineering Faculty Research & Creative Works

This study was concerned with the fabrication of ceramic CaO-SrO-ZnO-SiO₂ spherical particles, which are novel candidates for the glass phase in glass polyalkenoate cements (GPCs). GPCs made from these glasses have potential as bone cements because, unlike conventional GPCs, they do not contain aluminum ions, which inhibit the calcification of hydroxyapatite in the body. The glass phase of GPCs require a controllable glass morphology and particle size distribution. Sol-gel processing can potentially be used to fabricate homogenous ceramic particles with controlled morphology. However, a thorough study on preparation conditions of spherical CaO-SrO-ZnO-SiO₂ particles by sol-gel processing has, to …

Characterisation And Mechanical Testing Of Hydrothermally Treated Ha/Zro2 Composites, D. J. Curran, T. J. Fleming, G. Kawachi, C. Ohtsuki, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

Hydrothermal treatment is traditionally employed to improve the sinterability of powder compacts by reducing porosity and increasing apparent density. The effect of hydrothermal treatment on green powder compacts has been assessed in order to better understand how treatment may affect the sinter ability of the bodies. Laboratory synthesized nano sized hydroxyapatite (HA) and a commercial zirconia (ZrO₂) powder have been ball milled together to create composite mixtures containing 0-5 wt% ZrO₂ loadings. Disc shaped bodies have been formed using uniaxial and subsequent isostatic pressure. The resultant coherent samples were subjected to hydrothermal treatment at either 120 or …

Analysis Of Γ-Irradiated Synthetic Bone Grafts By ²⁹Si Mas-Nmr Spectroscopy, Calorimetry And Xrd, D. Boyd, S. Murphy, Mark R. Towler, A. W. Wren, S. Hayakawa

Chemical and Biochemical Engineering Faculty Research & Creative Works

Ca-Sr-Zn-Si glasses have demonstrated excellent biocompatibility both in vitro using the MTT assay with L929 mouse fibroblast cells, and in vivo using healthy and ovariectomized female Wistar rats. However, the biological evaluation of the materials was performed on glass granules that were autoclaved, rather than γ-irradiated; the sterilisation procedure required prior to implantation of these materials in the human body. Given the fact that when a glass is exposed to ionizing radiation changes in its physical properties can take place, it is imperative to determine whether the structure of such glasses will be altered as a result of exposure to …