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Identification Of Novel Biosynthetic Gene Clusters Encoding For Polyketide/Nrps-Producing Chemotherapeutic Compounds From Marine-Derived Streptomyces Hygroscopicus From A Marine Sanctuary, Hannah Ruth Flaherty 2023 University of New Hampshire, Durham

Identification Of Novel Biosynthetic Gene Clusters Encoding For Polyketide/Nrps-Producing Chemotherapeutic Compounds From Marine-Derived Streptomyces Hygroscopicus From A Marine Sanctuary, Hannah Ruth Flaherty

Honors Theses and Capstones

Nearly one out of six deaths in 2020, around ten million people, were caused by cancer, making it a leading cause of death worldwide (WHO, 2022). This major public health issue, in addition to the rise of multidrug-resistant (MDR) pathogens, provides a high demand for the discovery of new pharmaceutical drugs to be used clinically to treat these conditions. The Streptomyces genus accounts to produce 39% of all microbial metabolites currently approved for human health, indicating its potential as an important species to study for antimicrobial and anticancer agents. The long linear genome of Streptomyces contains specialized sequences known as …


Closing Pit Lakes As Aquatic Ecosystems: Risk, Reality, And Future Uses, Mark A. Lund, Melanie L. Blanchette 2023 Edith Cowan University

Closing Pit Lakes As Aquatic Ecosystems: Risk, Reality, And Future Uses, Mark A. Lund, Melanie L. Blanchette

Research outputs 2022 to 2026

Mine pit lakes are formed when open-cut pits flood with water, and these lakes occur by the thousands on every inhabited continent. The remediation and closure of pit lakes is a pressing issue for sustainable development and provision of freshwater ecosystem services. While pit lakes can be spectacular examples of recreation and renewal, pit lakes may be better known for their poor water qualities and risks to communities and the environment. Often the public wants to simply “fill the pits in” to restore a terrestrial landscape, but this is not always possible. Therefore, planning for remediation and future uses is …


Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. McMahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards 2023 Edith Cowan University

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Research outputs 2022 to 2026

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40 – 75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ13C and δ15N) of host and symbiont tissues and protein concentration. Trophic strategies …


Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch 2023 Old Dominion University

Examining The Connectivity Of Antarctic Krill On The West Antarctic Peninsula: Implications For Pygoscelis Penguin Biogeography And Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of these populations may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis penguins that breed along the WAP during the austral summer. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across four austral summers. Specifically, we examined krill connectivity around the Adélie gap, a 400 km long region along …


Microdebris Abundance, Distribution, And Ingestion By Sargassum-Associated Juvenile Fishes In The Gulf Of Mexico, Olivia L. Lestrade, Frank Hernandez 2023 University of Southern Mississippi

Microdebris Abundance, Distribution, And Ingestion By Sargassum-Associated Juvenile Fishes In The Gulf Of Mexico, Olivia L. Lestrade, Frank Hernandez

Gulf and Caribbean Research

Holopelagic Sargassum is a critical nursery habitat for the early life stages of many marine fishes, including several federally managed species in the United States and Caribbean. Sargassum is often aggregated along surface convergence features where microdebris (synthetic, semi—synthetic, and naturally—derived particles size) have also been found in relatively high concentrations. In this study, we collected microdebris from Sargassum and adjacent open water habitats (in 2018), and juvenile fishes from Sargassum (in 2017 and 2018) in the northern Gulf of Mexico to quantify habitat—specific microdebris concentrations and the degree to which Sargassum—associated juvenile fishes ingest microdebris. Microdebris concentrations within …


ไมโครพลาสติกปนเปื้อนในสิ่งแวดล้อมชายฝั่งทะเล ตำบลแสมสาร อำเภอสัตหีบ จังหวัดชลบุรี, ศิวนาถ แพ่งพันธ์ 2023 คณะวิทยาศาสตร์

ไมโครพลาสติกปนเปื้อนในสิ่งแวดล้อมชายฝั่งทะเล ตำบลแสมสาร อำเภอสัตหีบ จังหวัดชลบุรี, ศิวนาถ แพ่งพันธ์

Chulalongkorn University Theses and Dissertations (Chula ETD)

ไมโครพลาสติกสะสมในสิ่งแวดล้อมทางทะเล เกิดจากการเสื่อมสภาพของขยะพลาสติกที่ถูกทิ้ง ซึ่งมีแนวโน้มเพิ่มขึ้นตามปริมาณการใช้งาน อีกทั้งยังกำจัดออกได้ยาก จึงเป็นปัญหาที่สำคัญที่ส่งผลกระทบต่อสิ่งแวดล้อมทางทะเล การศึกษานี้จึงศึกษาปริมาณ ขนาด รูปร่าง สี และชนิดพอลิเมอร์ของไมโครพลาสติกที่สะสมในพื้นที่ชายฝั่งทะเล ตำบลแสมสาร อำเภอสัตหีบ จังหวัดชลบุรี โดยเก็บตัวอย่าง ผิวดินในบริเวณสถานที่รองรับขยะ (DSS) ดินจากผิวถนน (RDS) และตะกอนพื้นทะเล (SED) เมื่อวันที่ 11 กุมภาพันธ์ และตัวอย่างตะกอนชายหาด (SAND) เมื่อวันที่ 25 มีนาคม 2566 นำมาสกัดหาปริมาณและระบุชนิดไมโครพลาสติกด้วยเครื่องฟูเรียร์ทรานฟอร์มอินฟราเรดสเปกโตรมิเตอร์ (FTIR) พบการสะสมในตัวอย่าง DSS > RDS > SAND > SED และมีปริมาณเฉลี่ยเท่ากับ 14,375 ± 49,245, 625 ± 593, 99.8 ± 75.3 และ 83.1 ± 50.4 ชิ้นต่อกิโลกรัมน้ำหนักแห้งตามลำดับ ส่วนใหญ่ (>70%) มีขนาดเล็กกว่า 1000 ไมโครเมตร และมีชนิดรูปร่างเป็นเส้นใย (63%) และชิ้นส่วนแตกหัก (26%) มีสีใส (30%) สีดำ (21%) และสีน้ำเงินเท่ากับสีเหลือง (16%) ส่วนพอลิเมอร์หลักที่พบได้แก่ PE PP และ PET ซึ่งเป็นพอลิเมอร์ที่พบได้ทั่วไปในผลิตภัณฑ์พลาสติกที่นิยมใช้ในชีวิตประจำวัน สอดคล้องกับลักษณะพื้นที่ที่เป็นชุมชนขนาดเล็กและมีกิจกรรมท่องเที่ยวเป็นสำคัญในพื้นที่ที่มีการทำประมงพบไมโครพลาสติกชนิดเส้นใย PA เป็นพอลิเมอร์ชนิดเด่น ซึ่งอาจเกิดจากการแตกหักจากตาข่ายดักปลาผลการศึกษาครั้งนี้บ่งชี้ได้ว่าไมโครพลาสติกที่สะสม ได้รับอิทธิพลมาจากกิจกรรมในพื้นที่ การเสื่อมสภาพของพลาสติกไม่เพียงแต่จะเพิ่มการแตกหักเป็นไมโครพลาสติกที่สามารถสะสมเข้าสู่ร่างกายและส่งผ่านในห่วงโซ่อาหารได้ แต่ยังสามารถปลดปล่อยสารเติมแต่งสู่สิ่งแวดล้อมได้ ดังนั้นตัวอย่างสิ่งแวดล้อมที่พบปริมาณไมโครพลาสติกมากที่สุด นำมาสกัดหาปริมาณสารเติมแต่ง ได้แก่ DMP, DEP, DAP, DiBP, DBP, BBP, DOA, DEHP, BHT, TPhP และ EPhP ด้วยเครื่องแก๊สโครมาโทกราฟฟีแมสสเปกโทรมิเตอร์ (GC-MS) พบสารกลุ่ม plasticizer ชนิด …


Porifera: Biology And Medicinal Properties, Emma L. Rayfield 2023 Gardner-Webb University

Porifera: Biology And Medicinal Properties, Emma L. Rayfield

Undergraduate Honors Theses

The focus of this thesis is the possibility of oceanic medicine through understanding the general biology of poriferans, their symbionts, medicinal properties, and how we could harvest sponges conservatively. It was necessary to understand the basic biology of poriferans regarding their structures, differences in their classes, and how they obtain nutrition, develop, and reproduce. The ecology of the poriferans was also researched including their larval and sessile stages and how their environment determines where they settle. Additionally, ecology was examined including how poriferans interact with symbionts and other organisms. This then was utilized to seek whether poriferans had useful medical …


Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey 2023 Florida Fish and Wildlife Conservation Commission

Biomass And Productivity Of Thalassia Testudinum In Estuaries Of The Florida Panhandle, Laura A. Yarbro, Paul R. Carlson, Ken L. Heck, Dorothy Byron, Sandra Brooke, Linda Fitzhugh, Sheila Scolaro, Barbara Albrecht, Rachel Presley, Jane M. Caffrey

Gulf and Caribbean Research

Thalassia testudinum often dominates seagrass meadows of the Florida panhandle but few measurements of productivity, biomass, density, turnover or leaf area index in this region have been made. We targeted 5 estuaries located at similar latitudes, 30⁰ ± 0.3⁰N: Big Lagoon, Santa Rosa Sound, St. Andrew Bay, St. Joseph Bay, and St. George Sound. This study was one component of a collaborative partnership of state and local researchers examining factors preventing recovery in panhandle estuarine areas that had historically contained seagrass in the 1940s and 1950s. Measurements were made twice in 2016, once in June and then again in summer …


Dynamics Of The Benthic Communities Of Pigeon Islets (Guadeloupe Island, Lesser Antilles) From 2012 To 2021 Monitored By A Photo-Quadrats Technique, Hanna-May Malahel, Camille Freschet, Simone Mège, Claude Bouchon 2023 Université des Antilles, Pointe-à-Pitre

Dynamics Of The Benthic Communities Of Pigeon Islets (Guadeloupe Island, Lesser Antilles) From 2012 To 2021 Monitored By A Photo-Quadrats Technique, Hanna-May Malahel, Camille Freschet, Simone Mège, Claude Bouchon

Gulf and Caribbean Research

Since 2012, the benthic communities of the Pigeon Islets (Guadeloupe Island, Lesser Antilles) have been monitored biannually by the National Park of Guadeloupe using photo—quadrats. This monitoring was carried out at 12 coral reef stations distributed around the islets. The data collected from 2012 to 2021 highlight the significant events that disrupted the coral communities of Guadeloupe. Among these remarkable phenomena, an episode of coral bleaching occurred in 2019, followed by the appearance of a new coral disease, Stony Coral Tissue Loss Disease (SCTLD), in 2020. As a result of these threats, a drop of 54% of coral cover was …


Co-Occurrence Of Marine And Freshwater Phycotoxins In Oysters, And Analysis Of Possible Predictors For Management, Sarah K. D. Pease, Todd A. Egerton, Kimberly S. Reece, Marta P. Sanderson, Michelle D. Onofrio, Evan Yeargan, Adam Wood, Amanda Roach, I-Shuo Wade Huang, Gail P. Scott, Allen R. Place, Amy M. Hayes, Juliette L. Smith 2023 Virginia Institute of Marine Science

Co-Occurrence Of Marine And Freshwater Phycotoxins In Oysters, And Analysis Of Possible Predictors For Management, Sarah K. D. Pease, Todd A. Egerton, Kimberly S. Reece, Marta P. Sanderson, Michelle D. Onofrio, Evan Yeargan, Adam Wood, Amanda Roach, I-Shuo Wade Huang, Gail P. Scott, Allen R. Place, Amy M. Hayes, Juliette L. Smith

Biological Sciences Faculty Publications

Oysters (Crassostrea virginica) were screened for 12 phycotoxins over two years in nearshore waters to collect baseline phycotoxin data and to determine prevalence of phycotoxin co-occurrence in the commercially and ecologically-relevant species. Trace to low concentrations of azaspiracid-1 and -2 (AZA1, AZA2), domoic acid (DA), okadaic acid (OA), and dinophysistoxin-1 (DTX1) were detected, orders of magnitude below seafood safety action levels. Microcystins (MCs), MC-RR and MC-YR, were also found in oysters (maximum: 7.12 μg MC-RR/kg shellfish meat wet weight), warranting consideration of developing action levels for freshwater phycotoxins in marine shellfish. Oysters contained phycotoxins that impair shellfish health: karlotoxin1-1 and …


Disparate Population And Holobiont Structure Of Pocilloporid Corals Across The Red Sea Gradient Demonstrate Species-Specific Evolutionary Trajectories, Carol Buitrago-López, Anny Cárdenas, Benjamin C.C. Hume, Thierry Gosselin, Fabian Staubach, Manuel Aranda, Daniel J. Barshis, Yvonne Sawall, Christian R. Voolstra 2023 Old Dominion University

Disparate Population And Holobiont Structure Of Pocilloporid Corals Across The Red Sea Gradient Demonstrate Species-Specific Evolutionary Trajectories, Carol Buitrago-López, Anny Cárdenas, Benjamin C.C. Hume, Thierry Gosselin, Fabian Staubach, Manuel Aranda, Daniel J. Barshis, Yvonne Sawall, Christian R. Voolstra

Biological Sciences Faculty Publications

Global habitat degradation heightens the need to better understand patterns of genetic connectivity and diversity of marine biota across geographical ranges to guide conservation efforts. Corals across the Red Sea are subject to pronounced environmental differences, but studies so far suggest that animal populations are largely connected, excepting evidence for a genetic break between the northern-central and southern regions. Here, we investigated population structure and holobiont assemblage of two common pocilloporid corals, Pocillopora verrucosa and Stylophora pistillata, across the Red Sea. We found little evidence for population differentiation in P. verrucosa, except for the southernmost site. Conversely, S. …


A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky 2023 Old Dominion University

A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris Van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky

Biological Sciences Faculty Publications

Biodiversity loss is a major global challenge and minimizing extinction rates is the goal of several multilateral environmental agreements. Policy decisions require comprehensive, spatially explicit information on species’ distributions and threats. We present an analysis of the conservation status of 14,669 European terrestrial, freshwater and marine species (ca. 10% of the continental fauna and flora), including all vertebrates and selected groups of invertebrates and plants. Our results reveal that 19% of European species are threatened with extinction, with higher extinction risks for plants (27%) and invertebrates (24%) compared to vertebrates (18%). These numbers exceed recent IPBES (Intergovernmental Platform on Biodiversity …


[Snakehead (Channa Marulius)]Neurocranium, Sam Gorman, Jessica Rutenis, David W. Kerstetter 2023 Nova Southeastern University

[Snakehead (Channa Marulius)]Neurocranium, Sam Gorman, Jessica Rutenis, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Snakehead Neurocranium


Novel Biorefinery Process For Extraction Of Laminarin, Alginate And Protein From Brown Seaweed Using Hydrodynamic Cavitation, Xianglu Zhu, Laura Healy, Rahel Suchintita Das, M.L. Bhavya, Shanmugapriya Karuppusamy, Da-Wen Sun, Colm O'Donnell, Brijesh K. Tiwari 2023 Teagasc Food Research Centre, Ireland

Novel Biorefinery Process For Extraction Of Laminarin, Alginate And Protein From Brown Seaweed Using Hydrodynamic Cavitation, Xianglu Zhu, Laura Healy, Rahel Suchintita Das, M.L. Bhavya, Shanmugapriya Karuppusamy, Da-Wen Sun, Colm O'Donnell, Brijesh K. Tiwari

Articles

This paper investigates a novel biorefinery process designed for the extraction of valuable compounds from brown seaweed Alaria esculenta using hydrodynamic cavitation (HDC). A two-stage process was developed to maximize the value of seaweed biomass by control of the processing time, solvent selection and HDC conditions to extract laminarin, alginate, mannitol and protein in a cascading manner, maximizing the value of seaweed biomass. After the first extraction stage using 0.1 M HCl, membrane ultrafiltration was employed to separate laminarin and mannitol. The purity of the laminarin and mannitol obtained was up to 86.57 ± 3.72 % and 40.49 ± 2.78 …


Marineepi: A Gui-Based Matlab Toolbox To Simulate Marine Pathogen Transmission, Gorka Bidegain, Tal Ben-Horin, Eric N. Powell, John M. Klinck, Eileen E. Hofmann 2023 Old Dominion University

Marineepi: A Gui-Based Matlab Toolbox To Simulate Marine Pathogen Transmission, Gorka Bidegain, Tal Ben-Horin, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

CCPO Publications

The Graphical User Interface (GUI) MarineEpi is presented as a Matlab toolbox for easily (i) constructing disease transmission models for different marine host-pathogen systems, (ii) running simulations by specifying initial conditions and model parameters, and (iii) interpreting the resulting time series of the host and pathogen population dynamics. MarineEpi users can generate models for systems in which pathogen transmission occurs through contact with infected individuals (SI), contact with dead infected individuals (SID), contact with environmental pathogens released by infected individuals (SIP), and contact with environmental pathogens released by dead infected individuals (SIPD). MarineEpi is a freely available GUI that provides …


Genetic Algorithm For Solving A Just-In-Time Inventory Model With Imperfect Rework Implemented In A Serial Multi-Echelon System, Hsien-Chung Tsao, Cheng-Chi Chung, Hsuan-Shih Lee, Chih-Ping Lin, Yan-Yun Tu, Ssu-Chi Lin 2023 Department of Shipping and Transportation Management, National Taiwan Ocean University, Taiwan

Genetic Algorithm For Solving A Just-In-Time Inventory Model With Imperfect Rework Implemented In A Serial Multi-Echelon System, Hsien-Chung Tsao, Cheng-Chi Chung, Hsuan-Shih Lee, Chih-Ping Lin, Yan-Yun Tu, Ssu-Chi Lin

Journal of Marine Science and Technology–Taiwan

As global industrial competition intensifies, enterprises can achieve substantial competitive advantages in the supply chain management environment by promptly meeting customer demands and efficiently reducing both supply and demand costs. This paper proposes an inventory model for supply chain optimization that considers uncertain delivery lead times and defective products. Solving the model requires solving a nonlinear mixed-integer problem, which traditionally requires considerable time. Solutions to nondeterministic polynomial-time hard problems with high complexity and difficulty are often obtained using heuristic algorithms. Among these algorithms, genetic algorithms have high efficiency and quality. Therefore, we employed a genetic algorithm to solve the proposed …


An Mrf Model-Based Study On The Effect Of Fishes Upon The Characteristics Of Flow Field Of An Aquaculture Tank, Xian-ying Shi, Zheng-zheng Huang, Meng Li, Yinxin Zhou, Xiao-zhong REN, Hang-fei LIU, Shu-peng Du 2023 College of Ocean and Civil Engineering, Dalian Ocean University, Dalian, China

An Mrf Model-Based Study On The Effect Of Fishes Upon The Characteristics Of Flow Field Of An Aquaculture Tank, Xian-Ying Shi, Zheng-Zheng Huang, Meng Li, Yinxin Zhou, Xiao-Zhong Ren, Hang-Fei Liu, Shu-Peng Du

Journal of Marine Science and Technology–Taiwan

The study aims to investigate the effect of fish movement on the flow field in the aquaculture tank of a recirculating water aquaculture system. Herein, based on the Navier-Stokes equations and the RNG k-ε turbulence model, the flow field in the aquaculture tank with fish movement was numerically simulated using the multiple reference frame (MRF) model and compared with the numerical simulation results of the fishless aquaculture tank. The results revealed that the overall mean flow velocity in the tank decreased significantly when the fish swam counter-currently with a fixed trajectory, and the overall mean flow velocity increased slightly when …


Occurrence Of Predation Of Juvenile Chum Salmon (Oncorhynchus Keta) By Chub Mackerel (Scomber Japonicus) And Spotted Mackerel (Scomber Australasicus) In Miyako Bay, Iwate Prefecture, Japan, Kei Sasaki, Miwa Yatsuya, Daisuke Shimizu, Daisuke Ojima, Shinji Komatsu 2023 Miyako Field Station, Fisheries Technology Institute, Japan Fisheries Research and Education Agency (FRA), Miyako, Iwate 027-0097, JAPAN

Occurrence Of Predation Of Juvenile Chum Salmon (Oncorhynchus Keta) By Chub Mackerel (Scomber Japonicus) And Spotted Mackerel (Scomber Australasicus) In Miyako Bay, Iwate Prefecture, Japan, Kei Sasaki, Miwa Yatsuya, Daisuke Shimizu, Daisuke Ojima, Shinji Komatsu

Journal of Marine Science and Technology–Taiwan

In recent years, chub mackerel (Scomber japonicus) and spotted mackerel (Scomber australasicus) have started migrating to the coastal areas off Iwate Prefecture earlier than they did previously, resulting in a geographic overlap between hatchery-bred juvenile chum salmon (Oncorhynchus keta) released at sea and the occurrence of predatory mackerel. To clarify whether the mackerels prey on the juvenile chum salmon, we captured adult mackerels by angling during the period when these species overlap in Miyako Bay, Iwate Prefecture. After capture, the stomach contents of the mackerel were examined using a combination of visual examinations and DNA metabarcoding analysis. As a result, …


Corals At The Edge Of Environmental Limits: A New Conceptual Framework To Re-Define Marginal And Extreme Coral Communities, Verena Schoepf, Justin H. Baumann, Daniel J. Barshis, Nicola K. Browne, Emma F. Camp, Steeve Comeau, Christopher E. Cornwall, Héctor M. Guzmán, Bernhard Riegl, Riccardo Rodolfo-Metalpa, Brigitte Sommer 2023 Old Dominion University

Corals At The Edge Of Environmental Limits: A New Conceptual Framework To Re-Define Marginal And Extreme Coral Communities, Verena Schoepf, Justin H. Baumann, Daniel J. Barshis, Nicola K. Browne, Emma F. Camp, Steeve Comeau, Christopher E. Cornwall, Héctor M. Guzmán, Bernhard Riegl, Riccardo Rodolfo-Metalpa, Brigitte Sommer

Biological Sciences Faculty Publications

The worldwide decline of coral reefs has renewed interest in coral communities at the edge of environmental limits because they have the potential to serve as resilience hotspots and climate change refugia, and can provide insights into how coral reefs might function in future ocean conditions. These coral communities are often referred to as marginal or extreme but few definitions exist and usage of these terms has therefore been inconsistent. This creates significant challenges for categorising these often poorly studied communities and synthesising data across locations. Furthermore, this impedes our understanding of how coral communities can persist at the edge …


Inferring Exposure To Harmful Pseudo-Nitzschia Blooms From Ocean-To-Estuary Gradients In Domoic Acid Concentrations In Humboldt Bay Bivalves, Natasha Hope Ficzycz Winnacott 2023 Cal Poly Humboldt

Inferring Exposure To Harmful Pseudo-Nitzschia Blooms From Ocean-To-Estuary Gradients In Domoic Acid Concentrations In Humboldt Bay Bivalves, Natasha Hope Ficzycz Winnacott

Cal Poly Humboldt theses and projects

Harmful algal blooms (HABs) result from outbreaks of any of several different species of toxin-producing phytoplankton and that can have major detrimental effects on marine ecosystems and pose severe health and economic threats to human communities. Of particular concern along the United States West Coast are HABs of pennate diatom genus Pseudo-nitzschia that produce the potent neurotoxin domoic acid (DA). The coastal ocean between Cape Mendocino, CA, and Cape Blanco, OR is a hotspot for Pseudo-nitzschia spp. HABs. Such blooms impact coastal fisheries and pose a potential threat to aquaculture operations in Humboldt Bay, California’s second largest estuary and largest …


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