Life Sciences Commons^™

Divergent Sensory Transcriptomic Profiles In Positive And Negative Learning In Bicyclus Anynana Butterflies, Yi Ting Ter, Erica L. Westerman

Biological Sciences Faculty Publications and Presentations

Mate preference learning, where individuals learn to prefer or avoid specific phenotypes during mate selection, is pervasive across animal taxa and influences reproductive isolation and trait evolution. Despite its significance, the genetic basis underlying the associated valence attribution (whether to prefer or avoid) remains largely unclear. Both in terms of what genes are associated with attributing valence, and whether valence attribution is associated with transcriptional changes in both sensory tissues and neural circuits in the brain, or is restricted to the brain. Here, we investigate the neurogenomic basis of positive and negative mate preference learning using Bicyclus anynana butterflies. We …

Investigating The Effects Of Cbd And Caffeine Interaction On Embryonic Development In Xenopus Laevis, Jeanesia M. Pierre

Theses

This study examined the interactive effects of cannabidiol (CBD) and caffeine on Xenopus laevis embryos over a 96-hour exposure period. Developmental toxicity was assessed using toxic unit isobole analysis, with LC₅₀, EC₅₀, and teratogenic index (TI) values calculated for CBD, caffeine, and mixtures at 3:1, 1:1, and 1:3 ratios.

Results showed that mixtures produced concentration-dependent interactions. When caffeine levels were higher, the mixtures displayed synergistic toxicity; as the proportion of CBD increased, the interaction shifted toward a concentration-addition model. Mortality was elevated in mixtures relative to single-compound exposures, while malformation rates decreased, indicating reduced teratogenicity. Overall, findings suggest that CBD …

Asymmetric Interdependence In Tunisian–Algerian Energy Relations, Samuel Harlow

Tunisia and Italy: Politics and Religious Integration in the Mediterranean

This research interprets contemporary Tunisian–Algerian relations through the

lens of asymmetric interdependence, offering a nuanced analysis of the power

dynamics embedded in their energy relationship. Employing a disciplined

configurative case study design, the study systematically applies established

theories of asymmetric interdependence, particularly relative vulnerability and

the influence effect, to energy trade data, oil and natural gas infrastructure, and

patterns of fiscal and emergency assistance. The analysis demonstrates that

Algerian energy policy and financial support have contributed to an

interdependent relationship in which Algeria is relatively less vulnerable than

Tunisia, generating latent conditions for economic influence without asserting

that coercive instruments …

Lingnan Gardeners Newsletter (No. 76) = 彩園通訊 (第76期), Lingnan Gardeners, Centre For Cultural Research And Development, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

No abstract provided.

Anterior Cingulate Cortex Connectivity And The Role In Neuroticism: A Diffusion-Weighted-Imaging-Based Investigation Of Limbic And Prefrontal Circuits., Jake Cox Ii

College of Arts & Sciences Senior Theses

Neuroticism is a trait which has been shown to significantly predict psychopathology. Investigating its neurobiological underpinnings may uncover a brain-based relationship that allows clinicians to conceptualize a shared predispositional factor across multiple psychopathologies, implicating treatment protocols. Inter-connectivity network and structural variation has been shown to be implicated in neuroticism, more specifically the frontoparietal network, default mode network, salience networks, and limbic networks. These networks tackle executive, salience, and emotional information, respectively. The anterior cingulate cortex (ACC) is a brain region nested between and functionally related to various networks stated above that are implicated in neuroticism. As such, it was hypothesized …

Cytotoxic Effects Of Microplastics On A549 Lung Cancer Cells, Tykel Eddy

Theses (2016-Present)

Investigation of cytotoxic effects of 10μm polystyrene based microplastics on A549 lung cancer epithelial cell line utilized multiple in-vitro assays. Cell viability was analyzed and compared between the control and treated groups using MTT assay using three separate doses (25, 50, and 100 μL). Results indicated that dosage was not a factor, but mainly, a significant time dependency of exposure to microplastics for treated cells compared to control group. Live/Dead assay gave a visual representation of microplastic cytotoxic effects as over the course of three days there was an increase of dead cells withing the treated group, as confirmed by …

Assessment Of Genes And Mirnas Expression In Alzheimer's Disease Samples Using Single And/Or Multiplex Preferential Amplification Pcr, Samanda F. Hickman

Theses (2016-Present)

Gene expression is measurable at the RNA and protein levels. It is a process by which genes produce functional products that are either non-coding RNAs or proteins. The non-coding RNAs or proteins of gene expression ultimately affect phenotype. Non-coding RNA (or mRNA) expression is measured by Northern blot or real-time quantitative PCR (RT-qPCR), while Western blot measures protein expression. Both require software to differentiate between the amounts of end products. Statistical analysis is employed to validate any differences among the measured values and to infer a correlation between the end products of various samples. There are several neurodegenerative diseases, including …

The Impact Of Long-Term Exposure To Lip Cosmetics On The Fertility Of Female Drosophila Melanogaster, Neeka Oghli

Holster Scholar Projects

Are products marketed as safe to use, truly safe to use? Inspired by an article exposing the dangers of Tampax tampons, this study examines potential reproductive risks from consumer lip products marketed as natural and safe18. Drosophila melanogaster, a model organism with genetic and reproductive similarities to humans, was utilized to test the impacts of Rhode and Avène lip cosmetics. Avène’s Cicalfate + Lips Repair Lip Balm is the closest alternative to Rhode’s unscented peptide lip treatment, which was mindfully chosen to test if affordability comes at the expense of safety. Various concentrations of these products will be exposed to …

Scalable Long-Read Nanopore Hpv16 Amplicon-Based Whole-Genome Sequencing, Maina Titus, David Giesbrecht, Cliff Oduor, Kapten Muthoka, Karamoko Niaré, Rebecca Crudale, Abebe Fola, Sin Hui, Isaac Kim Jr., Elkanah Orang'o

Obstetrics and Gynaecology, East Africa

Human papillomavirus 16 (HPV16) drives precursor cervical lesions that often progress to cervical cancer (CC). Variation within the HPV16 genome has been associated with CC risk. Here, we developed an affordable and portable amplicon-based long-read whole genome sequencing (WGS) approach using Oxford Nanopore Technologies to investigate HPV16 genetic diversity among women in sub-Saharan African countries. Applied to a control CaSki cell line and clinical samples (n = 12), our method generated complete HPV16 genomes at high coverage (median read coverage: 5,899–15,279 ×). Benchmarking our HPV16 controls showed high accuracy for two variant calling pipelines (Clair3 and PEPPER-Margin DeepVariant). Phylogenetic analysis …

Compost Grinder For The University Of South Carolina Office Of Sustainability, Rori E. Pumphrey, Grace Yaegel, Aaron R. Sawyer, Bradley White

Senior Theses

This project originates from a collaboration with the USC Office of Sustainability, which seeks to improve the handling and processing of food waste generated on campus. The primary challenge is the difficulty in composting certain types of food waste, such as avocado pits, pumpkin rinds, and other dense or fibrous organic materials that are not easily broken down using conventional methods. Existing commercial solutions are often too large and expensive, or electrically powered, and are thus not well suited for the volume or nature of USC's food waste. To address these limitations, our team designed a manually operated food waste …

Population Genomics And Status Of The Flattened Musk Turtle (Sternotherus Depressus) In The Locust Fork Of The Black Warrior River, Seamus C. O'Brien

Theses

Alabama is home to some of the highest freshwater endemism in the world and ranks near the top in numbers of endangered and extinct species. One of these endangered species is the Flattened Musk Turtle (FMT), only found in the Black Warrior River Drainage of Alabama above the Fall Line. The FMT is listed as “Threatened” by the United State Fish and Wildlife Service under the Endangered Species Act and is considered Critically Endangered by the International Union for the Conservation of Nature due to drastic declines in populations since the 1980s. Declines have been attributed to several factors, including …

Assessing Expected Cover Of Invasive Flora Species Near Corridor Features By Distance, Joshua G. Logan

Theses

Fragmentation of landscapes has been a growing topic of interest within scientific literature over the past several decades, as the way we as humans affect our planet becomes more apparent as the years go on. As humans, we have shaped the land and what it contains in immeasurable ways, erasing or forever altering entire natural ecosystems. Chief among the drivers altering these ecosystems is the fragmentation of landscapes, which can have all kinds of effects on natural ecosystems, from limiting nutrient transport to providing easier access for invasives to permeate throughout a landscape. Corridors are significant areas of interest regarding …

Beyond The Plate: Equity-Focused Solutions To Childhood Nutrition And Family Well-Being, Lynn Brann, Rachel Razza, Xiafei Wang, Kristen Davis

The Lender Center for Social Justice

Food insecurity continues to affect millions of U.S. families, with nearly one in ten households with children struggling to consistently access nutritious food. This policy brief explores equity-focused solutions to childhood nutrition and family well-being, drawing on insights from parents of young children in low-income, culturally diverse households in Syracuse, New York. Through a participatory action research approach, parents shared their experiences, challenges, and hopes for improving their children’s eating habits and preserving cultural food traditions. The findings reveal that while parents are committed to providing healthy meals, systemic barriers such as financial constraints, limited access to culturally relevant foods, …

Update On Novel, Validly Published, And Included Bacterial Taxa Derived From Nondomestic Animals And Taxonomic Revisions Published In 2024, Claire R. Burbick, Sara D. Lawhon, Trinity Krueger, Elena Ruiz-Reyes, Mallory Lenmark, Ayden Wisney-Leonard, Erik Munson

Clinical Lab Sciences Faculty Research and Publications

Description of new and revised taxa originating from non-domestic animal species continues to be pursued. The majority are bacteria isolated from the alimentary system of a variety of healthy wildlife, adding to our understanding of microbial flora present in the normal state. A few new and revised taxa are associated with disease, including a novel Erysipelothrix species associated with sepsis in albatross and a revised species, Allocoenonia anatina comb. nov., associated with Riemerella anatipestifera-like disease in ducks and geese. Representative bacteria from genera that are additionally under study for the remediation of pollutants and bacteria that are related to …

Associations Among Human Milk Polyunsaturated Fatty Acids And Infant Sleep Patterns: A Cross-Sectional Study, Ana M Palacios, Dominick J Lemas, Bridget E Young, Erik Parker, Stephanie Dickinson, Nandi Marshall, Kelly L Sullivan, Haley Wilt, Michelle I Cardel, David B Allison

Children’s Nutrition Research Center Staff Publications

Background: Infant sleep is critical for cognitive, emotional, and long-term health outcomes. Although diet-sleep relationships are established, limited research has explored how polyunsaturated fatty acids (PUFAs) in human milk (HM) relate to infant sleep.

Objectives: This study aims to examine associations between PUFAs in HM and sleep patterns in 2-mo-old infants exclusively fed with HM.

Methods: This cross-sectional secondary analysis used data from a lactation cookie trial involving 131 parents of healthy, term infants. Participants provided a fasting HM sample and completed sociodemographic and Brief Infant Sleep Questionnaire surveys. Multivariate linear models were adjusted for infant sex assigned at birth, …

All-Cause And Cause-Specific Mortality Among Patients With Narcolepsy., Chih-Wei Hsu, Yen-Shan Yang, Yang-Chieh Brian Chen, Liang-Jen Wang, Mu-Hong Chen, Yao-Hsu Yang, Chih-Sung Liang, Edward Chia-Cheng Lai

Children’s Nutrition Research Center Staff Publications

Importance: Narcolepsy is a sleep disorder potentially affecting mortality, yet evidence on this association remains sparse.

Objective: To examine whether narcolepsy is associated with an increased risk of all-cause and cause-specific mortality.

Design, setting, and participants: This retrospective cohort study used data from the Taiwan National Health Insurance Research Database (NHIRD) from 2001 to 2021, with patients followed up until death or December 31, 2022. Patients were aged 6 years or older with 2 or more narcolepsy diagnoses from psychiatrists or neurologists. Controls were selected from the NHIRD as a population-based sample. Controls without narcolepsy were matched in a 1:4 …

Menopause Factors And Alterations In Gut Microbiota And Insulin Homeostasis: A Cross-Sectional Analysis Of The Microbiome And Insulin Longitudinal Evaluation Study (Miles), Vincent J Maffei, Alain G Bertoni, Alexis C Wood, Jerome I Rotter, Osa Crago, Yii-Der I Chen, Joseph F Petrosino, Kristi L Hoffman, Mark O Goodarzi, Elizabeth T Jensen

Children’s Nutrition Research Center Staff Publications

Aim: To assess the risk for impaired insulin homeostasis as a function of menopause-related factors and gut microbiota dysbiosis in non-diabetic, post-menopausal women.

Materials and methods: Baseline data (n = 175 women) from the Microbiome and Insulin Longitudinal Evaluation Study (MILES) were used, including insulin and dysglycaemia indices calculated from a 2-h oral glucose tolerance test, untargeted peripheral metabolomics, targeted peripheral short chain fatty-acid levels and faecal bacterial microbiota surveyed by whole-metagenomic sequencing.

Results: After adjustment for covariates, menopause age < 50 years and use of hormone replacement therapy (HRT) were associated with lower Matsuda et al. insulin sensitivity index levels (β = -0.232, confidence interval (CI) = [-0.450, -0.014] and β = -0.275, CI = [-0.444, -0.107], respectively) but not pre-menopausal gynaecologic surgery. Pre-menopausal gynaecologic surgery was significantly associated with faecal microbiota beta diversity driven by a relative increase in diabetogenic Ruminococcus gnavus and Clostridium species and a decrease in protective Alistipes species and Akkermansia muciniphila relative abundances. A reduction in two glycerophospholipids in the plasmalogen class significantly statistically mediated an inverse association between gynaecologic surgery before menopause and insulin sensitivity.

Conclusions: Menopause age and history of HRT are more strongly associated with insulin resistance than gynaecologic surgery before menopause. However, …

Characterization Of Pigeonpea As An Alternate Summer Forage Crop In Virginia, Satya S. S. Narina, Glenn Chappell Iii, Harbans L. Bhardwaj

Virginia Journal of Science

Pigeonpea (Cajanus cajan L.), a major multifunctional food legume crop valued globally, contributes to food security by supplying protein-rich grain for human consumption and provides nutrient-rich biomass for livestock feeding across diverse production systems. However, little is known about its forage potential in the mid-Atlantic region of the United States. In 2009 and 2010, four cultivars (GA-1, GA-2, W-1, and W-3) were evaluated in a split-plot design with three intra-row plant populations (2, 4, or 6 plants per 0.3 m row) and three planting dates (May, June, and July). Forage yield, crude protein, minerals, and other nutritional traits were …

Integrating Food Loss And Waste Reduction Policies With Global Dietary Shifts: An Economic Modelling Study, Alessandro Gatto, Maksym Chepeliev

Department of Agricultural Economics Faculty Publications

Background

Methods

Persistent Chemicals In Particulate Matter (Pm) Near A Hazardous Waste Thermal Treatment Facility, Chuqi Guo, Martine E. Mathieu-Campbell, Thomas Blanchard, Lavrent Khachatryan, Md Abdullah Al-Mamun, Qingzhao Yu, Myron Lard, Oluwafeyikemi Ogunmusi, Brenda Vallee, Wilma Subra, Iriel Edwards, David Malone, Slawo Lomnicki, Stephania A. Cormier, Jennifer Richmond-Bryant

School of Public Health Faculty Publications

Colfax, an overburdened community in central Louisiana, hosts the last commercially-operated open-burn/open-detonation (OB/OD) hazardous waste thermal treatment facility in the United States. Until December 2023 when their permit disallowed OB/OD, the facility processed military waste, fireworks, propellants, soils excavated from Superfund sites, and other hazardous materials. This community-engaged study measured ambient fine particulate matter (PM2.5), environmentally persistent free radicals (EPFRs), polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), and metals using two high-volume PM2.5 samplers deployed 1.2 mi and 9.0 mi from the facility from April, 2022 through February, 2023. Elevated PM2.5 concentrations were recorded at both sites during spring and summer 2022. …

Minority Farmer And Rancher Delinquency And Local Cultural Climate: Evidence From Farm Service Agency's County Office Committees, Lawson Connor, Bruce L. Ahrendsen, Charles B. Dodson, Logan Moss

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Farm delinquency is linked to many negative indicators of farm survival, including increased risk of bankruptcy and farm failure. Minority farmers and ranchers (MFR) have been found to exhibit higher rates of delinquency on U.S. Department of Agriculture (USDA) Farm Service Agency (FSA) loans compared to their non-Hispanic White male counterparts. These findings persist even after accounting for economic/financial factors expected to predict loan repayment performance. In this study, to further explore the existing discrepancy between loan default rates for MFR and White, non-Hispanic borrowers, we look more broadly than financial indicators and introduce MFR representation on the FSA County …

Measuring The Impact Of Hurricane Incidence On Agricultural Production Risk Using Insurance Data, Hunter D. Biram, Micah Cameron-Harp, Jesse Tack

Agricultural Economics and Agribusiness Faculty Publications and Presentations

Hurricanes are considered among the most destructive natural disasters in the United States. The exposure of agricultural production systems to hurricanes varies between regions in contrast to global risks like commodity price volatility and international trade policies. The regional differences in hurricane exposure may lead to heterogeneity in crop insurance premium rates. This work aims to measure the impact of hurricane incidence on production losses for crops grown in the Mississippi Delta. We leverage a county-month panel of insurance losses spanning 2002-2021 from the US Department of Agriculture Risk Management Agency, and daily data from the National Oceanic and Atmospheric …

Identifying Land Snails, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

Snails can be voracious eaters, destroying leafy vegetables, cereal crops, pasture grasses and some native plants. From time to time, exotic snails are intercepted in cargo, machinery, vehicles and packaging and then destroyed.

Snail species may be native or already established in Westen Australia; however, your reports will help detect exotic snails early and prevent them from invading gardens, agriculture and the environment.

Adipokines Mediate Fat-To-Ovary Communication To Regulate Oogenesis, Adipocyte Size, And Lipid Storage In Drosophila Melanogaster, Chad Herbert Simmons

Theses and Dissertations

Humans have complex signaling pathways that allow them to store and expend energy based on nutritional quality and availability. Inter-organ signaling is used to communicate nutrient availability between organs based on nutritional needs and the rate of cellular division. Our main overarching question is to investigate how fat-derived signals affect adipocyte morphology and the maintenance of stem cells in the ovary. While signaling pathways, like insulin and mTOR, and some adipokines that are involved in inter-organ nutrient sensing have been identified, the exact nutrient reliant mechanisms of stem cell maintenance are not completely understood. Using Drosophila melanogaster as a model, …

Investigation Of Metals And Incidental Nanomaterials In Wildland-Urban Interface Fire Ashes And Their Impacts On Marine Phytoplankton, Talal Abdullah Alshehri

Theses and Dissertations

Wildfires are natural processes that have played a vital role in ecosystems for millions of years. However, with increasing anthropogenic activities and climate change, wildfires' frequency and intensity have increased. A wildfire is an uncontrolled fire that burns forests, grasses, and savannas. In addition to vegetation combustible materials, wildfire burn structure items such as homes, stores, and storage sheds in areas where the transition zone between urban and wildland is defined as the wildland-urban interface (WUI). Moreover, wildfires in WUI can burn vehicles, including automobiles, tractors, and boats on trails. Recently, there have been concerns regarding the metals, metalloids, and …

The Brain-Derived Neurotrophic Factor (Bdnf) And Its Importance To Organism Survival And Development, Christopher Monnett Smith

Holster Scholar Projects

Brain-Derived Neurotrophic Factor (BDNF) has been the subject of numerous studies regarding the functioning of the brain in relation to topics such as neural plasticity and neural survival. However, BDNF has also been implicated in the induction of changes not only in neural tissue but multiple other tissue types across the human body. The aim of this literature review is to provide a comprehensive, yet brief, overview of BDNF’s influence on the functioning of the nervous, cardiovascular, respiratory, muscular, and immune systems.

Investigating The Presence Of R-Loops At The Centromeres Of Drosophila Melanogaster, Daniel D'Souza

Holster Scholar Projects

This study investigates the presence and localization of R-loops at the centromeres of Drosophila melanogaster. R-loops are non-canonical nucleic acid structures that have been implicated in various cellular processes, including genomic instability and accurate chromosome segregation. Although previous research has found R-loops at Drosophila satellite sequences and LTR retrotransposons, their presence and function at the centromeres of a whole organism remain largely unknown. Using IF-FISH (immunofluorescence-fluorescence in situ hybridization), we stained R-loops with the S9.6 antibody. A UAS-rnh1 overexpression line was used to induce the overexpression of RNase H1, an enzyme that resolves R-loops, to confirm the specificity of …

Does Increasing Canopy Liana Density Decrease The Tropical Forest Carbon Sink?, Stefan A. Schnitzer, David M. Defilippis

Biological Sciences Faculty Research and Publications

The ongoing decline in the American tropical forest carbon sink has serious ramifications for atmospheric carbon levels and global climate change. Increasing liana abundance may explain the decaying carbon sink because lianas reduce canopy tree growth and survival, which limits forest carbon storage. However, canopy lianas, not solely understory lianas, would have to be increasing for this hypothesis to be credible because canopy lianas compete especially intensely with canopy trees. We examined the change in canopy lianas over 10 years on Barro Colorado Island (BCI), Panama to test two main hypotheses. (1) Canopy lianas are increasing on BCI. (2) Increasing …

Assessing The Effectiveness Of Bridge Grate And Pipe Cattle Guard Designed To Mitigate Ocelot Road Mortality On Texas State Highway, Rupesh Maharjan, John H. Young Jr., Kevin W. Ryer, Md. Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

The mitigated and fenced section of State Highway 100, extending from Laguna Vista to Los Fresnos, includes five wildlife crossing structures and 16 modified cattle guards (also called wildlife guards) installed to mitigate ocelot road mortality. Bridge grate and pipe wildlife guards were deployed at vehicle entries, and we evaluated their effectiveness in preventing meso-carnivores and ungulates from entering the roadway through the fence gaps from April 2020 to 2024. Wildlife guards collectively were >82% effective in repelling ungulate attempts to enter the roadway, while only 16.64% of meso-carnivore attempts were repelled. The pipe wildlife guard (PWG) design repelled 86.79% …

Harnessing Rice Glutelin And Chickpea Proteins Interactions To Enhance Functional And Nutritional Qualities Of Plant-Based Cheese, Nikitha Modupalli, Md Mahfuzur Rahman

Food Science Faculty Publications and Presentations

The recent demand for plant-based dairy alternatives has increased the focus on improving the organoleptic, and nutritional attributes of plant cheeses to match their dairy counterparts. This study aimed to develop a functional cheese using the synergistic interactions of rice glutelin and chickpea proteins to enhance both nutritional and textural properties. Functional characterization revealed that rice glutelin exhibited a higher water-holding capacity of 340 % and elevated solubility, while chickpea protein showed a superior oil-holding capacity of 550 % and higher surface hydrophobicity. Cheeses were prepared using a 40:60 blend of rice glutelin to chickpea protein, which yielded 21.3 % …