Life Sciences Commons^™

Evaluating Soil Responses To Three Different Tillage Practices, Robert L. Burchett, Cordale L. Straub Senior, Logan D. Renfrow Sophomore

Scholars Week

Evaluating Soil Responses to Three Different Tillage Practices

Luke Burchett, Logan Renfrow, and Cordale Straub

Mentor: Dr. Iin Handayani Ph.D

Hutson School of Agriculture, Murray State University, Kentucky, USA

ABSTRACT

Tillage systems can greatly affect soil health by changing its structure, chemistry, and biological activity. This study examined how soil organic carbon (SOC), soil pH, soil moisture, soil organic matter (SOM) responds under three tillage systems: no-till, biannual tillage, and conventional tillage. Soil samples were taken from a 1–7.6 cm depth during September 2025 across three locations. The no-till site was located in Caldwell County, Kentucky, on an irrigated double-crop …

Impact Of Crop Rotation And Species Variation On Soil Quality Indicators, Somasekhar Auduti, Uday Kiran Pittala, Pratibha Adhikari

Scholars Week

Impact of Crop Rotation and Species Variation on Soil Quality Indicators

Pratibha Adhikari, Somasekhar Auduti, Uday Kiran Pittala

Mentor: Dr. Iin P. Handayani, Ph.D.

Hutson School of Agriculture, Murray State University, Murray, KY, USA

Designing crop rotations that counter the negative effects of monocropping requires crop choices that build carbon and create stable pore structure. The objective of this research was to evaluate the effects of crop rotation on selected soil health indicators and to interpret soil health conditions across agricultural fields. Soil samples were collected from West Farm, Murray, KY, from six crop fields—corn, soybean, tobacco, millet, cotton, and …

Assessing Soil Properties Under Pastures Managed For Different Livestock Systems In Western Kentucky, Chandralekha Joga Miss

Scholars Week

Soil health plays a vital role in sustainable agriculture, particularly in pasture-based livestock systems that influence physical and chemical soil properties. This study evaluated the effects of different livestock systems on surface soil characteristics in western Kentucky. Soil samples were collected from September 16 to September 22, 2025. Six fields were selected, representing beef, equine, swine, sheep/goat, poultry, and control (no livestock) systems. Both disturbed and undisturbed samples were collected from one soil depth (0–7.5 cm) to assess physical and chemical properties including bulk density (BD), total porosity, macroporosity, soil water holding capacity (SWHC), soil water at field capacity (SWFC), …

Shaping The Soil: A Comparison Of Equine, Bovine, And Ungrazed Hay Fields, Brody Ellis Higgs, Taylor Madison Wynn, Scottie Craig Berry

Scholars Week

Shaping the Soil: A Comparison of Equine, Bovine, and Ungrazed Hay Fields

Brody Higgs, Taylor Wynn, and Scottie Berry

Mentor: Dr. Iin. P. Handayani, PhD.

Hutson School of Agriculture, Murray State University, Murray, Kentucky, USA

ABSTRACT

Kentucky raises grazing species for multiple reasons, including food, recreation, and show. The most common of them are equine and bovine. These animals graze many acres across the state of Kentucky and impact soil properties in their pastures. This study was conducted on three pasturelands across Caldwell and Calloway counties in Kentucky. The pastures consisted of a cow pasture, a horse pasture, and a …

Assessing Soil Quality Indicators In Leguminous And Non-Leguminous Cropping Systems, Kabita Budthapa, Kranthi Vinukonda, Ramya Sree Teeguri

Scholars Week

It is crucial to understand how different cropping systems influence soil health to boost the efficiency of resources and sustainable agricultural outputs. This study examined the effects of leguminous (soybean and pea) and non-leguminous (sunflower and maize) cropping systems on selected soil characteristics. On September 16th, 2025, soil samples (24 disturbed and 24 undisturbed) were collected from the 0-7.5 cm depth of West Farm, Murray, Kentucky. Disturbed samples were analyzed for pH, soil organic matter (SOM), and soil organic carbon (SOC), while undisturbed samples were used to determine bulk density, porosity, soil water holding capacity (SWHC), and soil water field …

Comparative Assessment Of Soil Properties In Cropland And Forested Areas In Western Kentucky, Shiba Hari Dhakal, Abinash Dhungana, Ramson K C

Scholars Week

Soil health is profoundly influenced by its physical and chemical properties. These properties rely on land use systems; consequently, impact on soil functions and agricultural sustainability. The objective of this study was to determine selected physical and chemical properties affected by crop and forest management in Western Kentucky. Two crop and two forested areas with six replications each were selected for this study in September 2025 in Calloway County, Kentucky. A total of 24 disturbed and 24 undisturbed soil samples were collected at 0-7 cm depth. Disturbed samples were analyzed for soil pH, soil organic matter (SOM), and soil organic …

Evaluating Fungicide Efficacy In One And Two-Pass Fungicide Programs, Carson Buchanan

Scholars Week

Evaluating Fungicide Efficacy in One and Two-Pass Fungicide Programs

Carson Buchanan

Mentors: Dr. Megan Taylor, Dr. Iin Handayani

Murray State University, Murray, Kentucky, USA Abstract

Plant diseases continually threaten corn yields year after year. This study compared regionally important corn hybrids in a one-pass and two-pass application system. Eight rows of sixteen hybrids were planted in a field in Bargersville, Indiana. These hybrids consisted mostly of regionally important Dekalb hybrids, along with some competitive Pioneer hybrids. The entire field then got a V8 application of Stratego YLD. The field was then split in half and one half of the field …

Adaptation Of Exome Sequencing Methods For Low-Quality Genomic Dna Extracted From Aged Fta Micro-Cards In Sudden Death Investigations, Gerges Samir Nazir

Thesis/ Dissertation Defenses

DNA degrada􀆟on and insufficient gDNA quan􀆟ty and purity, preserving genomic DNA on FTA Micro-Cards presents substan􀆟al difficul􀆟es for forensic inves􀆟ga􀆟ons of unexpected fatali􀆟es. Through the use of lowquality genomic DNA recovered from four-year-old dried blood using FTA Micro-Cards, this effort seeks to enhance and op􀆟mize exome sequencing. Samples were sequenced using Next-Genera􀆟on Sequencing (NGS) with Illumina DNA Prep with Exome 2.0 Plus Enrichment with mitochondrial panel, star􀆟ng at 0.1 ng/μl of gDNA.To improve the coverage of mitochondrial genes, a mitochondrial DNA spike-in was included, and the samples were sequenced using the NextSeq 1000/2000 pla􀆞orm, employing the onboard DRAGEN Enrichment Pipeline …

A Fine Lady And Excellent Field Botanist: Sister Remberta Westkaemper, O.S.B., Stephen G. Saupe

Biology Faculty Publications

This report provides a brief biography of Sister Remberta and an overview of her botanical activities

Red Snapper (Lutjanus Campechanus) Neurocranium, Riley B. Glogowski, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

New Butterfly Taxa And Findings From Genomic Analyses, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Continuing our genomics-driven exploration of butterfly taxonomy, we integrate phylogenetic trees from all protein-coding genes with existing taxonomic and phenotypic knowledge and uncover further insights into butterfly systematics. As a result, one subgenus, 44 species, and 11 subspecies are proposed as new (type species in original combinations or type localities are listed in parentheses): Porphaurea Grishin, subgen. n. (Phoenicops porphyropis Meyrick & Lower, 1902) of Chaetocneme C. Felder, 1860 in Hesperiidae Latreille, 1809; Dione (Agraulis) lamasi Grishin, sp. n. (Peru: Cuzco) in Nymphalidae Rafinesque, 1815; Lasaia (Lasaia) chiapis Grishin, sp. n. (Mexico: Chiapas), Lasaia …

Artificial Light At Night Can Worsen Competitive Outcomes Between Native And Invasive Grasses, Shannon M. Murphy, Kylee Grenis, Anna A. Sher

Biological Sciences: Faculty Scholarship

Artificial light at night (ALAN) is an important global disturbance that affects community dynamics, but how it affects species interactions, such as competition, is not well understood and needs investigation. In plant communities, some exotic-invasive plant species seem to be facilitated by ALAN, which may alter competitive outcomes with native plant communities and promote invasion. Despite these intriguing results, whether ALAN affects competitive outcomes between native and invasive species is understudied. Here we tested how ALAN affects competitive outcomes between two native prairie grasses and two grasses that are exotic-invasive in North America. We planted each native species with a …

Disparate Leukemia Mutations Converge On Nuclear Phase-Separated Condensates, Gandhar K Datar, Elmira Khabusheva, Archish Anand, Joshua Beale, Marwa Sadek, Chun-Wei Chen, Evdokiia Potolitsyna, Nayara Alcantara-Contessoto, Guangyuan Liu, Josephine De La Fuente, Christina Dollinger, Anna Guzman, Alejandra Martell, Katharina Wohlan, Abhishek Maiti, Nicholas J Short, S Stephen Yi, Vibeke Andresen, Bjørn Tore Gjertsen, Brunangelo Falini, Rachel E Rau, Lorenzo Brunetti, Nidhi Sahni, Margaret A Goodell, Joshua A Riback

Faculty, Staff and Students Publications

During cancer development, mutations promote changes in gene expression that cause transformation. Leukemia associated with aberrant HOXA expression is driven by translocations of nucleoporin genes or KMT2A as well as mutations in NPM1. The mechanistic convergence of these disparate mutations remains elusive. Here, we demonstrate that mutant nucleophosmin 1 (NPM1c) forms nuclear condensates in human cell lines, mouse models, and primary patient samples. We show NPM1c phase separation is necessary and sufficient to recruit NUP98 and KMT2A to condensates. Through extensive mutagenesis and pharmacological destabilization of phase separation, we find that NPM1c condensates are necessary for regulating gene expression, promoting …

Serum Response Factor Is Essential For Endometrial Function And Prevention Of Inflammatory Fibrosis, Ryan M Marquardt, Sara A Grimm, San-Pin Wu, Peter F Lais, Shu-Yun Li, Xin Xu, Erin Smithberger, David Cunefare, Charan Ganta, David Olson, Eunhee M Jeong, Jae-Wook Jeong, Bruce A Lessey, John P Lydon, Francesco J Demayo

Faculty, Staff and Students Publications

Pregnancy requires a supportive uterine environment facilitated by steroid hormone–regulated differentiation of endometrial stromal fibroblasts into decidual cells and tight control of inflammation. Serum response factor (SRF) is a widely expressed transcription factor essential for mesenchymal cell growth and differentiation with noted roles in hormonal regulation of muscle tissues but little characterization in reproductive organs. Here, we reveal that endometrial SRF is dysregulated in human endometriosis and is critical for female reproductive success in mice through regulation of endometrial stromal and epithelial cells. Immunohistochemical analysis identified decreased endometrial SRF expression in infertile endometriosis patient tissues. RNAi-based SRF knockdown in human …

A Study Of Nonlinear Duffing Equations Using The Haar Wavelet Method, Kumbinarasaiah S., Yeshwanth R., Nandeesh K C.

Mansoura Engineering Journal

The main goal of this study is to solve Duffing equations, which are nonlinear differential equations (DEs), using the Haar wavelet technique. The solutions to this equation for an externally pushed and damped oscillator show intriguing dynamic behavior. Mathematicians have recently become more interested in wavelet analysis because of its real-world applications. A few real-world problems have been considered to assess the current methodology. Here, the (OMI) Operational Matrix of Integration and collocation points transform the non-linear ODEs into a system of nonlinear algebraic equations. The resulting system of algebraic equations is then solved using the Newton-Raphson technique to retrieve …

Therapeutic Potential Of Prmt1 As A Critical Survival Dependency Target In Multiple Myeloma, Tabish Hussain, Sharad Awasthi, Farid Shahid, S Stephen Yi, Nidhi Sahni, C Marcelo Aldaz

Faculty, Staff and Student Publications

Multiple myeloma (MM) is a neoplasm of antibody-producing plasma cells and is the second most prevalent hematological malignancy worldwide. Development of drug resistance and disease relapse significantly impede the success of MM treatment, highlighting the critical need to discover novel therapeutic targets. In a custom CRISPR/Cas9 screen targeting 197 DNA damage response-related genes, Protein Arginine N-Methyltransferase 1 (PRMT1) emerged as a top hit, revealing it as a potential therapeutic vulnerability and survival dependency in MM cells. PRMT1, a major Type I PRMT enzyme, catalyzes the asymmetric transfer of methyl groups to arginine residues, influencing gene transcription and protein function through …

Effects Of Combining Traditional East Asian And Conventional Western Medicine On Acute Stroke Outcomes, Dong-Seok Gwak, Jong-Sik Lee, Dawid Schellingerhout, Jinyong Chung, Hyerin Oh, Sang-Wuk Jeong, Ji Sung Lee, Hee-Joon Bae, Mikyung Kim, Dong-Jun Choi, Dong-Eog Kim

Faculty, Staff and Student Publications

Background: Traditional East Asian medicine (TM) is widely used in Korea and other East Asian countries. However, the effects of TM treatment on acute ischemic stroke (AIS) outcomes remain unclear, as previous studies lacked a sufficient sample size, a consecutive series design, or a prospective outcome capture approach. We aimed to investigate whether combining TM with conventional Western medicine (CM) treatments (C+TM) leads to better outcomes after AIS, relative to CM treatment alone.

Methods: We retrospectively analyzed 2157 consecutive patients with AIS from a prospectively collected registry (2011-2021) at our center and compared the CM and C+TM groups in terms …

Pregnancy Outcomes In Women With Heritable Thoracic Aortic Disease: Data From The Eorp Esc Registry Of Pregnancy And Cardiac Disease (Ropac) Iii, Puck N J Peters, Johanna A Van Der Zande, Julie De Backer, Guillaume Jondeau, Osama Ahmad, Marjorie Richardson, Francesca M Comoglio, Heleen Van Der Zwaan, Siddharth K Prakash, Christina Christersson, Karishma P Ramlakhan, Roger Hall, Mark R Johnson, Jolien W Roos-Hesselink, Ropac Investigators

Faculty, Staff and Student Publications

Aims: The risk of pregnancy in women with heritable thoracic aortic disease (HTAD) is estimated to be high, but supporting data are scarce. The aim of this study is to prospectively investigate pregnancy outcomes to improve patient management and care.

Methods and results: The Registry of Pregnancy and Cardiac disease (ROPAC) III is a prospective global registry including pregnant women with known aortic pathology between 2018 and 2023. Cardiac, obstetric and fetal outcomes, beta-blocker use, and the impact of breastfeeding were investigated. Additionally, changes in aortic diameters were assessed. In total, 176 pregnancies in 170 women (mean age 32 years, …

Improving Coral Restoration Outcomes Through Novel Molecular Applications, Matthew H. Gamache

USF Tampa Graduate Theses and Dissertations

Coral reef ecosystems are declining globally from numerous stressors, including localized pollution, disease, and marine heatwaves induced by climate change. To preserve these ecosystems, it is critical to identify corals that can withstand stressors—primarily future marine heatwaves—and prioritize them for coral restoration efforts until these stressors are mitigated. Coral responses to thermal stress can be influenced by several partners, including mutualistic microalgae and a vast prokaryotic community. Here, I use advanced molecular techniques to examine which partners (coral host, algal symbiont, and microbial communities) are associated with coral health, how they contribute to holobiont physiology, and their potential to increase …

Two-Year Skeletal Adaptations In Development And National Level Female Figure Skaters, Chelsea Wong, Leigh Gabel, Erik Groves, Kelly Quipp, Steven Boyd, Lauren Burt

International Journal of Exercise Science

International Journal of Exercise Science 18(3): 1297-1309, 2025. https://doi.org/10.70252/ZSKN7069 Figure skaters typically have higher bone mineral density (BMD) than the general population. However, the current literature is limited to cross-sectional studies. The objective of this study was to determine two-year changes in volumetric BMD, bone microarchitecture, and estimated bone strength in elite national and development level Canadian figure skaters. Eleven female figure skaters aged 14+ years were recruited for this longitudinal study. Measurements occurred annually. High-resolution peripheral quantitative computed tomography (HR-pQCT) scans of the radius and tibia underwent three-dimensional image registration. Total (Tt), cortical (Ct) and trabecular (Tb) volumetric BMD …

Deforestation Affecting Developing Nations, Nicole Villa

Sustainability Conference

Deforestation continues to be a growing problem around the globe, while it is affecting wildlife what can be overlooked is the challenges it’s creating for the livelihood of nations. This goes beyond losing the biodiversity of our ecosystems but social consequences with the scarcity of water in Malawi, rise in health risks in Democratic Republic of Congo and negative effects of agricultural expansion in Belize. Overall social conflict in these areas that are suffering to grow. Furthermore, I aim to cover the major challenges previously mentioned followed by counteracts of deforestation including action plan in Brazil, efforts of other countries …

What’S On Our Shores? A Study Of Marine Debris And Cigarette Litter Concentrations In Daytona Beach, Fl., Noelle-Marie T. Steele, Lisa Glover, Parisa Embrahimbabaie Dr, Kelly Sanantonio, Hyun Jung Cho Dr

Sustainability Conference

Marine debris, defined by the National Oceanic & Atmospheric Administration (NOAA), is any persistent, artificial, or processed solid material discarded into the marine and coastal environment. This growing global issue poses significant threats to marine life, coastal ecosystems, and human health. The present study aimed to assess the amount and types of marine debris, with an emphasis on cigarette butts, at two public beaches in Daytona Beach, Florida, a highly urbanized and heavily visited tourist location. Field surveys were conducted from April through July 2025 at the oceanfront beaches of Sunsplash Park and Main Street Pier using transect-based NOAA Marine …

Solvent Extracts Of Pulvigera Papillosa (Orthotrichaceae) Show No Antimicrobial Properties In Disk Diffusion Tests, Ryan A. Solorzano, Justin Paulin, Grayson Prater, Michael Lanier

Humboldt Journal of Microbiology

Abstract As antibiotic-resistant bacteria become more prevalent, the search for novel forms of antibiotics in the natural world has become an increasingly worthwhile endeavor. Many mosses have been found to contain antimicrobial properties, including those in the family Orthotrichaceae. Pulvigera papillosa, an Orthotrichaceous moss native to California, has thus far not been investigated to determine whether it contains antimicrobial properties. Extraction techniques using polar and nonpolar solvents have proven to be effective in extracting the secondary metabolites that allow mosses to defend themselves against a hostile microbial world. This study takes a preliminary look into the antimicrobial properties of P. …

Assessing Antimicrobial Properties Of Plant-Derived Ellagic Acid Supplements, Noah S. Schuhmann, Andrew Mclaughlin, Julian Barrera

Humboldt Journal of Microbiology

Bacteria present in the human gut microbiota are affected by compounds with antimicrobial properties. Phenolic compounds extracted from plants have been shown to exhibit significant antimicrobial capacity at certain concentrations, which makes them an area of interest to researchers. Ellagic acid is one such phenolic compound, present in nuts and berries that many people consume on a regular basis. Supplements containing concentrated ellagic acid provide an additional source for the compound. It is known that, in the body, ellagic acid is metabolized into urolithins, which contribute to health through their anticancer and anti-inflammatory qualities. In this study, we investigated the …

Comparative Analysis Of Probiotic Viability In Alcoholic And Non-Alcoholic Kombucha, Isabella N. Cerrone, Brooke Pirkle, Danielle Williamson, Gianna Vendrell, Chloe Kraft

Humboldt Journal of Microbiology

Kombucha is a fermented tea beverage valued for its probiotic and antimicrobial properties that arise from complex molecular interactions between yeast, acetic acid bacteria (AAB), lactic acid bacteria (LAB), and metabolic byproducts of fermentation. With the rising demand for non-alcoholic versions of traditionally alcoholic kombucha beverages, ethanol reduction methods have become common, though their impact on probiotic viability and antimicrobial properties remains poorly understood. This study investigates the effects of ethanol removal on kombucha’s functional properties, including probiotic survival, antimicrobial activity, and organic acid composition (pH). We compared alcoholic and non-alcoholic versions of JuneShine kombucha across five flavors. Probiotic viability …

Growth Trends In Abundance And Diversity Of Synthetic Microbial Communities Over Varying Thermal Conditions, Mariska M. Kessler, Jocelyn Wolfinger, Destiny S. Alcaraz

Humboldt Journal of Microbiology

Microorganisms create various communities that act as the foundation of ecosystems. Abiotic factors such as temperature variability and environmental fluctuations are known to produce shifts in the abundance and diversity of microbial communities, but our current understanding is limited. In this study, we aimed to address this gap by observing abundance and diversity growth patterns under different temperature conditions within individual species and communities. Samples of 4 isolates and 4 artificial communities were grown at constant and fluctuating temperatures. Results found that the isolate samples had the highest abundance under constant high temperatures, whereas the community samples had the highest …

Elucidating The Relationship Between Water Quality And Antibiotic Resistance Of Rainwater Microbes Across Western Humboldt County, Theo P. Murphy, Eve Wendley, Justice Laskowski, Tyler Paredes

Humboldt Journal of Microbiology

Limited studies have been conducted regarding the fecal contamination and microbial dispersal through rainwater, with no known studies investigating the potential connection between antibiotic resistant microbes and water quality in rainwater. This study seeks to identify the presence of a correlation between water quality and incidence of antibiotic resistance in rainwater microbes. We hypothesize that there will be a correlation between these two variables. We additionally anticipate a high incidence of fecal contamination across rural and urban collection sites alike, with fecal contamination being more prevalent in rural areas than urban locals. To determine water quality, we measured the concentration …

Comparative Analysis Of Taproot And Fibrous Root System Microbiomes Under Flooding Stress, Natalie S. Kozlowski, Leighanna Jake

Humboldt Journal of Microbiology

There has been increased interest in understanding how the microbiomes of vascular plants respond to flooding stress and, many studies have focused on monocotyledonous plants with fibrous root systems. This leaves a gap in knowledge of dicotyledonous plants with taproot systems, as previous studies have been in the context of flooding to cropland affecting major food crops which are often monocotyledonous plants with fibrous root systems. Since the structural and functional differences between these root systems may influence microbial community stability and response to flooding conditions, a study looking at both is long overdue As such, this study aims to …

Increasing Pediatric Hpv Vaccination Rates, Brooke A. Nicholas

Dissertations

Increasing Pediatric HPV Vaccination Rates

Abstract

Problem: The human papillomavirus (HPV) is a sexually transmitted infection that affects more than 80% of the population within the United States (Eisenhauer et al., 2020). HPV can develop into cervical, anogenital, and oropharyngeal cancers (Eisenhauer et al., 2020). About 4,000 individuals die from cervical cancer alone each year (O’Leary, 2022). The HPV vaccine, though recommended by the ACIP and AAP, is below national vaccination rates in comparison to other vaccines (O’Leary, 2022).

Methods: This quality improvement project is a non-randomized controlled trial that observed HPV vaccine dose completion rates for patients aged 9-14 …

Selecting Irrigated Alfalfa Varieties, Mckenna S. Barney, Earl Creech, Matt Yost

All Current Publications

Selecting an alfalfa variety is one of the most important decisions an alfalfa producer can make and is the cornerstone of successful alfalfa production. Variety selection directly impacts yield potential, forage quality, stand persistence, pest and disease resistance, and environmental adaptation—all factors that can have a major economic impact. Informed decisions can be made by carefully considering the goals of your operation and adhering to the criteria outlined in this fact sheet.