Life Sciences Commons^™

Ted Ayres, Social Justice And Education Advocate: "Making It Count" With Book Reviews, Kristen P. Erdem

Journal of Multicultural Affairs

This is an interview article with a prolific reviewer of books seen on public television and in print. Ted Ayres had an inspired legal career, and his advocacy continues to this day. The year 2020, like no other year in our recent U.S. history, was a raucous reckoning for an array of social justice issues. As this theme continues in 2021, it is heartwarming getting to know a quiet advocate in our midst. Meet Ted Ayres. Ayres will be a contributor to the journal with book reviews. This is an introduction to the person, Ted Ayres as social justice and …

How The Common School Has Failed Hispanic Children—Witnessing The Severe Regression Of Language English Proficient Learners During A Pandemic: Teaching During Covid-19, Yvonne S. Herrera

Journal of Multicultural Affairs

Personal reflection on the impacts of the common school on Hispanic children during the COVID-19 pandemic, when Hispanic children experienced less opportunities in becoming educated due to lack of accessible technology.

Overview: From The Desk Of The Guest Editor, Tonya Huber

Journal of Multicultural Affairs

Overview from the Guest Editor on this special issue on the impacts of Covid-19 in educational settings. One theme explored in the contents of this issue is the powerlessness many educators felt as the editors set out to hear, comprehend, represent, and amplify their experiences. Other themes include: appreciation and empathy, focusing on what matters, and new ways of teaching with technology.

Cognitive Ecology Of Color Vision In Orchid Bees, Andreia Queiroz Santos A Figueiredo

Dissertations

Animals interact with their environment and acquire information from it. Information can be processed by their sensory systems and influence behavior, often mediated through mechanisms of decision-making and learning. Animal pollinators acquire information from flowers and use this information to make decisions about the flowers they visit. My research aimed to understand the role of color vision in a tropical pollinator, the orchid bee Euglossa dilemma. Chapter 1 is a review exploring pollination through the lens of prepared learning. Prepared learning proposes that animals learn some associations better than others due to an evolved match with the environment. I …

Using Multiple Taxa And Wetland Classification Schemes For Enhanced Detection Of Biological Response Signatures To Human Impairment, Walter Veselka Iv, Walter S. Kordek, James T. Anderson

Faculty & Staff Scholarship

Wetland indices of biological integrity (IBIs) are a common component in monitoring the wetland water resources as required by the United States’ Clean Water Act (CWA). The effectiveness of an IBI to monitor disturbance is dependent on the metrics being consistently responsive to measures of human disturbance within a described classification category. We present IBIs designed for two types of commonly used wetland classification systems – the hydrogeomorphic (HGM) and the National Wetlands Inventory (NWI). The metrics making up the IBIs were derived from anuran, avian, macroinvertebrate, and vegetation communities; each representing increasing levels of resources associated with gathering the …

Considerations And Best Practices In Animal Science 16s Ribosomal Rna Gene Sequencing Microbiome Studies, Margaret D. Weinroth, Aeriel D. Belk, Chris Dean, Noelle Noyes, Dana K. Dittoe, Michael J. Rothrock Jr, Steven C. Ricke, Phillip R. Myer, Madison T. Henniger, Gustavo A. Ramírez, Brian B. Oakley, Katie Lynn Summers, Asha M. Miles, Taylor B. Ault-Seay, Zhongtang Yu, Jessica L. Metcalf, James E. Wells

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Microbiome studies in animal science using 16S rRNA gene sequencing have become increasingly common in recent years as sequencing costs continue to fall and bioinformatic tools become more powerful and user-friendly. The combination of molecular biology, microbiology, microbial ecology, computer science, and bioinformatics—in addition to the traditional considerations when conducting an animal science study—makes microbiome studies sometimes intimidating due to the intersection of different fields. The objective of this review is to serve as a jumping-off point for those animal scientists less familiar with 16S rRNA gene sequencing and analyses and to bring up common issues and concerns that arise …

Structure Of A Monomeric Photosystem Ii Core Complex From A Cyanobacterium Acclimated To Far-Red Light Reveals The Functions Of Chlorophylls D And F, Christopher J. Gisriel, Gaozhong Shen, Ming-Yang Ho, Vasily Kurashov, David A. Flesher, Jimin Wang, William H. Armstrong, John H. Golbeck, Marilyn R. Gunner, David J. Vinyard, Richard J. Debus, Gary W. Brudvig, Donald A. Bryant

Publications and Research

Far-red light (FRL) photoacclimation in cyanobacteria provides a selective growth advantage for some terrestrial cyanobacteria by expanding the range of photosynthetically active radiation to include far-red/near-infrared light (700–800 nm). During this photoacclimation process, photosystem II (PSII), the water:plastoquinone photooxidoreductase involved in oxygenic photosynthesis, is modified. The resulting FRL-PSII is comprised of FRL-specific core subunits and binds chlorophyll (Chl) d and Chl f molecules in place of several of the Chl a molecules found when cells are grown in visible light. These new Chls effectively lower the energy canonically thought to define the “red limit” for light required to drive photochemical …

A Coral Spawning Calendar For Sesoko Station, Okinawa, Japan, Andrew H. Baird, Alasdair J. Edwards, James R. Guest, Saki Harii, Masayuki Hatta, Liam Lachs, Hanaka Mera, Frederic Sinniger, David Abrego, Or Ben-Zvi, Omri Bronstein, Patrick C. Cabaitan, Vivian R. Cumbo, Gal Eyal, Lee Eyal-Shaham, Bar Feldman, Joana Figueiredo, Jean-François Flot, Mila Grinblat, Andrew Heyward, Michio Hidaka, Mamiko Hirose, Akira Iguchi, Naoko Isomura, Robert A. Kinzie, Seiya Kitanobo, Alyson Kuba, Oren Levy, Yossi Loya, Takuma Mezaki, Amin R. Mohamed, Masaya Morita, Satoshi Nojima, Yoko Nozawa, Rian Prasetia, Eneour Puill-Stephan, Catalina Ramirez-Portilla, Hanna Rapuano, Yaeli Rosenberg, Yusuke Sakai, Kazuhiko Sakai, Tom Shlesinger, Tullia I. Terraneo, Irina Yakovleva, Hiromi H. Yamamoto, Kiyoshi Yamazato

Marine & Environmental Sciences Faculty Articles

Sesoko Station, Okinawa, has been the site of many significant advances in coral reproductive research and it continues to be a preferred destination for both Japanese and international researchers. Consequently, there are decades of spawning observations, which we present and explore here with the aim of making it easier to predict when species spawn at Sesoko Station. The data include over 700 spawning observations from 87 species of reef-building hermatypic corals. Almost all spawning occurred between dusk and dawn, with most spawning activity concentrated in the 2 to 4 hours after sunset. Some phylogenetic patterns were evident: most Acropora species …

Selection Shapes The Landscape Of Functional Variation In Wild House Mice., Raman Akinyanju Lawal, Uma P Arora, Beth L Dumont

Faculty Research 2021

BACKGROUND: Through human-aided dispersal over the last ~ 10,000 years, house mice (Mus musculus) have recently colonized diverse habitats across the globe, promoting the emergence of new traits that confer adaptive advantages in distinct environments. Despite their status as the premier mammalian model system, the impact of this demographic and selective history on the global patterning of disease-relevant trait variation in wild mouse populations is poorly understood.

RESULTS: Here, we leveraged 154 whole-genome sequences from diverse wild house mouse populations to survey the geographic organization of functional variation and systematically identify signals of positive selection. We show that a significant …

The First Record Of The Jumping Bristletail Pedetontus Gershneri Allen, 1995 (Microcoryphia: Machilidae) From Alabama, Usa Significantly Extends Its Known Range, Alexander B. Orfinger, Grant D. De Jong

Insecta Mundi

The jumping bristletail Pedetontus gershneri Allen, 1995 (Microcoryphia: Machilidae) is reported from the state of Alabama, USA, for the first time, extending its known range east-southeast by roughly 588 km. The first partial mtDNA barcode was generated for the species. Notes on color variation and sampling needs of Microcoryphia are briefly discussed.

The Microcoryphia (=Archaeognatha, or jumping bristletails) are a small order of insects with about 500 nominal species worldwide (Mendes 1990). The North American fauna includes 30 named species (De Jong 2020), with additional species expected to be discovered and described (Bowser 2019). Numerous records of species in the …

Survey Of The Attelabidae Of Wisconsin (Coleoptera: Curculionoidea), Julia Janicki, Daniel K. Young

Insecta Mundi

A statewide survey of Wisconsin’s Attelabidae (Coleoptera: Curculionoidea) was conducted over one full (2012) and two partial (2011, 2013) field seasons. Specimens were collected using a variety of techniques. Fourteen species of Attelabidae in nine genera placed in two subfamilies are now recorded from Wisconsin, with five new state species records and 117 new Wisconsin county records. Generic and species-level keys for Wisconsin attelabid species are provided along with generic and species diagnoses. Species treatments also include a synonymy, a description, and information on natural history, phenology, distribution and collecting methods. Dorsal and lateral habitus images are also provided for …

A New Neotropical Predaceous Midge In The Genus Parabezzia Malloch From Guerrero, Mexico, And A Second Mexican Record Of P. Alexanderi Wirth (Diptera: Ceratopogonidae: Ceratopogoninae: Ceratopogonini), Herón Huerta, Gustavo R. Spinelli, William L. Grogan Jr.

Insecta Mundi

We describe and illustrate a new Neotropical predaceous midge, Parabezzia carlae Huerta, Spinelli and Grogan, new species (Diptera: Ceratopogonidae) from males collected by Malaise trap in La Union, Ayutla de los Libres, state of Guerrero, Mexico. We also report a second record of P. alexanderi Wirth from Veracruz, Mexico. A key to the known species in Mexico is included.

Se describe e ilustra una especie nueva de mosquita predadora de la región Neotropical, Parabezzia carlae Huerta, Spinelli y Grogan, nueva especie (Diptera: Ceratopogonidae) sobre la base de machos colectados con trampa Malaise procedentes de La Unión, Ayutla de Los Libres, …

A New Species Of Leptorhyparus Howden, 2003 (Coleoptera: Scarabaeidae: Aphodiinae: Rhyparini) In Amber From The Dominican Republic, With Comments On Extant Species, Paul E. Skelley

Insecta Mundi

A new species of Leptorhyparus Howden, 2003 (Coleoptera: Scarabaeidae: Aphodiinae: Rhyparini) is described, Leptorhyparus quadricornis Skelley, in amber from the Dominican Republic. Extant species of Leptorhyparus are reviewed, with additional collection data and diagnostic characters presented.

Se describe una nueva especie en el género Leptorhyparus Howden, 2003 (Coleoptera: Scarabaeidae: Aphodiinae: Rhyparini), Leptorhyparus quadricornis Skelley, en ámbar de la República Dominicana. Se revisan las especies vivientes del género Leptorhyparus, agregándose datos de colección y caracteres diagnósticos.

Claudicating Patients With Peripheral Artery Disease Have Meaningful Improvement In Walking Speed After Supervised Exercise Therapy, Hafizur Rahman, Iraklis Pipinos, Jason M. Johanning, George P. Casale, Mark A. Williams, Jonathan R. Thompson, Yohanis O'Neill-Casto, Sara A. Myers

Journal Articles

Objective

Supervised exercise therapy (SET) is a first-line treatment for patients with peripheral artery disease (PAD). The efficacy of SET is most commonly expressed by significant statistical improvement of parameters that do not clarify how each individual patient will benefit from SET. This study examined the minimal clinically important difference (MCID) in walking speed in claudicating patients with PAD after SET.

Methods

A total of 63 patients with PAD-related claudication (Fontaine stage II PAD) participated in a 6-month SET program. Self-selected walking speed was measured before and after SET. Distribution and anchor-based approaches were used to estimate the MCID for …

Insects And Their Laboulbeniales (Ascomycota, Fungi) Of Lake Eustis And Emeralda Marsh Conservation Area: A Case Study On Urbanization And Diversity, Patricia J. Kaishian

Purdue University Libraries Open Access Publishing Fund

A rapid biodiversity assessment of insects and associated Laboulbeniales fungi was conducted over the course of five nights in August, 2018, at two central Florida lakes: Lake Eustis and the nearby protected and restored National Natural Landmark, Emeralda Marsh Conservation Area (EMCA), which encompasses a portion of Lake Griffin. Lake Eustis was surveyed for Laboulbeniales in 1897 by mycologist Dr. Roland Thaxter but has not since been investigated. Because Lake Eustis has been urbanized, with the lake perimeter almost entirely altered by human development, the site offers a look into Laboulbeniales diversity across a 121-year timeline, before and after human …

Classifying Mosquito Presence And Genera Using Median And Interquartile Values From 26-Filter Wingbeat Acoustic Properties, Hernan S. Alar, Proceso L. Fernandez Jr

Department of Information Systems & Computer Science Faculty Publications

Mosquitoes are known to be one of the deadliest creatures in the world. There have been several studies that aim to identify mosquito presence and species using various techniques. The most common ones involve automatic identification of mosquito species from the sounds produced by flapping its wings. The development of these important concepts and technologies can help reduce the spread of mosquito-borne diseases. This paper presents a simple model based on mean and interquartile values that aim to solve the mosquito classification. Despite its simplicity, the proposed model significantly outperforms a Convolutional Neural Network (CNN) model in identifying the mosquito …

Stabilin Receptors Clear Lps And Control Systemic Inflammation, Fatima Cabral, Mustafa Al-Rahem, John Skaggs, Thushara A. Thomas, Naresh Kumar, Qian Wu, Paolo Fadda, Lianbo Yu, John M. Robinson, Jonghan Kim, Ekta Pandey, Xinghui Sun, Wael N. Jarjour, Murugesan V.S. Rajaram, Edward N. Harris, Latha P. Ganesan

Department of Biochemistry: Faculty Publications

Lipopolysaccharides (LPSs) cause lethal endotoxemia if not rapidly cleared from blood circulation. Liver sinusoidal endothelial cells (LSEC) systemically clear LPS by unknown mechanisms. We discovered that LPS clearance through LSEC involves endocytosis and lysosomal inactivation via Stabilin-1 and 2 (Stab1 and Stab2) but does not involve TLR4. Cytokine production was inversely related to clearance/endocytosis of LPS by LSEC. When exposed to LPS, Stabilin double knockout mice (Stab DK) and Stab1 KO, but not Stab2 KO, showed significantly enhanced systemic inflammatory cytokine production and early death compared with WT mice. Stab1 KO is not significantly different from Stab DK in circulatory …

Endophytic Colonisation Of Solanum Lycopersicum And Phaseolus Vulgaris By Fungal Endophytes Promotes Seedlings Growth And Hampers The Reproductive Traits, Development, And Survival Of The Greenhouse Whitefly, Trialeurodes Vaporariorum, Vongai M. Paradza, Fathiya M. Khamis, Abdullahi A. Yusuf, Sevgan Subramanian, Sunday Ekesi, Komivi S. Akutse

All Peer-Reviewed Publications

In the scope of mitigating the negative impacts of pesticide use and managing greenhouse whiteflies, Trialeurodes vaporariorum sustainably, 16 endophytic fungal isolates from five different genera (Beauveria, Trichoderma, Hypocrea, Bionectria, and Fusarium) were screened for their ability to colonise two preferred host plant species, namely, tomato (Solanum lycopersicum L.) and French bean (Phaseolus vulgaris L.), through seed inoculation. Seven and nine isolates were endophytic to P. vulgaris and S. lycopersicum, respectively, where significant differences in the endophytic colonisation rates were observed among the fungal isolates in P. vulgaris and its plant parts, with a significant interaction between the isolates and …

Two New Species Of Nothochodaeus Nikolajev, 2005 From Palawan Island, Philippines (Coleoptera: Scarabaeoidea: Ochodaeidae), Jean-Bernard Huchet

Insecta Mundi

Nothochodaeus minotaurus Huchet, new species, and N. huxleyi Huchet, new species (Coleoptera: Scarabaeoidea: Ochodaeidae), from Palawan Island, Philippines, are described and illustrated.

Following my study of the Ochodaeidae of the Philippine archipelago (Huchet 2014a, 2014b, 2017, 2018, 2019), I describe here two new species of the genus Nothochodaeus Nikolajev, respectively N. minotaurus Huchet, new species, and N. huxleyi Huchet, new species, bringing to four species, all endemic, the representatives of this genus in the archipelago. Both species described here are illustrated and compared with their closest relatives. These new species originate from the island of Palawan. This discovery …

A Resource For Understanding And Evaluating Outcomes Of Undergraduate Field Experiences, Erin E. Shortlidge, Alison Jolley, Stephanie Shaulskiy, Emily Geraghty Ward, Christopher N. Lorentz, Kari O'Connell

Biology Faculty Publications and Presentations

Undergraduate field experiences (UFEs) are a prominent element of science education across many disciplines; however, empirical data regarding the outcomes are often limited. UFEs are unique in that they typically take place in a field setting, are often interdisciplinary, and include diverse students. UFEs range from courses, to field trips, to residential research experiences, and thereby have the potential to yield a plethora of outcomes for undergraduate participants. The UFE community has expressed interest in better understanding how to assess the outcomes of UFEs. In response, we developed a guide for practitioners to use when assessing their UFE that promotes …

Phylogenetic Grouping By Pcr Analyses Of Sinorhizobium Meliloti Strains Isolated From Eutrophic Soil, W. S. Oliveira, P. P. A. Oliveira, C. M. Bellato, F. R. S. Duarte, S. M. Tsai

IGC Proceedings (1977-2023)

This study evaluated the ability of Sinorhizobium meliloti strains (SEMIA-116, SEMIA- 134 and SEMIA-135) to persist in eutrophic soils after three complete growing cycles of alfalfa. PCR fingerprinting using primers for the nifH, Eric, Rep, RP genes and P25 RAPD-PCR performed the phylogenetic grouping of the three commercial strains and 39 field isolates. These analyzes were sufficiently sensitive to discriminate and group the strains and isolate. Our preliminary studies were based upon Eric primers and RP01 RAPD-PCR.

Achievements And Perspectives In The Breeding Of Temperate Grasses And Legumes, Kenneth H. Quesenberry, M. D. Casler

IGC Proceedings (1977-2023)

This paper will focus on a historical perspective on cool season forage production, plant breeding methods for cool season forages, major cool season forage selection criteria, some examples of significant achievements, and a future perspective. Topics similar to ours have been discussed at recent previous meeting of this Congress (Humphreys, 1997; Van Wijk et al., 1993); however, we will strive to avoid “plowing the same ground twice”. In an attempt to prevent duplication of content with other sections of this Congress, only limited attention will be given to genetic resource acquisition and conservation. Additionally, alfalfa (Medicago sativa L.), one …

Achievements And Perspectives In The Breeding Of Tropical Grasses And Legumes, John W. Miles

IGC Proceedings (1977-2023)

Pasture and forage plant breeding is complicated by the perennial nature of the plants, the diversity of environments in which improved cultivars will be used, and the complex criteria of merit involved, criteria that necessarily include some measure of impact on the efficiency of animal production. While pasture plant breeding in the temperate zone is a demonstrably productive activity, the record of success for the tropical species -- "success" measured by release and adoption of bred cultivars -- is less convincing, in spite of four decades of activity in numerous public sector breeding programs and a large published literature. The …

Tropical Forage Genetic Resources -- Will Any Be Left For Future Generations?, B. L. Maass, B. C. Pengelly

IGC Proceedings (1977-2023)

After very active years of pasture and forage research at major institutes, interest in tropical forage genetic resources has drastically declined. Apparently, the early phases of collecting and evaluation were much more valued than conserving and keeping the germplasm available for future generations. Accumulated data are not easily accessible and, therefore, the knowledge of tropical forage genetic resources is progressively being lost. This worldwide decrease in activity and loss of knowledge is due to declining resources. It is suggested that a global database on tropical forage genetic resources should be established and also that finances be made available to at …

Competition Of 35 Cultivars Of Alfalfa At Sertãozinho-Sp, Ana C. Ruggieri, A. Schmidek, A. R. P. Almeida, L. A. Figueiredo, Alda L. G. Monteiro, M. F. L. Muñoz

IGC Proceedings (1977-2023)

Thirty-five cultivars of alfalfa were evaluated at EE de Zootecnia in Sertãozinho,SP, Brazil. During four years, the plants were harvested to determine dry matter yield on total and individual cuts. A completely randomized block design with three replications was used, and data were analyzed by groups of origin and dormancy degree. There were significant differences (P< 0.05) among the cultivars regarding their dormancy degree, however no differences (P> 0.05) were observed regarding their origin. Cultivars with 8 and 9 dormancy degree showed better performance during the four year trial when compared to 7 degree, although some of the 9 degree cultivars resulted in low yield. The origin of cultivars did not influence …

Adaptability And Stability Of Alfalfa Cultivars, Ana C. Ruggieri, Alda L. G. Monteiro, R. Gualberto

IGC Proceedings (1977-2023)

Yield adaptability and stability of thirty five alfalfa genotypes (Medicago sativa L.) were evaluated at Sertãozinho, SP, Brazil, considering different environments (seasons of year) from 1996 to 1999. A randomized complete block design with three replications was used. Scott-Knott’s test was performed to compare genotypes averages. Adaptability and stability were determined by Eberhart and Russell's procedures. Two diverse groups of genotypes with mean dry matter yield were identified: Araucana, F686, MH4 e BR2 were more responsive under favorable environments, but SW 8210, Alto, Monarca SP, Victoria SP, Florida 77, P5888, MH15, BR1, BR3, SW 9210A presented broad adaptability and …

One Step At A Time: Robotics Lab Team Combines Talents In Quest For The Perfect Synthetic Tendon, Laura Meader

Colby Magazine

When Caitrin Eaton arrived at Colby a year ago, she named her new robotics lab C3PO. The name grabs students’ attention, but they’re drawn to the lab for another reason: Eaton’s cutting-edge research unites engineering and animal physiology to help robots walk more smoothly than Hollywood’s stiff-legged C-3PO robot.

Earthworm And Soil Data For Ottawa National Forest, Blair Orr

Michigan Tech Research Data

Two types of analysis were run.

I. Probability of finding L. terrestris in habitat types of the Ottawa National Forests.

Abstract: Parts of the Ottawa National Forest (ONF) provide suitable habitat for invasive earthworms. Extensive earthworm invasion is a relatively recent event on the ONF and this study captures the current state of the earthworm invasion through a four-stage invasive species distribution model (iSDM). The random distribution of earthworms indicates early colonization by earthworms which is moderated by habitat (forest type, soil group, and drainage class). CART modeling was used to determine probability of earthworm invasion. The CART model had …

(Non)Parallel Developmental Mechanisms In Vertebrate Appendage Reduction And Loss, Samantha Swank, Thomas Sanger, Yoel E. Stuart

Biology: Faculty Publications and Other Works

Appendages have been reduced or lost hundreds of times during vertebrate evolution. This phenotypic convergence may be underlain by shared or different molecular mechanisms in distantly related vertebrate clades. To investigate, we reviewed the developmental and evolutionary literature of appendage reduction and loss in more than a dozen vertebrate genera from fish to mammals. We found that appendage reduction and loss was nearly always driven by modified gene expression as opposed to changes in coding sequences. Moreover, expression of the same genes was repeatedly modified across vertebrate taxa. However, the specific mechanisms by which expression was modified were rarely shared. …

Race And Drug Toxicity: A Study Of Three Cardiovascular Drugs With Strong Pharmacogenetic Recommendations., Travis J. O'Brien, Kevin Fenton, Alfateh Sidahmed, April Barbour, Arthur F Harralson

Pharmacology and Physiology Faculty Publications

No abstract provided.