Life Sciences Commons^™

Shell Calcification And Growth Of The Aquatic Snail Planorbella Trivolvis Under Low Calcium Conditions Typical Of Decalcified Northern Lakes, Shawn A. Witte

Biology Theses

The water calcium concentration of northern softwater lakes has declined to critically low levels due to numerous anthropogenic stressors, and the availability of calcium is expected to decline further. To assess the impact that critically low water calcium has on aquatic snail shell calcification and growth, juvenile Planorbella trivolvis were raised for 60 days in one of four treatments, each containing a different amount of dissolved calcium (0.64, 1.3, 2.5, and 5.1 mg/L). There was no difference in tissue weight or shell size among treatments, suggesting low water calcium concentrations do not impact adult body mass or size. However, snails …

Livestock Grazing Impacts On Crop And Soil Responses For Two Cropping Systems, Alyssa Kuhn

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Diversified crop, forage, and livestock systems are assumed to be more sustainable and economically competitive than traditional cropping systems. Objectives of this study were to determine effects of integrating grazing livestock into corn (Zea mays)-soybean (Glycine max (L.) Merr.) (C-S) and corn-soybean-wheat (Triticum aestivum L.) (C-S-W) cropping systems on plant population, grain yield, soil nutrients and soil carbon dioxide (CO₂) flux following winter grazing corn residue (both systems) and an oat (Avena sativa) cover crop (C-S-W only) planted after wheat. For the 2019 and 2020 production seasons, neither corn nor soybean plant …

Edible Insect Farming As An Emerging And Profitable Enterprise In East Africa, Chrysantus M. Tanga, James P. Egonyu, Dennis Beesigamukama, Saliou Niassy, Kimathi Emily, Henlay Jo Magara, Evanson R. Omuse, Sevgan Subramanian, Sunday Ekesi

All Peer-Reviewed Publications

In East Africa, insect farming is a rapidly growing business providing access to ‘climate-smart’ protein, other nutrients, and income. With the continental drive to transform existing food systems that are becoming continuously unsustainable due to scarcity of arable land and water, and high ecological imprint, insect farming for food and feed with circular economy potential has gained remarkable interest. In this review, we report on the recent research trends on key substrates and insect species commonly farmed, map of commercial enterprises, insect nutritional values, processing techniques, marketing, regulatory framework, and lessons learnt on insect farming. These findings provide important answers …

Insect Flower-Visitors Of African Oil Palm Elaeis Guineensis At Different Sites And Distances From Natural Vegetation In Uganda, James Peter Egonyu, Stephen Erisa Sisye, John Baguma, Milton Otema, Gabriel Ddamulira

All Peer-Reviewed Publications

This survey aimed at generating information to guide improvement of oil palm fruit-set in Uganda by testing the hypothesis that diversity and abundance of oil palm insect flower-visitors were influenced by sampling site, distance from natural vegetation and flower sex. Sampling was done on male and female oil palm flowers from (i) five oil palm experimental fields in different districts and (ii) oil palm plantations on Bugala Island on Lake Victoria. The plantations on Bugala Island were subdivided into near (0–15 m) and far (100–200 m) from natural vegetation. We recorded 162,677 insects in 23 morpho-species, dominated by weevils in …

Open System Metabolism Of The Grand River From Headwaters To Mouth, Colin J. Assenmacher

Honors Projects

The Grand River is the longest river in Michigan and has been greatly impacted by human activities, particularly logging in the mid-1800s, which when coupled with 20th-century urbanization and continued agricultural use, led to historically poor river health. Despite this, actions throughout the past 50 years by federal, state, and local citizen involvement, have resulted in increased river health and broader water quality monitoring within the watershed. During the summer of 2021, rapid bioassessments targeting benthic macroinvertebrates were conducted along the Grand River, with the primary goal of following up on prior state-led surveys conducted at different locations along the …

An Analysis Of Environmental Conditions Impacting Cyanobacterial Algal Blooms In Drinking Water Sources In Upstate South Carolina, Gregory Langlois

All Theses

Maintaining water quality in reservoirs used for drinking water has been an issue in recent years due to the presence of algal blooms. Algal blooms are a perennially recurring problem that can have negative impacts on tourism, recreation, and overall water quality. Additionally, algal blooms will often produce an assortment of chemicals, some of which are hazardous to the health of humans, and some of which that, while relatively innocuous, result in unpleasant tastes and odors in water. Geosmin and 2-methylisoborneol are two taste and odor compounds that are notoriously difficult to treat out of drinking water sources by traditional …

Glycan Functionalization Of Iron Oxide Nanoparticles (Ionps) As A Method Of Inactivating Antibiotic Resistant Neisseria Gonorrhoeae Via A Magnetically Mediated Energy Delivery (Magmed) System, Cedric Taylor

All Theses

With the increase of antibiotic resistant bacteria, current established therapeutic treatment methods are rapidly demonstrating decreasing efficacy. For this project, we are studying a novel alternate mechanism of treating antibiotic resistant bacteria by utilizing magnetic iron oxide nanoparticles (IONPs) coated with a heterobifunctional polyethylene glycol polymer (PEG) and functionalized with glycan structures that can interact with Neisseria gonorrhoeae FA1090. Interaction between the IONPs and bacteria is manipulated by an external alternating magnetic field (AMF) in a process known as magnetically mediated energy delivery (MagMED). Magnetic IONPs were synthesized and reacted with PEG (PEG-IONPs) and functionalized with glycans Gal(α1-3)Gal(β1-4)Glc(β1-1) (common name: …

Effects Of Cashew Nut Shell Extract On Nutrient Digestibility And Ruminal Fermentation Under In Vitro Batch Culture And Continuous Culture Conditions, Chandler Compton

All Theses

The overall objective of this research was to determine the effects of cashew nut shell extract (CNSE; 59% anacardic acid and 18% cardol) on nutrient digestibility and rumen fermentation profile under in vitro batch culture (Chapter 2) and continuous culture conditions (Chapter 3). The second objective was to determine an optimal supplementation dosage for dairy cows. The batch culture study was organized as a randomized complete block design with 15 replicates per treatment incubated for 24 h during four incubation runs. Each incubation was inoculated with rumen contents collected from ruminally fistulated cows fed either a close-up ( …

Sources Of Peanut Digging Losses And Strategies To Reduce Losses During Inversion, Loren Samenko

All Theses

Presented research was conducted at Clemson University’s Edisto Research and Education Center to quantify harvest related losses associated with the effects of peanut digger blade geometry, the effects of the peanut digger inversion assembly, and the effects of vine load on digging and strategies to address vine load. Three studies were performed to determine the potential losses incurred during the digging processes; various harvest metrics were analyzed to quantify the effects of the treatments. Five objectives guided the presented research. Objectives of the effects of peanut digger blade geometry study investigated the impact of blade geometry and blade aggression on …

Utility Of Anaerobic Soil Disinfestation For Weed And Disease Management In Solanaceous Vegetable Crops, Gursewak Singh

All Theses

Managing weeds is one of the most challenging aspects of growing specialty crops. Weed control options are limited for specialty crops due to absence of effective herbicide options. The limited current herbicide options risk carryover and damage to subsequent crops. Bacterial wilt is another problem causing significant yield losses in southeast vegetable production. After the termination of methyl bromide due to health and environmental concerns, several other chemical fumigants gained interest, including 1,3-dichloropropene, chloropicrin and metam sodium/potassium. While less toxic to the environment than methyl bromide, these fumigants pose carcinogenic and mutagenic threats. Alternative weed control and diseases management tactics …

Fine Mapping Of Chilling Requirement And Bloom Date To Enable Marker-Assisted Breeding Of Climate Resilient Peach, Gizem Demirel

All Theses

Peach (Prunus persica (L.) Batsch) fruit is a delicious summer treat appreciated for its sweet, juicy, and aromatic taste all over the globe. With only 44 calories and zero fat per fruit, peach has a great popularity among consumers and producers for its nutritional and economic value. Peach production is threatened by unpredictable climate changes, rising temperatures that reduce winter chill, especially in the warmer growing areas, resulting in fruit and yield loss. Therefore, it is necessary to develop cultivars that are resilient to environmental changes. Peach breeding takes a long time, and this process can benefit from the …

Expanding The Conservation Genomics Toolbox: Incorporating Structural Variants To Enhance Genomic Studies For Species Of Conservation Concern, Stephanie J. Galla

Biology Faculty Publications and Presentations

Structural variants (SVs) are large rearrangements (>50 bp) within the genome that impact gene function and the content and structure of chromosomes. As a result, SVs are a significant source of functional genomic variation, that is, variation at genomic regions underpinning phenotype differences, that can have large effects on individual and population fitness. While there are increasing opportunities to investigate functional genomic variation in threatened species via single nucleotide polymorphism (SNP) data sets, SVs remain understudied despite their potential influence on fitness traits of conservation interest. In this future-focused Opinion, we contend that characterizing SVs offers the conservation genomics …

Local Canopy Disturbance As An Explanation For Long-Term Increases In Liana Abundance, Stefan A. Schnitzer, David M. Defilippis, Marco Visser, Sergio Estrada-Villegas, Rigoberto Rivera-Camaña, Boris Bernal, Salomé Peréz, Abelino Valdéz, Seberino Valdéz, Antonio Aguilar, James W. Dalling, Eben N. Broadbent, Angelica M. Almeyda Zambrano, Stephen P. Hubbell, Maria Garcia-Leon

Biological Sciences Faculty Research and Publications

Canopy disturbance explains liana abundance and distribution within tropical forests and thus may also explain the widespread pattern of increasing liana abundance; however, this hypothesis remains untested. We used a 10-year study (2007–2017) of 117,100 rooted lianas in an old-growth Panamanian forest to test whether local canopy disturbance explains increasing liana abundance. We found that liana density increased 29.2% and basal area 12.5%. The vast majority of these increases were associated with clonal stem proliferation following canopy disturbance, particularly in liana-dense, low-canopy gaps, which had far greater liana increases than did undisturbed forest. Lianas may be ecological niche constructors, arresting …

Integrated Weed Management Strategies For Palmer Amaranth (Amaranthus Palmeri) In Cotton And Soybean Production Systems, Rodger Bruce Farr

Graduate Theses and Dissertations

Management of Palmer amaranth [Amaranthus palmeri (S.) Wats.] in the Midsouth in soybean [Glycine max (L.)] and cotton (Gossypium hirsutum L.) production systems has become increasingly troublesome due to resistance to many of the commonly utilized herbicides in these systems. Developments have been made to utilize new chemistries as well as incorporate integrated weed management strategies to control Palmer amaranth, but questions have risen given the economic feasibility or effectiveness of these new strategies. Additionally, regulation has limited producers’ abilities to utilize some herbicide chemistries. As a result, experiments were conducted to 1) understand the utility of isoxaflutole in isoxaflutole-tolerant …

Efficacy Of Spirulina (Arthrospira Platensis) Utilization In Broiler Diets, Garrett James Mullenix

Graduate Theses and Dissertations

Spirulina (Arthrospira platensis) is a cyanobacteria microalgae that has potential as an animal feed ingredient. Five experiments were conducted to further assess its ability to serve as a protein source in broiler diets. Experiment 1 consisted of an amino acid digestibility and apparent metabolizable energy assay. The results indicated that the standardized ileal amino acid levels of spirulina are comparable with typical soybean meal. Experiment 2 assessed the performance and processing parameters of broilers fed 10% spirulina in low crude protein diets, using published digestibility coefficients. Spirulina inclusion improved footpad quality and increased redness and yellowness of the breast, skin …

Engineering Fluorescently Labeled Human Fibroblast Growth Factor One Mutants And Characterizing Their Photophysics Properties Towards Designing Fret Assays, Mamello Mohale

Graduate Theses and Dissertations

Human fibroblast growth factor one (hFGF1) belongs to a family of 22 FGF members produced by fibroblast cells. Cell signaling during physiological processes of angiogenesis and wound healing occurs when hFGF1 binds to its receptor (FGFR). However, when heterogenous homeostasis is not maintained, fibroblast cells exhibit excessive proliferation which can lead to a myriad of cancers. smFRET is an ultrasensitive distant dependent (1-10 nm) technique capable of resolving such heterogeneity in structural dynamics and binding affinities (Kd). Therefore, we successfully designed and characterized fluorescently labeled hFGF1 tracers which span the visible light region of the electromagnetic spectrum for use in …

Evaluation Of Nitrous Oxide Emissions From Furrow-Irrigated Rice On A Silt-Loam Soil In Arkansas, Jordan M. Slayden

Graduate Theses and Dissertations

As the number one rice (Oryza sativa)-producing state in the United States, Arkansas also ranks fourth as the largest user of groundwater. Recently, due to the development of drought- resistant hybrid cultivars, the furrow-irrigated rice production system has become an increasingly popular alternative to traditional flood-irrigated production with respect to conserving groundwater and maintaining yield. However, other environmental parameters, like greenhouse gas emissions, specifically nitrous oxide (N2O), have yet to be evaluated under furrow-irrigated rice. The objectives of this study were to i) evaluate the effects of site position (i.e., up-, mid-, and down-slope) and tillage treatment [i.e., conventional tillage …

Recreational Fishing For Western Rock Lobster: Estimates Of Participation, Effort And Catch From 2018/19–2020/21. Fisheries Research Report 313, Claire B. Smallwood, Karina L. Ryan, Alissa Tate, Cameron J. Desfosses

Fisheries Research Reports

The Western Rock Lobster (WRL) (Panulirus cygnus) is one of the four Rock Lobster (RL) species found in Western Australia. It was the first fishery in the world to obtain Marine Stewardship Council Certification and the first in Western Australia to be managed under a resource allocation process. Catches from the commercial and recreational sectors are required to determine and monitor Total Allowable Catch (TAC), Total Allowable Recreational Catch (TARC) and proportion of Allowable Harvest Level (AHL) achieved. The TARC is set at 5% of the AHL and evaluated in the harvest strategy based on a 5-year average. Since 2018/19, …

Shore-Based Recreational Fishing In The Perth Metropolitan Area: 2014 – 2021. Fisheries Research Report 315, Alissa Tate, Claire B. Smallwood

Fisheries Research Reports

Recreational fishing is a popular activity in Western Australia, occurring throughout the state from private and charter boats, and from a variety of natural and man-made structures along the shore. Ongoing monitoring of the shore-based recreational fishery is essential to assist with monitoring, management evaluation and stock assessments for nearshore species. Especially for species such as Australian Herring and Southern Garfish who were the focus of recent management changes in 2015 (reduction of bag limit from 30 to 12) and 2017 (closure of Perth Metropolitan waters), respectively. An on-site roving creel survey to collect effort and catch data from shore …

Insights Into The Role And Regulation Of The Mitochondrial Unfolded Protein Response During Pathogen Infection, Mohammed Adnan Qureshi

Biology Dissertations - Archive

Mitochondria are essential cellular organelles known for their role in energy production, apoptosis, aging, calcium signaling and others. Due to their essential nature, mitochondria are often under attack by numerous pathogens as a means to promote their infection. Consequently, mitochondrial function is often perturbed during infection, a phenomenon that must be mitigated in order for the host to survive. Cells employ various tactics to repair damaged mitochondria during stresses such as pathogenic infection. One way of countering mitochondrial stress is through the recovery mechanism known as the mitochondrial unfolded protein response (UPRmt). The UPRmt supports mitochondrial recovery by promoting mitochondrial …

A Method For Identifying Ancient Introgression Between Caballine And Non-Caballine Equids Using Whole Genome High Throughput Data., Kalpani De Silva

Electronic Theses and Dissertations

Introgression is one of the main mechanisms that transfer adapted alleles between species. The advantageous variants will get positively selected and retained in the recipient population while rest of the variants undergo negative selection. When analyzing horse genome, two alleles were found in CXCL16 gene, one associated with susceptibility and one with resistance to developing persistent shedding of the Equine Arteritis Virus. The two alleles differ by 4 non-synonymous variants in exon 1 of the gene. Comparison with 3 non-caballine equids (zebras, asses and hemiones) revealed that one haplotype was almost identical to the haplotype found in non-caballines while the …

Impacts Of Environmental And Anthropogenic Stressors On Amphibian Welfare, Diversity, And Distribution In The Upper Missouri River Basin, Kaitlyn Campbell

Dissertations and Theses

Climate change and anthropogenic stressors have contributed to rapid declines among various taxonomic groups; however, amphibian declines have been particularly intense and primarily stemmed from warming temperatures, habitat loss, exposure to contaminants, disease, and their subsequent interactions. Several climate mitigation strategies, like Bioenergy with Carbon Capture and Storage, have been proposed to alleviate the impact of rising temperatures; however, these proposals often fail to recognize and quantify the true impact on fauna, including changes in species distributions. To address this critical gap in knowledge, this research identified current amphibian distributions in the Upper Missouri River Basin and projected distribution changes …

Coevolutionary Methods Enable Robust Design Of Modular Repressors By Reestablishing Intra-Protein Interactions, Xian-Li Jiang, Rey P. Dimas, Clement T.Y. Chan, Faruck Morcos

Biology Faculty Publications and Presentations

enetic sensors with unique combinations of DNA recognition and allosteric response can be created by hybridizing DNA-binding modules (DBMs) and ligand-binding modules (LBMs) from distinct transcriptional repressors. This module swapping approach is limited by incompatibility between DBMs and LBMs from different proteins, due to the loss of critical module-module interactions after hybridization. We determine a design strategy for restoring key interactions between DBMs and LBMs by using a computational model informed by coevolutionary traits in the LacI family. This model predicts the influence of proposed mutations on protein structure and function, quantifying the feasibility of each mutation for rescuing hybrid …

Characterization Of The Multifunctional Enzyme Proline Utilization A, Yizi Mao

Department of Biochemistry: Dissertations, Theses, and Student Research

Proline is a unique and important amino acid. Proline is a proteogenic amino acid and its metabolism is involved in many critical cellular functions. Therefore, proline metabolism is tightly regulated, and dysfunction of proline metabolism is related to human diseases. The first step of proline oxidization to ∆¹-pyrroline-5-carboxylic acid (P5C) is catalyzed by proline dehydrogenase (PRODH). P5C is then non-enzymatically hydrolyzed to glutamate-γ-semialdehyde (GSA), which can be further oxidized to glutamate by P5C dehydrogenase (P5CDH/GSALDH). In Gram-negative bacteria, the PRODH and P5CDH enzymes are expressed as one polypeptide called proline utilization A (PutA). In some Gram-negative bacteria an …

The Impact Of Beneficial Organisms In Corn Agroecosystems, Callie Rosalind Braley

Doctor of Plant Health Program: Dissertations and Student Research

Corn is one of the world’s, and Nebraska’s, most important crops. Millions of acres are planted to corn each year in the Cornhusker State. However, each year there are a plethora of arthropod, weed, and microorganism pests that rob farmers of reaching their maximum yield potential. There are many options available to manage these pests in corn agroecosystems, but one option is often underutilized: beneficial organisms. For each pest, there are a variety of natural enemies that can assist in mitigating the damage caused by pests.

Many beneficial organisms exist, and they can be grouped by the type of pest …

Intricacies In Agronomic Management: The Role Of Interdisciplinary Education, Adam M. Striegel

Doctor of Plant Health Program: Dissertations and Student Research

As a science, agronomy is built upon the connection of inter-disciplinary fields of study. Management (M) of various discipline considerations (and their subsequent interactions) can be influenced by and have significant effects on genetic by environment (GxE) expression. This has led to the promotion of GxExM systems. However, optimizing GxExM programs requires extensive, interdisciplinary knowledge. To evaluate interdisciplinary training provided in undergraduate education, 11 four-year universities were selected in the United States that offer baccalaureate degree majors in agronomy or crop science. Surveys of undergraduate programs of study were conducted, with all required coursework separated into general degree components (general …

Examination Of Cajeput Oil (Melaleuca Cajuputi) Phytochemicals As Tools To Manage The Yellow Fever Mosquito (Aedes Aegypti L.), Ellis Johnson

Department of Entomology: Dissertations, Theses, and Student Research

The yellow fever mosquito, Aedes aegypti L., is among the most important insects as it pertains to public health. It vectors several health-endangering pathogens, including yellow fever, dengue fever, chikungunya, and Zika viruses. Insecticides are among the most effective tools used to manage mosquito populations however, their efficacy to manage mosquito populations is being threatened by insecticide resistance. This ongoing threat warrants new chemical strategies to reduce or incapacitate a mosquito population capable of pathogen transmission. Plant essential oils are candidates for identifying novel management tools for disease-vectoring arthropods. Commercially, essential oils have been used for pharmaceuticals, flavoring, fragrances, cosmetics, …

Comparing Machine Learning Techniques With State-Of-The-Art Parametric Prediction Models For Predicting Soybean Traits, Susweta Ray

Department of Statistics: Dissertations, Theses, and Student Research

Soybean is a significant source of protein and oil, and also widely used as animal feed. Thus, developing lines that are superior in terms of yield, protein and oil content is important to feed the ever-growing population. As opposed to the high-cost phenotyping, genotyping is both cost and time efficient for breeders while evaluating new lines in different environments (location-year combinations) can be costly. Several Genomic prediction (GP) methods have been developed to use the marker and environment data effectively to predict the yield or other relevant phenotypic traits of crops. Our study compares a conventional GP method (GBLUP), a …

Insight Into The Evolution Of Anuran Foot Flag Displays: A Comparative Study Of Color And Kinematics, Nigel K. Anderson, K. V. Gururaja, Lisa A. Mangiamele, Erin C. Netoskie, Sarah Smith, Matthew J. Fuxjager, Doris Preininger

Biological Sciences: Faculty Publications

Understanding how complex animal displays evolve is a major goal of evolutionary organismal biology. Here, we study this topic by comparing convergently evolved gestural displays in two unrelated species of frog (Bornean Rock Frog, Staurois parvus, and Kottigehara Dancing Frog, Micrixalus kottigeharensis). This behavior, known as a foot flag, is produced when a male ?waves' his hindlimb at another male during bouts of competition for access to mates. We assess patterns of variation in the color of frog feet and the kinematics of the display itself to help pinpoint similarities and differences of the visual signal elements. We find clear …

Large-Scale Genome Sampling Reveals Unique Immunity And Metabolic Adaptations In Bats, Diana D. Moreno Santillán, Tanya M. Lama, Yocelyn T. Gutierrez Guerrero, Alexis M. Brown, Paul Donat, Huabin Zhao, Stephen J. Rossiter, Laurel R. Yohe, Joshua H. Potter, Emma C. Teeling, Sonja C. Vernes, Kalina T.J. Davies, Eugene Myers, Graham M. Hughes, Zixia Huang, Federico Hoffmann, Angelique P. Corthals, David A. Ray, Liliana M. Dávalos

Biological Sciences: Faculty Publications

Comprising more than 1,400 species, bats possess adaptations unique among mammals including powered flight, unexpected longevity, and extraordinary immunity. Some of the molecular mechanisms underlying these unique adaptations includes DNA repair, metabolism and immunity. However, analyses have been limited to a few divergent lineages, reducing the scope of inferences on gene family evolution across the Order Chiroptera. We conducted an exhaustive comparative genomic study of 37 bat species, one generated in this study, encompassing a large number of lineages, with a particular emphasis on multi-gene family evolution across immune and metabolic genes. In agreement with previous analyses, we found lineage-specific …