Life Sciences Commons^™

Using Circular Dichroism Spectroscopy To Study Secondary Structure Of Horseradish Peroxidase: A Laboratory Experiment In Biochemistry, Shemaiah Kamran, Sarah E. Bultje, Kumar Sinniah

Summer Research

• We present a laboratory experiment in biochemistry to study the Far-UV Visible secondary structure of a protein (horseradish peroxidase, HRP) that can be adapted for a single-session laboratory experiment or a multiple-session laboratory project.
• A Circular Dichroism (CD) spectrometer provides structural information of proteins as a function of environmental changes such as pH and temperature. We present secondary structural information for the protein, horseradish peroxidase, at pH 3 and pH 7 in the temperature range 30-80° C in phosphate buffered solution (PBS).
• HRP has many applications in biochemistry and biotechnology. It is frequently used as a reporter enzyme in diagnostics …

A Novel Chelator For Pb-212/Bi-212-Based Alpha-Particle Radiotherapy For Cancers, Eric Doorn, Mengshi Li, Brianna Cagle, Nicholas Baumhover, Zhiming Dai, Dijie Liu, Ivy Vance, Frances Johnson, Michael K. Schultz

Summer Research

Lead-212 ( 212Pb) has been identified as a promising candidate for alpha(α)- particle radiotherapies for cancers in preclinical and clinical studies. Using a low molecular weight peptide, the radiotherapy will target with high affinity selective markers highly expressed in cancer cells but found in low concentration in healthy tissue. A radiometal is coupled to a chelator moiety linked to the peptide to deliver the α-particle radiation destroying cancer cells.

To develop a novel Pb specific chelator (PSC) that will provide high affinity to Pb212 and improve the in vitro and in vivo binding pharmacokinetics and stability of progeny of the …

Evaluating The Distribution Of Ticks (Family: Ixodidae) Of Public Health Significance In A Region Of Recent Expansion, Braden Deweerd, Andre Kapteyn, Emily Chizek, Emilia Shokoohi, Andrew Vander Tuig, Jean Tsao, Meghan May, William L. Miller

Summer Research

The blacklegged tick (Ixodes scapularis) and the lone star tick (Amblyomma americanum) are two emerging or reemerging species of ticks (Family: Ixodidae) of significant public health concern in Michigan.

Objectives:

• Surveillance for ticks and tickborne pathogens in west Michigan.
• Evaluate the spatial ecology of ticks in an area of recent expansion.

Editing Genes In Baker’S Yeast To Model Rare Mitochondrial Diseases, Alyssa Dekker, Amy Wilstermann, Rachael Baker

Summer Research

BCS1L is a nuclear-encoded mitochondrial member of the AAA+ (ATPases associated with various cellular activities) family of proteins. BCS1L functions as a translocase in the integration of the Rieske Fe/S protein into respiratory chain complex III during assembly. BCS1L may also play a role in mitochondrial morphology

Exploring The Role Of Ahr Activation In Bladder Cancer Models, Hyeon Jin Kim, Peter Jones, Josh Jang, Justin Kulchycki

Summer Research

Immune checkpoint inhibitor therapy was designed to reinvigorate immune cells to bind and kill cancer cells. However, the treatment that was intended to help patients resulted in hyper progressive disease (when the tumor shows accelerated growth, leading to an explosion of tumor growth in a short period of time). We searched for a particular gene that could function as a biomarker for hyperprogression. Upon inspecting tumor samples, we discovered a biomarker called CYP1A1. We thought to test if a tumor that expressed high levels of endogenous CYP1A1, treated with immunotherapy, ultimately led to hyper progression. Every step of the project …

Targeting Histone Reader Enl With Protac Degrader, Josiah Harsh, Zhaoyu Xue, Fan Xuan, Xiaobing Shi, Hong Wen

Summer Research

ENL is a histone reader that is part of the super elongation complex and is primarily involved in chromatin and gene expression regulation. ENL has also been found to play an essential role in the progression of a spectrum of acute myeloid leukemia (AML). Some hotspot mutations of its reader module, the YEATS domain, have been found to be oncogenic. For this reason, we explored the efficacy of a newly developed ENL PROTAC degrader in its ability to degrade wild-type and mutant ENL protein and suppress oncogene expression in cancer cells.

The Role Of Integrins In Hiv-1 Infection Of Intestinal Endothelial Cell Stimulated Resting Cd4+ T Cells, Jessica Eddy, Fisher Pham, Nathan Dapprich, Anding Shen

Summer Research

A major barrier to eradicating HIV is latent reservoirs in resting CD4+ T cells. Antiretroviral therapy is effective in bringing the viral load down to undetectable levels but is unable to eradicate the latent reservoir. Previous data from our lab revealed that when stimulated by intestinal endothelial cells (IEC), resting CD4+ T cells can be directly infected while remaining in a resting state, allowing formation of latent reservoirs. An additional study found that integrins, which are cell surface molecules, play a role in the interactions between endothelial cells (EC) and T cells. Our research further examines the role of integrins …

Urban Insect Biodiversity – Effects Of Native Landscaping, Caedmon Morget, David Warners

Summer Research

Urban development comes with the cost of destroyed natural habitats. Urban infrastructure flattens entire ecosystems, replacing them with impervious, lifeinhibiting constructions. Alleviating the impacts of urbanization is possible. Green infrastructure mitigates habitat loss by restoring native habitats within urbanized areas. One benefit of green infrastructure is the reestablishment of biodiversity, benefitting plants, animals, and insects alike. Biodiversity creates a healthier habitat and location than urban infrastructure – and lack of biodiversity – does. To investigate this benefit we performed a pilot study, sampling lawns and curb-cut raingardens (CCRGs). We compared biodiversity between restored and unrestored urban habitats.

A Tale Of Two Toxicants: How Trichloroethylene (Tce) And Perchloroethylene (Pce) Metabolites Affect Immune Cell Viability Upon Co-Exposure With Lipopolysaccharide (Lps), Eleanor Scheeres, Sean Harris, Erica Boldenow

Summer Research

• TCE and PCE are volatile organic solvents used in industrial processes, such as metal degreasing and dry cleaning, and known human carcinogens.
• GBS is a common bacteria in the vaginal flora but can lead to complications such as preterm birth during pregnancy.
• Lipopolysaccharide (LPS) is a gram-negative bacterial cell wall component that induces inflammatory immune responses and is used as an infection model.
• Co-treatment (GBS+DCVC) in placental membranes lead to inhibition of pathogen stimulated cytokine secretion (Fig. 1).
• We hypothesized that DCVC and TCVC (PCE’s metabolite) would produce decreased cell viability, and DCVC+LPS would produce further immune inhibitory effects, which …

Comparing Plant Diversity In Native Landscaping At Calvin University, Rine Wakeman, Dave Warners

Summer Research

Calvin University is home to several naturally planted sites, including woodland areas, three rain gardens, and several landscaping beds. The plants that populate these areas are native to Calvin’s watershed and West Michigan. Until this year, no database existed to keep track of which species of plants grow on campus and where. Over the summer, native sites on campus were surveyed to compile a database of the unique species found to examine the capacity for non-human, non-plant diversity on campus. How does the diversity of native sites compare to traditionally planted sites of similar size or position on Calvin University's …

Er-Golgi In Membrane Repair In Cardiomyocytes, Visakuo Tsurho, Hsin-Yu Chen, Daniel Michele

Summer Research

Impaired membrane repair leads to muscular dystrophies like Miyoshi Myopathy and LGMD2B1. The mechanism behind membrane repair is not well understood, and there are few studies on membrane repair in cardiomyocytes. Research in nonmuscle cells suggest that lysosomes are a source of membranes for repairing injuries2. Few lysosomes were found in cardiomyocytes compared to non cardiomyocytes. Therefore, we investigated the ER and Golgi as potential organelles involved in membrane repair in cardiomyocytes. We used Sec22b to investigate ER to Golgi in membrane repair in cardiomyocytes because it is an ER-Golgi protein involved in membrane fusion and Golgi vesicle trafficking in …

Floodplain Monitoring – Plaster Creek Segment At Shadyside Park, Alin Stoica, Julie Wildschut

Summer Research

• High stream velocity and flow rate during precipitation events endanger the urban areas through bank erosion and potential of flooding due to steep entrenchment of streambeds. An urban creek, Plaster Creek was impacted by this phenomenon throughout its watershed.
• Plaster Creek Stewards restored the segment of Plaster Creek located within Dutton Shadyside Park, Mi in 2018 by receding the walls of the tall banks that were entrenching the stream.
• The restored floodplains provide improved distribution of overflow water onto the plain, lowering bank erosion and sediment transportation. Native riparian vegetation planted along the plain improves biodiversity, strengthening the creek banks, …

Western Australian Sea Cucumber Resource Assessment Report, A.M. Hart, D.M. Murphy, F.F. Fabris

Fisheries Research Reports

No abstract provided.

Electrophysiological Responses To Conspecific Odorants In Xenopus Laevis Show Potential For Chemical Signaling, Heather J. Rhodes, Melanie Amo

Faculty Publications

No abstract provided.

A Study Protocol To Prepare An Rbd Protein For Vaccine Against Covid-19, Z.M.G. Sarwar Jahangir, Arleta Helena Marnik

Publications and Research

Background: SARS-CoV-2 pandemic is a global threat to humans and the world’s economy. Effective and safe vaccines against this virus are essential to control and eradicate the pandemic. The currently applied vaccines carry SARS-CoV-2 spike-protein mRNA/cDNA. These vaccines go through several cellular processes in the recipients for producing antigens. On the contrary, the SARS-CoV-2 RBD (receptor binding domain)-protein is an antigen. It will directly stimulate antibody production against SARS-CoV-2. Hence, we propose to produce SARS-CoV-2 RBD-protein as a fast acting, effective and safe vaccine.

Methods: We propose to reconstruct a plasmid carrying three types of DNA sequences: RBD cDNA, FP …

Inflammatory Response To Sleep Fragmentation In Skeletal, Cardiac, And Smooth Muscle Tissues In Female Mice, Patton Allen

Mahurin Honors College Capstone Experience/Thesis Projects

Sleep is a critical process that the body undergoes. When sleep is interrupted, so that an individual is awakened for some period before going back into sleep, the sleep can be described as fragmented. Studies in the past have shown that sleep fragmentation (SF) promotes an inflammatory environment, especially in the brain and peripheral tissue. However, studies have not been conducted to observe inflammatory responses in muscle. To examine this, C57BL/6J female mice were subjected to either a control group (no SF) or a SF group which involved using an automated SF chamber to disrupt sleep every 2 min over …

Affinity Of Cadmium Versus Zinc For The Carbonic Anhydrase Active Site, Rachel Phan

Honors Scholars Collaborative Projects

Cadmium is a heavy metal found in tobacco plants, nickel-cadmium batteries, and as a byproduct of metal mining. The similarities between the properties of zinc ions and cadmium ions in proteins due to their 2+ charges may cause displacement of zinc by cadmium if encountered and has been shown to do so in several transcription factors. Cadmium’s ability to replace zinc- a metal found in around 3,000 human proteins- is a cause for concern, especially due to its toxicity, long half-life in the body, and larger size.

Carbonic anhydrase is an important metalloprotein protein that relies on a central zinc(II) …

Ms Environmental Biology Capstone Project, Dylan Brown

Regis University Student Publications (comprehensive collection)

Chapter 1- Revisiting Tamarisk Invasion in Riparian Ecosystems: An Argument Against Single Species Management of the Southwestern Willow Flycatcher (Empidonax traillii extimus)

Chapter 2- Temporal Trends of Tamarisk Remediation to Native Vegetation Establishment

Chapter 3- Assessing Effectiveness of Tamarisk Removal Treatments Through a Meta Regression Analysis

Chapter 4- Legal Challenges of Tamarisk Removal in the Southwestern United States

Repurposing An Anti-Epileptic Drug For The Treatment Of Glioblastoma, Anjali Yadav

Theses and Dissertations

Glioblastoma multiforme (GBM) is a grade IV malignant glioma. It is a highly proliferative form of brain tumor with 5-year survival rate ~ 5% indicating a high mortality rate. Current treatment strategies for GBM include surgery, radiation, and chemotherapy. Surgical resection is challenging due to vital function of brain and as GBM often metastasizes in different brain regions. Additionally, development of resistance against the standard of care drug temozolomide (TMZ) is a major challenge in GBM management. GBM is also shielded with the blood brain barrier (BBB) which prevents the entry of several drugs. Therefore, a new drug must overcome …

A Vascular Flora Of The Selkirk Mountains, Bonner And Boundary Counties, Idaho, Harpo Faust, Ben Legler, David C. Tank

Aliso: A Journal of Systematic and Floristic Botany

The vascular flora described here covers ~2295 square kilometers (~886 square miles) of the Selkirk Mountains that lie in the Idaho Panhandle, covering an elevational range of 540–2330 m (1770–7670 ft). The majority of the mountain range is underlain by granitic rock of the Kaniksu Batholith, and is diversified by the rich glacial history of the Panhandle. The study area contains multiple pockets of alluvial and glacial deposition that serve as specialized habitat for present-day floristic diversity within the range. The Idaho Selkirks are part of the Northern Rocky Mountains and have floristic influences from the Pacific coast, boreal north, …

How Deep Do We Have To Go To Rehabilitate Evolutionary Psychology? Reply To Bjorklund, Ellis, & Geary (2022), David S. Moore, David C. Witherington, Darcia Narvaez, Timothy I. Vandiver, Robert Lickliter

Pitzer Faculty Publications and Research

Disciplines like evolutionary-developmental psychology admirably focus on trying to rehabilitate Narrow Evolutionary Psychology (NEP) from within, by adding a developmental focus to NEP’s tenets of adaptationism and computationalism. We argue, however, that these tenets are fundamentally incompatible with taking psychology and its development seriously, and that the kinds of modifications introduced by evolutionary-developmental psychologists do not go deep enough to qualitatively change the non-developmental outlook of NEP.

Evolving Evolutionary Psychology, Darcia Narvaez, David S. Moore, David C. Witherington, Timothy I. Vandiver, Robert Lickliter

Pitzer Faculty Publications and Research

Which evolutionary theory can best benefit psychological theory, research, and application? The most well-known school of evolutionary psychology has a narrow conceptual perspective (a.k.a., “Narrow Evolutionary Psychology” or NEP). Proponents of NEP have long argued that their brand of evolutionary psychology represents a full-fledged scientific revolution, with Buss (2020) recently likening NEP’s scientific impact to that of a Copernican or Darwinian paradigm shift. However, NEP stands on two traditions that are now the subjects of serious debate and revision: the neo-Darwinian adaptationist framework within evolutionary biology, and the computationalist “mind-as-computer” framework within cognitive science. Although NEP calls itself revolutionary, the …

Impact Of Introductory Physics For The Life Sciences In A Senior Biology Capstone Course, Benjamin D. Geller , '01, Jack Rubien , '20, Sara Hiebert Burch, Catherine Hirshfeld Crouch

Physics & Astronomy Faculty Works

A goal of introductory physics for life sciences (IPLS) curricula is to prepare students to effectively use physical models and quantitative reasoning in biological and medical settings. To assess whether this goal is being met, we conducted a longitudinal study of the impact of IPLS on student work in later biology and chemistry courses. We report here on one part of that study, a comparison of written responses by students with different physics backgrounds on a diffusion task administered in a senior biology capstone course. We observed differences in student reasoning that were found to be associated with prior or …

Stylosanthes Hamata - Environmental Weed Risk Assessment 2022, Department Of Primary Industries And Regional Development, Western Australia

Environmental Weed Risk Assessments

Introducing new plants to an area may have both positive and negative effects on the environment, economy and community. To minimise the negative environmental impact of introducing new agricultural species, DPIRD conducts a risk assessment procedure based on widely accepted scientific standards. This report assesses Caribbean stylo (Stylosanthes hamata). Caribbean stylo (Stylosanthes hamata) is an annual or short-lived perennial herbaceous legume. Individual plants behave as self-regenerating annuals or biennials. In the Northern Territory up to 40% of plants persist from one wet season to the next (Cameron 2010), but this varies depending on the length of the dry season. It …

Triticum Aestivum - Environmental Weed Risk Assessment 2022, Department Of Primary Industries And Regional Development, Western Australia

Environmental Weed Risk Assessments

Introducing new plants to an area may have both positive and negative effects on the environment, economy and community. To minimise the negative environmental impact of introducing new agricultural species, DPIRD conducts a risk assessment procedure based on widely accepted scientific standards. This report assesses Wheat (Triticum aestivum). Wheat is an annual grass widely cultivated for its seed, a cereal grain which is a worldwide staple food. It is the major temperate cereal grown across the grain growing areas of southern Australia and in temperate and subtropical environments around the world. Wheat cultivation goes back to ancient times and seems …

Sulfated Flavonoids In The Asteraceae, Alyssa Rice

Senior Honors Projects

Gypsum soils are a unique soil type with high levels of calcium and sulfur, which creates a harsh living environment for plants. To survive these conditions, plants have evolved a suite of mechanisms to survive these excess minerals, such as sulfur. In this study we aimed to determine if gypsum status was related to sulfated flavonoid production in plants of the Asteraceae. Flower and leaf tissues were collected from herbarium specimens representing gypsophiles, gypsovags, and gypsofuges. These tissues were analyzed for the presence of sulfated flavonoids using Thin Layer Chromatography (TLC). We observed sulfated flavonoid production in leaf and flower …

Deoxybuzonamine Isomers From The Millipede Brachycybe Lecontii (Platydesmida: Andrognathidae), Tappy H. Jones, Daniel P. Harrison, Carla Menegatti, Emily Levers, Kenneth Knott, Paul Marek, Derek A. Hennen, Matt T. Kasson, Angie M. Macias, Brian Lovett, Ralph Saporito

2022 Faculty Bibliography

Millipedes (Diplopoda) are well known for their toxic or repellent defensive secretions. Here, we describe (6aR,10aS,10bR)-8,8-dimethyldodecahydropyrrolo[2,1-a]isoquinoline [trans-anti-trans-deoxybuzonamine (1a)] and (rel-6aR,10aR,10bR)-8,8-dimethyldodecahydropyrrolo[2,1-a]isoquinoline [trans-syn-cis-deoxybuzonamine (1b)], two isomers of deoxybuzonamine found in the chemical defense secretions of the millipede Brachycybe lecontii Wood (Colobognatha, Platydesmida, Andrognathidae). The carbon–nitrogen skeleton of these compounds was determined from their MS and GC-FTIR spectra obtained from the MeOH extract of whole millipedes, along with a subsequent selective synthesis. Their structures were established from their 1D (¹H, ¹³C) and 2D NMR (COSY, NOESY, multiplicity-edited HSQC, HSQC-TOCSY, HMBC) spectra. Additionally, computational chemistry (DFT and DP4) was used to identify the relative …

Gender Differences And The Influence Of Body Composition On Land And Pool-Based Assessments Of Anaerobic Power And Capacity, Jacquelyn N. Zera, Elizabeth F. Nagle, Emma Connell, Erin Curtin, Wilmina Marget, Anna P. Simonson, Takashi Nagai, John Abt, Scott Lephart

2022 Faculty Bibliography

No abstract provided.

Effects Of Chronic Oral Administration Of Midazolam On Memory And Circadian Rhythms In Rats, Helen M. Murphy, Anastasiya I. Kalinina, Cyrilla H. Wideman

2022 Faculty Bibliography

Studies have shown the ability of benzodiazepine drugs to cause memory loss in animals and humans. Midazolam is a benzodiazepine commonly administered intravenously during surgical procedures because it reacts rapidly, causes anterograde amnesia, and has few side effects. It has also been used in palliative medicine where, among others, an oral route has been employed for chronic administration of the drug. The current study evaluated the effects of chronic orally administered midazolam on spatial working memory and procedural memory in control and experimental female rats over a threeweek experimental period utilizing the Morris water maze. Sample and test run times …

Om92, A Glp-1 Enhancer Mutation, Is An Allele Of Ekl-1, Samantha A. Stein, Olivia F. Zucaro, Harold E. Smith, Kevin F. O'Connell, Jill M. Spoerke, Eleanor M. Maine, James L. Lissemore

2022 Faculty Bibliography

Germline stem cell proliferation in C. elegans requires activation of the GLP-1/Notch receptor, which is located on the germline plasma membrane and encoded by the glp-1 gene. We previously identified several genes whose products directly or indirectly promote activity of the GLP-1 signaling pathway by finding mutations that enhance the germline phenotype of a glp-1(ts) allele, glp-1(bn18) . Here, we report phenotypic and molecular analysis of a new ekl-1 allele, ekl-1(om92) , that enhances the glp-1(bn18) phenotype. ekl-1(om92) is a 244 bp deletion predicted to generate a frameshift and premature termination codon, yielding a severely truncated protein, suggesting it is …