Life Sciences Commons^™

Multifunctional Bioactive Properties Of Plant-Based Protein Hydrolysates Derived From Citrullus Colocynthis (Bitter Apple) And Pennisetum Glaucum (Pearl Millet) Seeds, Munira Jassem Alblooshi

Theses

Protein hydrolysates (PH) from plant-based proteins (PBP) are gaining importance due to the availability, sustainable and economical production when compared to their an-imal origin counterpart. Therefore, this study explored under-utilized PBP hydroly-sates derived from Bitter apple (BA) and Pearl millet (PM) and determined their bio-active properties. Enzymatic hydrolysis (EH) of BA and PM proteins was carried out by enzymes such as alcalase (A), bromelain (B), and chymotrypsin (C) for 3, 6, and 9 h to produce PH possessing high bioactive properties. Highest degree of hydrolysis (DH) was reported in BAPH generated with C9 (87.8%) whereas for PMPH highest DH was …

Optimizing Stable Isotope Sampling Design In Terrestrial Movement Ecology Research, Andrea Contina, Sarah Magozzi, Hannah B. Vander Zanden, Gabriel J. Bowen, Michael B. Wunder

School of Integrative Biological & Chemical Sciences Faculty Publications

1. The recognition of adequate sampling designs is an interdisciplinary topic that has gained popularity over the last decades. In ecology, many research questions involve sampling across extensive and complex environmental gradients. This is the case for stable isotope analyses, which are widely used to characterize large-scale movement patterns and dietary preferences of organisms across taxa. Because natural-abundance stable isotope variation in the environment is incorporated into inert animal tissues, such as feathers or hair, it is possible to draw inferences about the type of food and water resources that individuals consumed and the locations where tissues were synthesized. However, modern …

Impact Of Saline Water Irrigation On Date Palm (Phoenix Dactylifera) Associated Bulk Soil Bacterial Communities In Oases Agroecosystem Of Uae, Fardous Abdi Ibrahim Jibar Alhashmi

Theses

Irrigation of date palm (Phoenix dactylifera) with saline groundwater is routinely practiced in the arid agroecosystems of United Arab Emirates (UAE), due to freshwater scarcity. Saline groundwater irrigation is known to deposit salts in the top layers of soil and increase soil salinization. However, how increasing soil salinization affects the belowground bacterial communities, is not well investigated. Soil samples were collected from 14 different date farms where irrigation water source was either non–saline water or saline groundwater. Soil bacterial communities were identified using 16S rRNA gene metabarcoding. The results showed that bacterial diversity (including Shannon diversity, richness, and …

Factors Affecting The Antibacterial Activity Of Cefiderocol On Klebsiella Pneumoniae With Diverse Characteristics, Lana Jamal Rashed Daoud

Theses

Antimicrobial resistance (AMR) is a growing serious threat that poses a burden on the healthcare system. Spread of AMR bacteria limits treatment options; thus, new antimicrobial agents are required. Cefiderocol (CFDC) is a novel siderophore cephalosporin, approved by the FDA in 2019 for use in treating infections caused by multi-drug resistant (MDR) pathogens; but it is not yet in clinical use in the UAE. CFDC is equipped with stabilizers against β-lactamases as well as a siderophore side chain that allows it to penetrate the outer membrane of bacteria through the iron uptake pathways. The aim of this study is to …

Immunosuppression Broadens Evolutionary Pathways To Drug Resistance And Treatment Failure During Acinetobacter Baumannii Pneumonia In Mice, Wenwen Ho, Lindsay M. Busch, Juan Hernandez-Bird, Efrat Hamami, Christopher Marshall, Edward Geisinger, Vaughn S. Cooper, Tim Van Opijnen, Jason W. Rosch, Ralph R. Isberg

Biological Sciences Faculty Research and Publications

Acinetobacter baumannii is increasingly refractory to antibiotic treatment in healthcare settings. As is true of most human pathogens, the genetic path to antimicrobial resistance (AMR) and the role that the immune system plays in modulating AMR during disease are poorly understood. Here we reproduced several routes to fluoroquinolone resistance, performing evolution experiments using sequential lung infections in mice that are replete with or depleted of neutrophils, providing two key insights into the evolution of drug resistance. First, neutropenic hosts acted as reservoirs for the accumulation of drug resistance during drug treatment. Selection for variants with altered drug sensitivity profiles arose …

Immunosuppression Broadens Evolutionary Pathways To Treatment Failure During Acinetobacter Baumannii Pneumonia, Wenwen Huo, Lindsay M. Busch, Juan Hernandez-Bird, Efrat Hamami, Christopher Marshall, Edward Geisinger, Vaughn S. Cooper, Tim Van Opijnen, Jason W. Rosch, Ralph R. Isberg

Biological Sciences Faculty Research and Publications

Acinetobacter baumannii is increasingly refractory to antibiotic treatment in healthcare settings. As is true of most human pathogens, the genetic path to antimicrobial resistance (AMR) and the role that the immune system plays in modulating AMR during disease are poorly understood. Here we reproduced several routes to fluoroquinolone resistance, performing evolution experiments using sequential lung infections in mice that are replete or depleted of neutrophils, providing two key insights into the evolution of drug resistance. First, neutropenic hosts acted as reservoirs for the accumulation of drug resistance during drug treatment. Selection for variants with altered drug sensitivity profiles arose readily …

Bridge To The Future: Important Lessons From 20 Years Of Ecosystem Observations Made By The Ozflux Network, Jason Beringer, Caitlin E. Moore, Jamie Cleverly, David I. Campbell, Helen Cleugh, Martin G. De Kauwe, Miko U. F. Kirschbaum, Anne Griebel, Sam Grover, Alfredo Huete, Lindsay B. Hutley, Johannes Laubach, Tom Van Niel, Stefan K. Arndt, Alison C. Bennett, Lucas A. Cernusak, Derek Eamus, Cacilia M. Ewenz, Jordan P. Goodrich, Mingkai Jiang, Nina Hinko-Najera, Peter Isaac, Sanaa Hobeichi, Jürgen Knauer, Georgia R. Koerber, Michael Liddell, Xuanlong Ma, Craig Macfarlane, Ian D. Mchugh, Belinda E. Medlyn, Wayne S. Meyer, Alexander J. Norton, Jyoteshna Owens, Andy Pitman, Elise Pendall, Suzanne M. Prober, Ram L. Ray, Natalia Restrepo-Coupe, Sami W. Rifai, David Rowlings, Louis Schipper, Richard P. Silberstein, Lina Teckentrup, Sally E. Thompson, Anna M. Ukkola, Aaron Wall, Ying-Ping Wang, Tim J. Wardlaw, William Woodgate

Research outputs 2022 to 2026

In 2020, the Australian and New Zealand flux research and monitoring network, OzFlux, celebrated its 20^th anniversary by reflecting on the lessons learned through two decades of ecosystem studies on global change biology. OzFlux is a network not only for ecosystem researchers, but also for those ‘next users’ of the knowledge, information and data that such networks provide. Here, we focus on eight lessons across topics of climate change and variability, disturbance and resilience, drought and heat stress and synergies with remote sensing and modelling. In distilling the key lessons learned, we also identify where further research is needed …

Duodenal Metabolic Profile Changes In Heat-Stressed Broilers, Jalila S. Dridi, Elizabeth Greene, Craig W. Maynard, Giorgio Brugaletta, Alison Ramser, Courtney J. Christopher, Shawn R. Campagna, Hector F. Castro, Sami Dridi

Poultry Science Faculty Publications and Presentations

Heat stress (HS) is devastating to poultry production sustainability worldwide. In addition to its adverse effects on growth, welfare, meat quality, and mortality, HS alters the gut integrity, leading to dysbiosis and leaky gut syndrome; however, the underlying mechanisms are not fully defined. Here, we used a high-throughput mass spectrometric metabolomics approach to probe the metabolite profile in the duodenum of modern broilers exposed to acute (AHS, 2 h) or chronic cyclic (CHS, 8 h/day for 2 weeks) HS in comparison with thermoneutral (TN) and pair-fed birds. Ultra high performance liquid chromatography coupled with high resolution mass spectrometry (UHPLC–HRMS) identified …

Failure Of Excess Leucine To Impact Live Performance And Carcass Traits In Male And Female Cobb Mv X 500 Broilers During A 15-To 32-Day Grower Period, C. W. Maynard, G. J. Mullenix, C. J. Maynard, J. T. Lee, S. K. Rao, L. D. Butler, J. Z. Hiltz, S. K. Orlowski, M. T. Kidd

Poultry Science Faculty Publications and Presentations

Modern broiler diets may contain excess levels of leucine due to the increased level of this amino acid in cereal grains. Excessive levels of leucine have previously been shown to negatively influence broiler performance due to branched-chain amino acid antagonism. Therefore, 2 leucine titrations were conducted in male and female Cobb 500 broilers. Low and high leucine diets were formulated to contain leucine to lysine ratios of 115 and 170, respectively. These diets were subsequently blended to produce 6 experimental diets containing leucine to lysine ratios of: 115, 126, 137, 148, 159, and 170. Pelleted diets were fed to 8 …

Interactions Of The Branched-Chain Amino Acids. 2. Practical Adjustments In Valine And Isoleucine, C. W. Maynard, G. J. Mullenix, C. J. Maynard, J. T. Lee, S. K. Rao, L. D. Butler, S. K. Orlowski, M. T. Kidd

Poultry Science Faculty Publications and Presentations

Reductions in dietary crude protein have potentially allowed for the occurrence of branched chain amino acid antagonism which can negatively influence live performance and carcass traits. Therefore, 2 factorial studies were conducted with the first experiment evaluating valine and leucine interactions during a 32 to 45 d finisher period, while the second experiment evaluated valine and isoleucine interactions during a 39 to 52 d withdrawal period. Valine, leucine, nor their subsequent interaction influenced broiler live performance or carcass traits in Experiment 1. However, a valine x leucine interaction was observed for average woody breast score and occurrence of scores of …

Interactions Of The Branched-Chain Amino Acids. 1. Influence Of Dietary Isoleucine And Leucine On The Valine Requirement Of Male Cobb Mv X 500 Broilers For A 29-To 42-Day Finisher Period, C. W. Maynard, G. J. Mullenix, C. J. Maynard, J. T. Lee, J. Caldas, J. Z. Hiltz, S. K. Orlowski, M. T. Kidd

Poultry Science Faculty Publications and Presentations

Branched-chain amino acid requirements have traditionally been determined using dose-response titrations without accounting for the influence of branched-chain amino acid antagonism. As recent data has indicated that inherent levels of the non-tested amino acid may influence response curves in diets mimicking industry, these methods may result in over or under estimation of requirement values. Therefore, an experiment was conducted to determine if dietary levels of isoleucine and leucine influence 29 to 42 day valine needs through the implementation of a 5 x 2 x 2 factorial design. Twenty diets were fed to 7 replicate pens of 12 broilers. Body weight …

Effects Of Heat Stress On Cyto(Chemo)Kine And Inflammasome Gene Expression And Mechanical Properties In Isolated Red And White Blood Cells From 4 Commercial Broiler Lines And Their Ancestor Jungle Fowl, Elizabeth S. Greene, Elizabeth Adeogun, Sara K. Orlowski, Karthik Nayani, Sami Dridi

Poultry Science Faculty Publications and Presentations

Commercial broilers have been selected for high growth rate and productivity; however, this has negatively impacted their susceptibility to heat stress (HS). Insight into the molecular mechanisms underlying this vulnerability can help design targeted strategies for improvement of HS tolerance. Red blood cells (RBC) and white blood cells (WBC) were isolated from red jungle fowl and 4 lines of commercial modern broilers. Lines A and B are considered standard-yielding lines, whereas Lines C and D are high-yielding. Cells were cultured at either 37 degrees C or 45 degrees C for 2 h to induce …

The Use Of Actinobacteria To Improve The Efficacy Of Phytoremediation Of Heavy Metal-Polluted Soils In The United Arab Emirates, Fatima Abdulmoneim Hussain

Theses

In an effort to gain the advantages provided by actinobacterial enzyme (1- aminocyclopropane-1-carboxylic acid) (ACC) deaminase (ACCD) in the phytoremediation of heavy metals from the environment, the ability of native actinobacteria with ACC deaminase activity to promote the growth of Bermuda grass (Cynodon dactylon L.) in soils contaminated with nickel nitrate was evaluated under greenhouse conditions. This enzyme hydrolyzes (ACC), the immediate biosynthetic precursors of the hormone ethylene (ET) in plant tissues to ammonia and α keto-butyrate. The main objectives of this study were: (1) Isolating beneficial native heavy metal-tolerant actinobacteria from the United Arab Emirates (UAE) contaminated soil capable …

One-Stage Blind Source Separation Via A Sparse Autoencoder Framework, Jason Anthony Dabin

Dissertations

Blind source separation (BSS) is the process of recovering individual source transmissions from a received mixture of co-channel signals without a priori knowledge of the channel mixing matrix or transmitted source signals. The received co-channel composite signal is considered to be captured across an antenna array or sensor network and is assumed to contain sparse transmissions, as users are active and inactive aperiodically over time. An unsupervised machine learning approach using an artificial feedforward neural network sparse autoencoder with one hidden layer is formulated for blindly recovering the channel matrix and source activity of co-channel transmissions. The BSS sparse autoencoder …

Assessing Structural And Functional Brain Alterations And Work-Related Fatigue In Non-Hyposmic And Hyposmic Covid-19 Survivors, Rakibul Hafiz

Dissertations

In the year 2019, life began to change at the advent of a global pandemic caused by the novel coronavirus. Mask mandates and mass vaccinations have mitigated the effects significantly, yet cases keep rising with new variants, especially, in densely populated countries, like India. Recent neuroimaging evidence shows the virus can attack the central nervous system (CNS). However, exactly which brain regions undergo structural and functional changes remain largely unknown. Many patients experience 'loss of/reduced sense of smell' (i.e., hyposmic) and an alarming number of survivors develop persistent symptoms ('long-COVID') for several months after initial infection. Fatigue is the most …

Repeated Low-Level Blast Induces Chronic Neuroinflammation And Neurobehavioral Changes In Rat Models, Arun Reddy Ravula

Dissertations

Blast-induced neurotrauma (bTBI) is a signature medical concern for military personnel when they are exposed to explosions in active combat zones. However, soldiers as well as law enforcement personnel are also repeatedly exposed to low-level blasts during training sessions with heavy weaponries as part of combat readiness. Service personnel who sustain brain injuries from repeated low-level blasts (rLLBs) do not display overt pathological symptoms immediately but rather develop cognitive impairments, attention deficits, anxiety, and sleep disturbances over time. An improved rat model of rLLB was developed in this thesis by applying controlled low-level blast pressures (10 psi) repeated five times …

Bodipy-Based Light-Responsive Materials, Zhaoxiong Wan

Dissertations

The energy required for life on our planet is provided by light. In science, light is an important and powerful tool for measuring and modifying substances. For example, under the effect of illumination, light-responsive materials can change their physical and chemical properties. Photochemistry is a branch of research to study the effects of light irradiation on chemical structures and reactions. Some photochemical changes could lead to chemical bond dissociation (such as in photosynthesis) and structure isomerization (such as in the retina). Photochemistry has a strong relationship with human lives and it is essential in many ways. Among photophysics, fluorescence emission …

Can Financialization Save Nature? The Case Of Endangered Species, Diane-Laure Arjalies, Delphine Gibassier

Business Publications

The current biodiversity loss is dramatic. Over the past 50 years, more than 68% of the mammals, birds, amphibians, reptiles, and fish on earth have disappeared, putting the planet's survival and its inhabitants – including human beings – at risk (WWF, 2020). Financialization, or the transformation of nature into financial assets, is increasingly proposed as a solution to the biodiversity crisis. Proponents of financialization believe that assigning a monetary value to nature will incentivize human beings to protect habitats and their species. This article offers a four-mechanism model of nature’s financialization, explaining why it is virtually impossible to financialize nature. …

Plectus Of The Prairie: A Case Study Of Taxonomic Resolution From A Nematode Biodiversity Survey, Abigail Borgmeier, Kaitlin Gattoni, Timothy Harris, Rebecca Higgins, Peter Mullin, Dorota Porazinska, Kirsten S. Powers, David A. Wedin, Tom Powers

Department of Plant Pathology: Faculty Publications

Taxonomic resolution is a critical component of biodiversity assessments. In this case study, we examined a single taxon within a larger study of nematode diversity to evaluate the taxonomic resolution of different diversity assessment methods. The selected taxon was the microbial-feeding genus Plectus, a group considered to include multiple cosmopolitan species. The methods included a morphological evaluation by light microscopy, Sanger sequencing of PCR amplicons of COI and 18S gene regions, and 18S metabarcoding sequencing. The study sites were 15 remnant tallgrass prairie plots in eastern Nebraska. In the morphological analysis, we observed two basic morphotypes, a short-tailed form …

A Detailed Parameter Study Into The Dermal Absorption Of Chemical Warfare Agents And The Effects Of Pharmacokinetics, Koko Lear

Theses

Chemical warfare agents (CWAs) are substances of varying toxicity profiles. These chemicals exhibit complex dynamics and pose a serious health risk when released into the environment. A mathematical model based on Fick’s second law of diffusion was developed to comprehend how these compounds were absorbed into the skin. The analysis applied to both small and large doses and, successfully, predicted experimental results. This work also includes the effects of CWA physicochemical properties on evaporation and dermal absorption through the stratum corneum. A sensitivity analysis was conducted to assess the impacts of small variations in the initial dose, environmental conditions, and …

Regulation Of Activity Patterns In Astyanax Mexicanus Cavefish, Udodirim Nwosu

Theses

Organisms commonly modulate their behavioral activity in relation to the 24-hour solar cycle. This modulation of behavior is driven by a combination of responses to external cues in the environment, such as light/dark visual signals, and internal pattern generators that can persist in the absence of external cues. However, there are animals that live in caves or in the deep sea that are isolated from solar circadian cues. How these animals regulate their behavioral activity in relation to external and internal rhythms is an open question in neuroscience that may help us to understand the mechanisms that other animals, including …

In Silico Identification Of Potential Inhibitors Of The Sars‑Cov‑2 Nucleocapsid Through Molecular Docking‑Based Drug Repurposing, Rukhsar Afreen, Saleem Iqbal, Ab Rauf Shah, Heena Afreen, Maitreyi College, Mohd. Shkir

Department of Biochemistry: Faculty Publications

SARS-CoV-2 is the virus responsible for the COVID-19 pandemic, and its effects on people worldwide continue to grow. Protein-targeted therapeutics are currently unavailable for this virus. As with other coronaviruses, the nucleocapsid (N) protein is the most conserved RNA-binding structural protein of SARS-CoV-2. The N protein is an appealing target because of its functional role in viral transcription and replication. Therefore, molecular docking method for structure-based drug design was used to investigate the binding energy and binding modes of various anti-N inhibitors in depth. The inhibitors selected were originally developed to target stress granules and other molecules involved in RNA …

The Effects Of Aging On Wound Healing And Limb Regeneration In The Axolotl, Hande Sahin

Graduate Masters Theses

The Mexican axolotl is capable of regenerating various parts of its body and maintains this capacity throughout its entire life. Although this ability is sustained through adulthood, multiple regenerative processes appear to be negatively affected by aging. Here, we focus on evaluating the effect of aging on the rate of wound healing and limb regeneration. We have developed new in vivo, and ex vivo assays to characterize wound healing and identify differences between young and aged animals during this process. We have also characterized morphological features of mature skin from both groups of animals and although there are no obvious …

Modelling Juxtacrine Mediated Tumor-Fibroblast Interactions In Three-Dimensional Co-Cultures Of Pancreatic Ductal Adenocarcinoma, Eric Struth

Graduate Masters Theses

The tumor-microenvironment is a rich and complex milieu of mutated cancer cells and otherwise healthy cells engaged in dynamic interactions. Fibroblasts, the most abundant cellular component of human connective tissues, are implicated in a tumor promoting process known as stromal crosstalk. This stromal crosstalk is driven by numerous signaling pathways including contact mediated juxtacrine signaling and directed long distance paracrine signaling. Recent research suggests these signaling pathways are particularly important for two distinct types of fibroblasts. Mayofibroblastic cancer associated fibroblasts (MyCAFs) are associated with tumor suppression and shown to rely primarily on juxtacrine signaling, while inflammatory cancer associated fibroblasts (iCAFs) …

Small-Scale Salt Marsh Sedimentation Is Determined By Interactions Between Cordgrass Morphology And Local Abiotic Factors, Wendi K. White

Graduate Masters Theses

Globally, 25-50% of salt marsh area has been lost due to anthropogenic impacts, including sea level rise (SLR). Sea level rise impacts can be slowed by vertical accretion of sediments and organic matter. While sedimentation at large-scales is determined by supply, sediment availability, flow rates, and marsh topography, at small scales modification of flows by vegetation might alter sedimentation rates. Sedimentation rates in marshes are likely influenced by Spartina that slow water flow. Sites representative of a SLR-future have stands of S. alterniflora that differ in height, stem diameter, stem density, and blade width; relative to marshes more representative of …

On The Roles Of Trait Anxiety And Toll Like Receptor 4 In Amphetamine Sensitization In Adolescent Male Rats, Corey A. Calhoun

Graduate Doctoral Dissertations

Mammalian adolescence can be a difficult transition from childhood to adulthood, where increases in impulsivity and novelty- and risk-seeking are combined with heightened affect and elevated sensitivity to stress. Indeed, during adolescence, first drug use patterns emerge and in the continental United States, increasing misuse of amphetamines has been observed in adolescent youth. Myriad neural mechanisms underlie this shift in adolescence, including the dynamic remodeling of the mesocorticolimbic (MCL) pathway. Repeated drug administration affects neuroimmune substrates within the MCL circuit including toll-like receptor 4 (TLR4)Advances in addiction neuroscience indicate that drugs of abuse activate neural TLR4 and implicate glial TLR4 …

Integrating Deep Learning And Hydrodynamic Modeling To Improve The Great Lakes Forecast, Pengfei Xue, Aditya Wagh, Gangfeng Ma, Yilin Wang, Yongchao Yang, Tao Liu, Chenfu Huang

Michigan Tech Publications, Part 1

The Laurentian Great Lakes, one of the world’s largest surface freshwater systems, pose a modeling challenge in seasonal forecast and climate projection. While physics-based hydrodynamic modeling is a fundamental approach, improving the forecast accuracy remains critical. In recent years, machine learning (ML) has quickly emerged in geoscience applications, but its application to the Great Lakes hydrodynamic prediction is still in its early stages. This work is the first one to explore a deep learning approach to predicting spatiotemporal distributions of the lake surface temperature (LST) in the Great Lakes. Our study shows that the Long Short-Term Memory (LSTM) neural network, …

Rethinking Human-Local Wildlife Relations, Yin Chan

Critical and Creative Thinking Capstones Collection

The plight of suburban wildlife receives considerably less attention than that of exotic or endangered species despite facing similar threats due to the decline of their natural habitats as humans expand upon them. From the perspective of a reflective practitioner, this paper provides new avenues to rethink current views on human-local wildlife relations and answer some of the difficult questions surrounding the topic. The methodology of Action Research is employed to explore concepts relevant to human-local wildlife relations. A synthesized practical framework integrating Action Research with Permaculture Design is proposed to create models for mutually beneficial coexistence between local wildlife …

Optimization Of Polyhydroxyalkanoates (Phas) Bioplastic Production From Wastewater Activated Sludge, Bo Deng

Dissertations

Polyhydroxyalkanoate (PHA) is a biopolymer which has similar properties as fossil-fuel based plastic but also has capacity to biodegrade completely in the environment condition. This project aims to optimize the process to produce bioplastic PHA using activated sludge from wastewater. Specifically, five major research objectives are explored: (i) develop a quantification method of PHA by using Fourier-transform infrared spectroscopy (FTIR)F; (ii) improve the PHA production from mixed microbial cultures (MMC) by optimizing MMC; (iii) simulate the PHA production by using wastewater; (iv) evaluate the application of enzyme (alpha-amylase) in PHA production process; (v) market the investigation of wastewater produced PHA. …

A Bioactive Composite Scaffold Containing Zinc For Bone Tissue Engineering, Jennifer W. Moy

Dissertations

Non-union bone fractures occur during 5-10% of all bone fractures where the fracture is incapable of healing despite current surgical interventions with the use of bone grafts and graft substitutes. As an alternative, studies utilize growth factors and other biomolecules to differentiate mesenchymal stem cells into osteoblasts to aid in bone formation in vitro and in vivo studies. Zinc has known insulin-mimetic properties and are incorporated into multiple tissue engineering approaches to aid in osteogenesis, bone formation, and vascularization. In this work, mesenchymal stem cells (MSCs) were evaluated for the effect of zinc on osteogenesis. The supplementation of zinc in …