Life Sciences Commons^™

External Validation Of A Laboratory Prediction Algorithm For The Reduction Of Unnecessary Labs In The Critical Care Setting

Faculty, Staff and Student Publications

BACKGROUND: Unnecessary laboratory tests contribute to iatrogenic harm and are a major source of waste in the health care system. We previously developed a machine learning algorithm to help clinicians identify unnecessary laboratory tests, but it has not been externally validated. In this study, we externally validate our machine learning algorithm.

METHODS: To externally validate the machine learning algorithm that was originally trained on the Medical Information Mart for Intensive Care (MIMIC) III database, we tested the algorithm in a separate institution. We identified and abstracted data for all patients older than 18 years admitted to the intensive care unit …

Recurrent Neural Network Models (Covrnn) For Predicting Outcomes Of Patients With Covid-19 On Admission To Hospital: Model Development And Validation Using Electronic Health Record Data, Bingyu Mao, Khush Patel, Yujia Zhou, Wanheng Zhang, Angela Ross, Hua Xu, Degui Zhi

Faculty, Staff and Student Publications

BACKGROUND: Predicting outcomes of patients with COVID-19 at an early stage is crucial for optimised clinical care and resource management, especially during a pandemic. Although multiple machine learning models have been proposed to address this issue, because of their requirements for extensive data preprocessing and feature engineering, they have not been validated or implemented outside of their original study site. Therefore, we aimed to develop accurate and transferrable predictive models of outcomes on hospital admission for patients with COVID-19.

METHODS: In this study, we developed recurrent neural network-based models (CovRNN) to predict the outcomes of patients with COVID-19 by use …

Influence Of The Type Of Pollen Diet On The Survival, Body Weight, And Immune Response In The African Honeybee, Michael N.K. Muturi, Joel L. Bargul, H. Michael G. Lattorff

All Peer-Reviewed Publications

Pollen nutrition is critical for the development and well-being of the honeybee. Previous studies have compared the effect of pollen and carbohydrate-only diet on honeybee physiology. The effect of a monofloral versus polyfloral diet on the African honeybee (Apis mellifera scutellata) is poorly understood. This knowledge is critical as diversity-rich habitats are being altered to less diverse environments through increased urbanization and intensified agricultural activities, particularly in sub-Saharan Africa. Here, we report how lowly diverse (LD) and highly diverse (HD) pollen diets influence honeybee life-history traits and physiology. To achieve this, we fed caged bees with the two pollen diets …

Editorial: Engineering Nucleic Acids-Based Functional Nanomaterials, Nanodrugs, And Biosensors, Jabrane Jouha, Fengli Li, Wen-Ta Su, Chenguang Fan, Dayong Yang, Hai Xiong

Chemistry & Biochemistry Faculty Publications and Presentations

Editorial on the Research Topic: Engineering Nucleic Acids-Based Functional Nanomaterials, Nanodrugs, and Biosensors

Differential Gene Expression In Tall Fescue Tissues In Response To Water Deficit, Manohar Chakrabarti, Padmaja Nagabhyru, Christopher L. Schardl, Randy D. Dinkins

School of Integrative Biological & Chemical Sciences Faculty Publications

Tall fescue (Festuca arundinacea Schreb.) is a popular pasture and turf grass particularly known for drought resistance, allowing for its persistence in locations that are unfavorable for other cool-season grasses. Also, its seed-borne fungal symbiont (endophyte) Epichloë coenophiala, which resides in the crown and pseudostem, can be a contributing factor in its drought tolerance. Because it contains the apical meristems, crown survival under drought stress is critical to plant survival as well as the endophyte. In this study, we subjected tall fescue plants with their endophyte to water-deficit stress or, as controls with normal watering, then compared plant …

Field-Evolved Δg210-Ppo2 From Palmer Amaranth Confers Pre-Emergence Tolerance To Ppo-Inhibitors In Rice And Arabidopsis, Pamela Carvalho-Moore, Gulab Rangani, Ana Claudia Langaro, Vibha Srivastava, Aimone Porri, Steven J. Bowe, Jens Lerchl, Nilda R. Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Resistance to protoporphyrinogen IX oxidase (PPO)-inhibitors in Amaranthus palmeri and Amaranthus tuberculatus is mainly contributed by mutations in the PPO enzyme, which renders herbicide molecules ineffective. The deletion of glycine210 (ΔG210) is the most predominant PPO mutation. ΔG210-ppo2 is overexpressed in rice (Oryza sativa c. ‘Nipponbare’) and Arabidopsis thaliana (Col-0). A foliar assay was conducted on transgenic T1 rice plants with 2× dose of fomesafen (780 g ha−1), showing less injury than the non-transgenic (WT) plants. A soil-based assay conducted with T2 rice seeds confirmed tolerance to fomesafen applied pre-emergence. In agar medium, root growth of WT …

Impact Of Invasive Insects On Native Insect Communities, Taiadjana M. Fortuna, Philippe Le Gall, Samir Mezdour, Paul André Calatayud

All Peer-Reviewed Publications

Several biophysical factors are leading to the loss of biodiversity, among them the dominance of exotic invasive species on native communities is important. Their dominance can lead to changes in the structure of insect communities, by competing and displacing native species to other crops or habitats. These changes can impact the herbivore's natural enemies in invaded areas by diverging them from suitable herbivores and altering their biological control process. The development of edible insects and derived products at an industrial scale can also have an impact on the local fauna by the risks of spillover and accidental release in nature. …

Harnessing Data Science To Improve Integrated Management Of Invasive Pest Species Across Africa: An Application To Fall Armyworm (Spodoptera Frugiperda) (J.E. Smith) (Lepidoptera: Noctuidae), Ritter A. Guimapi, Saliou Niassy, Bester Tawona Mudereri, Elfatih M. Abdel-Rahman, Ghislain T. Tepa-Yotto, Sevgan Subramanian, Samira A. Mohamed, Karl H. Thunes, Emily Kimathi, Komi Mensah Agboka, Manuele Tamò, Jean Claude Rwaburindi, Buyung Hadi, Maged Elkahky, May Guri Sæthre, Yeneneh Belayneh, Sunday Ekesi, Segenet Kelemu, Henri E.Z. Tonnang

All Peer-Reviewed Publications

After five years of its first report on the African continent, Fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) is considered a major threat to maize, sorghum, and millet production in sub-Saharan Africa. Despite the rigorous work already conducted to reduce FAW prevalence, the dynamics and invasion mechanisms of FAW in Africa are still poorly understood. This study applied interdisciplinary tools, analytics, and algorithms on a FAW dataset with a spatial lens to provide insights and project the intensity of FAW infestation across Africa. The data collected between January 2018 and December 2020 in selected locations were matched with the monthly …

Identification Of Candidate Genes And Genomic Selection For Seed Protein In Soybean Breeding Pipeline, Jun Qin, Fengmin Wang, Qingsong Zhao, Ainong Shi, Tiantian Zhao, Qijian Song, Waltram Ravelombola, Hongzhou An, Long Yan, Chunyan Yang, Mengchen Zhang

Horticulture Faculty Publications and Presentations

Soybean is a primary meal protein for human consumption, poultry, and livestock feed. In this study, quantitative trait locus (QTL) controlling protein content was explored via genome-wide association studies (GWAS) and linkage mapping approaches based on 284 soybean accessions and 180 recombinant inbred lines (RILs), respectively, which were evaluated for protein content for 4 years. A total of 22 single nucleotide polymorphisms (SNPs) associated with protein content were detected using mixed linear model (MLM) and general linear model (GLM) methods in Tassel and 5 QTLs using Bayesian interval mapping (IM), single-trait multiple interval mapping (SMIM), single-trait composite interval mapping maximum …

Smokejumper Obituary: Cummings, Robert Neil (Cave Junction 1948), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Clinkingbeard, James Ray (Missoula 1949), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Conklin, Robert Paul (Missoula 1953), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Smokejumper Obituary: Corbet, Mark R. (La Grande 1974), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Signature Peptide Identification For Body Fluids In Sexual Assault Cases By Liquid Chromatography Tandem Mass Spectrometry (Lc-Ms/Ms), Kelci Somers

Student Theses

Body fluids contain proteins that perform functions specific to different types of body fluids. Therefore, the detection of signature peptides for these proteins can potentially identify a body fluid in a forensic investigation. This project aimed to validate a method to detect signature peptides in body fluids commonly found in sexual assault cases by LC-MS/MS. Signature peptides for semen and saliva fluids were combined with two signature peptides for vaginal fluids. Samples created using two donors each for saliva, semen, and vaginal fluids were extracted using a trypsin digest, with separation of the protein and DNA fractions. The LC-MS/MS was …

Water Quality, Carrier Volume And Droplet Size Effects On Herbicide Efficacy And Drift Potential, Barbara Houston

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Herbicide performance is directly related to the amount of active ingredient that has been deposited on the plant. Hence, spray solution characteristics and application parameters are crucial in determining the efficacy of an herbicide application. To maximize the effectiveness of chemical control, methods to deliver full chemical dose must be utilized: allowing the active ingredient to be readily absorbed once added to the carrier and mitigating off-target movement and low herbicide doses. Water is the most frequently used carrier in herbicide applications. Chemical parameters, such as water hardness and pH, can have a critical role in herbicide performance. It is …

Subscription And Organization Information (June 2022)

Nebraska Bird Review

The Nebraska Bird Review is published quarterly by the Nebraska Ornithologists’ Union, Inc., as its official journal, and is sent to members not in arrears of dues. Annual subscription rates (on a calendar-year basis only): $25 in the United States and $35 in all other countries, payable in advance. Single copies are $7 each, postpaid, in the United States and $9 elsewhere. Send orders for back issues to Anita Breckbill, NOU Librarian, c/o Music Library, WMB 30, University of Nebraska, Lincoln, NE 68588-0101 (or at the email address listed below). Memberships in the NOU (on a calendar-year basis only): Active …

Rare Dark American Kestrel – Melanistic Or Sooty?, Joseph A. Gubanyi, Joel Rathe, Camden Sesna

Nebraska Bird Review

On April 13 in Seward County, we noticed a dark bird flying relatively low over fields east of Seward near 224th and Bluff Rd. Initially, because of its size, dark coloration and pointed wingtips, we were unsure of its identification and followed the bird to get better looks and identify it. We were able to observe and photograph the bird perched (Figure 1). We also observed the bird hovering and diving to the ground multiple times in search of prey. After better looks, based on size, wing shape, hooked beak, claws, and behavior (repeated hovering over field), we concluded the …

The Nebraska Bird Review Volume 90 Number 2, June 2022

Nebraska Bird Review

Spring Field Report, March - May 2022, by W. Ross Silcock ….46

Rare Dark American Kestrel – Melanistic or Sooty?, by Joseph Gubanyi, Joel Rathe, Camden Sesna …. 71

Remembering Rosalind Morris …. 76

Remembering Lanny Randolph by William Flack … 77

NOU Spring field Days and Annual Meeting in Gering, May 20-22, 2022 ….78

Subscription and Organization Information …. 87

High Pressure Processing Of Cashew Milk, Rachel Coggins

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Plant-based foods are becoming increasingly popular because of changing consumer preferences. Most plant-based milks are not a direct replacement for cow’s milk because they do not have the same nutritional value and physicochemical properties. However, these properties could be modified and enhanced through processing. For example, high pressure processing (HPP) can affect irreversibly protein structure and functionality and potentially enhance enzymatic hydrolysis. HPP is used widely in the beverage industry for cold pasteurization. In this study, the effects of HPP treatment on (a) the inactivation of Listeria innocua, a commonly used surrogate for Listeria monocytogenes in HPP research, in …

Educating With Captain America: Metabolic And Nutritional Considerations, Ffion Price, Johneric William Smith, Stanley P. Brown

Publications

Captain America can bring more than entertainment value to the public. The pop icon can also be used effectively in the science classroom, encouraging students to more effectively learn the content. How Captain America uses nutrients and how often he eats are novel ways to communicate real science. The point is to make a connection using science to explain how the superhero can run faster, jump higher, or lift more than is humanly possible. In this way fun, teachable moments are available for the educator.

From Impacts To Dependencies: A First Global Assessment Of Corporate Biodiversity Risk Exposure And Responses, Sergio Henrique Collaço De Carvalho, Theodor Florian Cojoianu, Francisco Ascui

Research Collection College of Integrative Studies

There is growing awareness that biodiversity loss poses a significant risk to the global economy, but a lack of clarity on what this means for corporations, and how they are responding. This study provides a first quantitative assessment of biodiversity risk exposure across the world's largest listed companies, compared with their adoption of biodiversity policies, through analysis of disclosures from a sample of 11,812 companies from 2004 to 2018. We find that companies have started responding strategically to biodiversity risk, with 29% having adopted a biodiversity policy by 2018. However, around $7.2 trillion of total enterprise value remains exposed to …

Circadian Disruption Of Hippocampus In An Early Senescence Male Mouse Model, Jennifer A Davis, Jodi R Paul, Mugdha V Mokashi, Stefani A Yates, Daniel J Mount, Hira A Munir, Lacy K Goode, Martin E Young, David B Allison, Karen L Gamble

Children’s Nutrition Research Center Staff Publications

Age-related cognitive decline and disruptions in circadian rhythms are growing problems as the average human life span increases. Multiple strains of the senescence-accelerated mouse (SAM) show reduced life span, and the SAMP8 strain in particular has been well documented to show cognitive deficits in behavior as well as a bimodal pattern of circadian locomotor activity. However, little is known about circadian regulation within the hippocampus of these strains of mice. Here we test the hypothesis that in this early senescence model, disruption of the molecular circadian clock in SAMP8 animals drives disrupted behavior and physiology. We found normal rhythms in …

Fisheries Science Update - Australian Herring - June 2022, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The latest weight of evidence stock assessment for Australian herring indicates that management arrangements introduced in 2015, combined with suitable environmental conditions, have led to the recovery of the resource.

The Department of Primary Industries and Regional Development (DPIRD) tracks our aquatic resources by undertaking weight of evidence stock assessments every three to five years.

DPIRD has undertaken four contemporary weight of evidence stock assessments of Australian herring since 2000.

The 2000 assessment (22 years ago) indicated the catch was sustainable. However, by 2013 the Australian herring stock status had become high risk and ‘unacceptable’, and new measures were introduced. …

Physical Activity Energy Expenditure Predicts Quality Of Life In Ambulatory School-Age Children With Cerebral Palsy, Jinuk Lee, Min-Hwa Suk, Soojin Yoo, Jeong-Yi Kwon

Health & Human Performance Faculty Publications

Background: Participation in physical activities is positively associated with better quality of life in children with cerebral palsy (CP). The objective of this study was to elucidate the relationship between the intensity of habitual physical activity (HPA) measured with an accelerometer and health-related quality of life (HRQOL) in school-age children with CP.

Method: A secondary analysis of the cross-sectional data of 46 ambulatory children with CP was conducted. The participants wore an accelerometer for seven days to measure HPA: activity counts (counts/min) and physical activity energy expenditure (PAEE, kcal/kg/day), as well as %moderate-to-vigorous intensity physical activity (%MVPA), %light intensity physical …

Characterization Of Larval Lepidopteran Gut Stem Cell Markers, Zilan Li

All Theses

The larval lepidopteran midgut is a complex tissue system that shows significant structure-function relationships related to its roles in digestive and absorptive processes. δ-endotoxins (Cry toxins) produced by the bacterium Bacillus thuringiensis disrupt the midgut epithelium of target insects has been used extensively to control pests. However, insects, including several lepidopteran species, evolve resistance to Cry toxins which causes a great threat to their continued utility. Understanding the physiology of the midgut, including that of the stem cells which are responsible for midgut growth, development, and regeneration, may improve the sustainability of midgut-targeted control like Cry toxins. Historically, lepidopteran midgut …

Weakly-Supervised Tumor Purity Prediction From Frozen H&E Stained Slides, Matthew Brendel, Vanesa Getseva, Majd Al Assaad, Michael Sigouros, Alexandros Sigaras, Troy Kane, Pegah Khosravi, Juan Miguel Mosquera, Olivier Elemento, Iman Hajirasouliha

Publications and Research

Background

Estimating tumor purity is especially important in the age of precision medicine. Purity estimates have been shown to be critical for correction of tumor sequencing results, and higher purity samples allow for more accurate interpretations from next-generation sequencing results. Molecular-based purity estimates using computational approaches require sequencing of tumors, which is both time-consuming and expensive.

Methods

Here we propose an approach, weakly-supervised purity (wsPurity), which can accurately quantify tumor purity within a digitally captured hematoxylin and eosin (H&E) stained histological slide, using several types of cancer from The Cancer Genome Atlas (TCGA) as a proof-of-concept.

Findings

Our model predicts …

Utilizing Computational Methods To Study The Biomolecules, Wenhan Guo

Open Access Theses & Dissertations

COVID-19 is increasingly affecting human health and global economy. Understanding the fundamental mechanisms of Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2) is highly demanded to develop treatments for COVID-19. SARS-CoV and SARS-CoV-2 share 92.06% identity in their N protein RBDs' sequences, which results in very similar structures. However, the SARS-CoV-2 is more easily to spread. Utilizing multi-scale computational approaches, this work studied the fundamental mechanisms of the nucleocapsid (N) proteins of SARS-CoV and SARS-CoV-2, including their stabilities and binding strengths with RNAs at different pH values. Electrostatic potential on the surfaces of N proteins show that both the N proteins …

Feed Composition And Isolate Of Histomonas Meleagridis Alter Horizontal Transmission Of Histomonosis In Turkeys. Proof Of Concept, Thaina L. Barros, Christine N. Vuong, Juan D. Latorre, Roberto S. Cuesta, Elizabeth Mcgill, Samuel J. Rochell, Guillermo Tellez-Isaias, Billy Hargis

Poultry Science Faculty Publications and Presentations

Outbreaks of histomonosis in turkeys are typically initiated by the ingestion of contaminated embryonated eggs of Heterakis gallinarum, potentially present in earthworms and mechanical vectors. Once an outbreak is started, infected turkeys can transmit the disease by horizontal transmission. Factors influencing horizontal transmission of histomonosis are poorly understood. Replication of horizontal transmission in experimental conditions has not been consistent, presenting an obstacle in searching for alternatives to prevent or treat the disease. Two pilot experiments and three validation experiments were conducted in the present study. In pilot experiment 1, one isolate of Histomonas meleagridis (named Buford) was used. Turkeys …

Research Note: Virulence Gene Downregulation And Reduced Intestinal Colonization Of Salmonella Enterica Serovar Typhimurium Phl2020 Isolate In Broilers By A Natural Antimicrobial (Neutrapath™), H. Hue, D. Wang, B. M. Hargis, G. Tellez-Isaias

Poultry Science Faculty Publications and Presentations

The reduction in antibiotic growth promoter use in poultry, due to antibiotic resistance concerns, has created a need for natural solutions that control enteric pathogens like Salmonella. One of these natural feed additives, a select blend of essential oils, fatty acids, and an enterosorbent mineral (NeutraPath), was assessed for its effects on the intestinal colonization of Salmonella enterica serovar Typhimurium PHL2020 isolate (ST-PHL2020) in broiler chickens and ST-PHL2020 virulence gene expression. An in vitro digestion model simulating the pH and enzymatic conditions of 3 gastrointestinal compartments (crop, proventriculus, and intestine) was first used to evaluate the antibacterial effects of …

Vaccines Using Clostridium Perfringens Sporulation Proteins Reduce Necrotic Enteritis In Chickens, Ying Fu, Mohit Bansal, Tahrir Jatli Alenezi, Ayidh Almansour, Hong Wang, Xiaolun Sun

Poultry Science Faculty Publications and Presentations

Clostridium perfringens is the prevalent enteric pathogen in humans and animals including chickens, and it remains largely elusive on the mechanism of C. perfringens-induced enteritis because of limited animal models available. In this study, we investigated the role of C. perfringens sporulation proteins as vaccine candidates in chickens to reduce necrotic enteritis (NE). C. perfringens soluble proteins of vegetative cells (CP-super1 and CP-super2) and spores (CP-spor-super1 and CP-spor-super2) were prepared, and cell and chicken experiments were conducted. We found that deoxycholic acid reduced C. perfringens invasion and sporulation using the Eimeria maxima and C. perfringens co-infection necrotic enteritis (NE) …