Life Sciences Commons^™

Elucidating The Relationship Between Self-Reported Disability And Functional Movement In Individuals With Chronic Low Back Pain, Kelsey Ampudia Clark

Theses and Dissertations

INTRODUCTION: Low back pain (LBP) is often exacerbated by movement and, during functional movements, people with LBP tend to inherently modify their posture and movement patterns to avoid aggravating their pain further. Therefore, analysis of spinal movement in people with LBP is necessary and may lead to the identification of movement-based clusters for optimal treatment. PURPOSE: The overall purpose of this study was to investigate how movement patterns in people with chronic LBP relate to their subjective level of pain-related disability. First, we determined which spinal movements best discriminate between people with chronic LBP and asymptomatic controls; second, we ascertained …

Active Consideration Of Health And Nutritional Quality Of Food Choices, Christopher R. Gustafson

Cornhusker Economics

Everyone can be positively influenced by effective interventions promoting healthier food choices. A handful of recent papers have documented positive impacts on dietary quality resulting from interventions that remind people to consider health through prompt messages or subtle priming in supermarkets and in controlled, online experiments. These studies have focused on the impact of reminders on nutritional quality rather than explaining how reminders work. An exception, Arslain, Gustafson, and Rose (2021), collected data on multiple elements of individuals' choice processes to trace the impact of reminders on decisions, showing that reminder messages led people to consider a healthier set of …

The Effects On Soil Fungal Community Of Excluding Select Above-Ground Herbaceous Species In A Montane Longleaf Pine Savanna Restoration Area, Sean Davis

Master of Science in Integrative Biology Theses

Due to anthropogenic pressures, by the 1990s longleaf pine forests were at 3% its peak area. Restoration is difficult as vegetation communities constitute a mosaic across the longleaf range. Hence, vegetation description is important wherever longleaf pine communities exist. Vegetation strongly associates with specific soil fungi operational taxonomic units (OTUs) and description of longleaf pine ecosystems are incomplete without description of microbial taxa.

My goals were to begin describing soil fungal communities of the longleaf pine at Sheffield Wildlife Management Area (SWMA) and describe changes to the fungal community after the removal of dominant plants in a longleaf savanna. I …

Genome Sequence Of Sn1, A Bacteriophage That Infects Sphaerotilus Natans And Pseudomonas Aeruginosa, K.M. Damitha Gunathilake, Denise M. Tremblay, Pier-Luc Plante, Ellen Jensen, Kenneth Nickerson, Sylvain Moineau

Kenneth Nickerson Papers

Phage SN1 infects Sphaerotilus natans and Pseudomonas aeruginosa strains. Its genome consists of 61,858 bp (64.3% GC) and 89 genes, including 32 with predicted functions. SN1 genome is very similar to Pseudomonas phage M6, which contains hypermodified thymidines. Genome analyses revealed similar base-modifying genes as those found in M6.

Phage SN1 was isolated in 1979 from activated sludge samples obtained from a wastewater treatment plant (Lincoln, Nebraska, USA) using S. natans ATCC 13338 as the host (1, 2). An early study showed that the siphophage SN1 has unusual bases in its genome as confirmed by cellulose thin-layer chromatography (1). Its …

Genome Sequence Of Sn1, A Bacteriophage That Infects Sphaerotilus Natans And Pseudomonas Aeruginosa, K.M. Damitha Gunathilake, Denise M. Trembly, Pier-Luc Plante, Ellen C. Jensen, Kenneth W. Nickerson, Sylvian Moineau

School of Biological Sciences: Faculty Publications

Phage SN1 infects Sphaerotilus natans and Pseudomonas aeruginosa strains. Its genome consists of 61,858 bp (64.3% GC) and 89 genes, including 32 with predicted functions. SN1 genome is very similar to Pseudomonas phage M6, which contains hypermodified thymidines. Genome analyses revealed similar base-modifying genes as those found in M6.

A Winning Approach: Teaching Science Communication Skills Through Small-Group Workshops, Serena B. Gumusoglu, Maria Noterman Soulinthavong, Jennifer Barr

Higher Learning Research Communications

Objectives: Research almost always culminates in the communication of findings. Despite the necessity of grant and manuscript writing throughout academic careers, scientific trainees often receive little guided practice in written communication. To fill this gap, we designed, implemented, and evaluated a voluntary writing initiative for biomedical students at a research-intensive (R1) university in the midwestern United States called Writing Initiative in Neuroscience (WIN).

Method: WIN consisted of didactic and workshop components. The didactic component included discussions with topic-specific experts on writing grants and manuscripts for the public and for non-academic scientific careers. The workshop component consisted of small group-based peer …

Robust And Efficient Assessment Of Potency (Reap) As A Quantitative Tool For Dose-Response Curve Estimation, Shouhao Zhou, Xinyi Liu, Xinying Fang, Vernon M Chinchilli, Michael Wang, Nikolay V Dokholyan, J Jack Lee

Faculty, Staff and Student Publications

The median-effect equation has been widely used to describe the dose-response relationship and identify compounds that activate or inhibit specific disease targets in contemporary drug discovery. However, the experimental data often contain extreme responses, which may significantly impair the estimation accuracy and impede valid quantitative assessment in the standard estimation procedure. To improve the quantitative estimation of the dose-response relationship, we introduce a novel approach based on robust beta regression. Substantive simulation studies under various scenarios demonstrate solid evidence that the proposed approach consistently provides robust estimation for the median-effect equation, particularly when there are extreme outcome observations. Moreover, simulation …

Microenvironmental Landscape Of Human Melanoma Brain Metastases In Response To Immune Checkpoint Inhibition, Christopher Alvarez-Breckenridge, Samuel C Markson, Jackson H Stocking, Naema Nayyar, Matt Lastrapes, Albert E Kim, Ashish Dahal, Juliana M Larson, Joana L Mora, Andrew W Navia, Robert H Klein, Benjamin M Kuter, Corey M Gill, Mia Bertalan, Brian Shaw, Alexander Kaplan, Megha Subramanian, Aarushi Jain, Swaminathan Kumar, Husain Danish, Michael White, Osmaan Shahid, Kristen E Pauken, Brian C Miller, Dennie T Frederick, Christine Hebert, Mckenzie Shaw, Maria Martinez-Lage, Matthew Frosch, Nancy Wang, Elizabeth Gerstner, Brian V Nahed, William T Curry, Bob Carter, Daniel P Cahill, Genevieve Marie Boland, Benjamin Izar, Michael A Davies, Arlene H Sharpe, Mario L Suvà, Ryan J Sullivan, Priscilla K Brastianos, Scott L Carter

Faculty, Staff and Student Publications

Melanoma-derived brain metastases (MBM) represent an unmet clinical need because central nervous system progression is frequently an end stage of the disease. Immune checkpoint inhibitors (ICI) provide a clinical opportunity against MBM; however, the MBM tumor microenvironment (TME) has not been fully elucidated in the context of ICI. To dissect unique elements of the MBM TME and correlates of MBM response to ICI, we collected 32 fresh MBM and performed single-cell RNA sequencing of the MBM TME and T-cell receptor clonotyping on T cells from MBM and matched blood and extracranial lesions. We observed myeloid phenotypic heterogeneity in the MBM …

Green Approach For Iron Oxide Nanoparticles Synthesis: Application In Antimicrobial And Anticancer- An Updated Review, Norul Aini Zakariya, Wan Hafizah W. Jusof, Shahnaz Majeed

Karbala International Journal of Modern Science

Cancer and microbial infections create numerous challenges nowadays. Chemotherapy agents cause severe side effects, while microbial infections, especially multidrug-resistant bacterial strains hard to treat with available antibiotics. Therefore, this review provides an overview of the green synthesis of Iron oxide nanoparticles (IONPs) with their physicochemical properties and mechanism of action . The IONPs causes cytotoxicity and antimicrobial activity by causing oxidative distress through the production of Reactive Oxygen Species (ROS). The IONPs as an anticancer and antimicrobial agent may help to overcome the limitation of conventional treatments but needs toxicity evaluation before usage in clinical applications.

A High Yield Method For Protoplast Isolation And Ease Detection Of Rol B And C Genes In The Hairy Roots Of Cauliflower (Brassica Oleracea L.) Inoculated With Agrobacterium Rhizogenes, Qutaiba Shuaib Al-Nema, Ghazwan Qasim Hasan, Omar Abdulazeez Alhamd

Karbala International Journal of Modern Science

Protoplasts represent a unique experimental system for the circulation and formation of genetically modified plants. Here, protoplasts were isolated from genetically modified hairy root tissues of Brassica oleracea L. induced by the Agrobacterium rhizogenes strain (ATCC13332). The concentration of enzyme solutions utilized for protoplast isolation was 1.5 % Cellulase YC and 0.1 % Pectolyase Y23 in 13% mannitol solution, which resulted in high efficiency of isolation within 8 hours, in which the protoplast yield was 2 × 104 cells ml-1 and the percentage of viability was 72%. Each protoplast has one nucleus with a nucleation of 48%. A polymerase chain …

Relationships Of Magnetic Properties And Heavy Metals Content Of Guano In Bat Cave, South Sulawesi, Indonesia, Muhammad Arsyad, Vistarani Arini Tiwow, Meytij Jeanne Rampe, Henny Lieke Rampe

Karbala International Journal of Modern Science

Bat Cave is one of the caves with guano deposits in the Rammang-Rammang karst area, South Sulawesi, Indonesia. The guano deposits can indicate environmental changes in the cave. This study aims to analyze the magnetic properties and correlation between magnetic susceptibility and heavy metal content in guano. Sampling was carried out in Bat Cave, South Sulawesi, Indonesia, and magnetic susceptibility, XRD (mineralogy analysis), and XRF (heavy metal content analysis) were measured. The results showed that the guano sample contained superparamagnetic grains and stable single domain (SP-SSD) measuring -8m³/kg. The location of caves in karst areas and climate change …

Tapioca Starch In The Sol-Gel Synthesis Of Cobalt Ferrites With Divalent Cation Substitutions, Anuchit Hunyek, Chitnarong Sirisathitkul, Krit Koyvanich

Karbala International Journal of Modern Science

An aqueous solution of tapioca starch was successfully used as a chelating agent in the sol-gel synthesis of Co0.7Me0.3Fe2O4, where Me denotes Co, Mn, Cu, Ni, or Zn. The hysteresis loops of all sintered ferrites revealed ferrimagnetic properties. The saturation magnetization was reduced in Co0.7Cu0.3Fe2O4 and Co0.7Ni0.3Fe2O4 because of the ion substitutions with smaller magnetic moments. Interestingly, Co0.7Cu0.3Fe2O4 exhibited the highest saturation magnetization and the lowest coercive field. This result demonstrates the value addition of local agricultural products in controlling nanoparticle formation during sol-gel synthesis.

Investigating The Nuclear Properties Of 162-172 Er Isotopes Using Ibm-1, Sef, And Nee, Amal M. Al-Nuaimi, R.B. Alkhayat, Mushtaq Abed Al-Jubbori

Karbala International Journal of Modern Science

The energy levels of the ground state band (GSB), , and γ-bands for 162-172Er isotopes are calculated in this work by adopting the Interacting Boson Model (IBM-1), the Semi-Empirical Formula (SEF) and the New Empirical Equation (NEE). The GSB, , and γ-bands results revealed that IBM-1, SEF, NEE, and the available experimental data are all in agreement with certain variations. The NEE is more compatible with the experimental data than the IBM-1 and SEF calculations. This study demonstrates that the SEF and NEE equations are able to describe the energy spectra of Er isotopes in comparison to IBM-1. The Er …

Antimicrobial And Cytotoxic Properties Of Extracts From Over-Seasoned Worm-Casts Of The Earthworm Hyperiodrilus Africanus Beddard, 1891, Stephen Olugbemiga Owa, David Adeiza Otohinoyi, Theresa Ibibia Edewor-Ikupoyi, Adeolu Adeola Taiwo, Jenifer Akhere Okosun, Yvonne Oluchi Akujobi, Damilola Grace Oyewale, Tomilola Debby Olaolu, Damilare Emmanuel Rotimi, Osarenkhoe Omorefosa Osemwegie, Oluyomi Stephen Adeyemi

Karbala International Journal of Modern Science

⦁ Background: Despite the continuous interest in the search for therapeutic agents, little attention has been given to the medicinal relevance of earthworm casts, with even less interest in over-seasoned worm-casts. Therefore, this study determined the phytochemical, antimicrobial, and cytotoxic properties of over-seasoned worm-casts of the earthworm Hyperiodrilus africanus (Eudrilidae). Methods: The earthworm casts were extracted with n-hexane, ethanol, and water and the crude extracts were evaluated for the presence of chemical constituents and antimicrobial properties. Cytotoxicity was inferred from the antimitotic effects of the extracts on the radicles of germinating seeds of Sorghum bicolor. Results: The chemical constituent determinations …

A Review On The Ethnobotanical, Phytochemistry, And Pharmacological Activities Of Aristolochia Longa L., Oluwafemi Adeleke Ojo, Matthew Iyobhebhe, Bukola Atunwa, Adebola Busola Ojo

Karbala International Journal of Modern Science

Aristolochia longa L. is a plant native to Algeria and Morocco that has been used by the locals to combat different arrays of infections and diseases found among them. This particular plant is well-known for its therapeutic qualities that could be traced back to the presence of many effective phytochemicals that have been extrapolated from the different parts of the plant, like the leaves and roots: flavonoids, saponins, tannins, 4-hydroxybenzoic acid, β-carotenes, limonenes, and palmitic acids. This plant has been identified in different research articles to be able to manage diseases effectively because it possesses some pharmacological attributes such as; …

Applicability Limits Of The End Face Fiber-Optic Gas Concentration Sensor, Based On Fabry-Perot Interferometer, S.M.R.H. Hussein, A.Zh. Sakhabutdinov, O.G. Morozov, V.I. Anfinogentov, J.A. Tunakova, A.R. Shagidullin, A.A. Kuznetsov, K.A. Lipatnikov, A.R. Nasybullin

Karbala International Journal of Modern Science

The mathematical model of the fiber-optic sensor for gas concentration analysis is under study. The sensor is imple-mented as Fabry-Perot interferometer at the end face of the optical fiber by applying a thin polymer film, which permit-tivity depends on the tested gas concentration. It is shown, that a change in the properties of the optical fiber or the at-mosphere permittivity leads mainly to the spectrum contrast changing and does not change the period and the wave-length shift of its comb. The influence of the polymer film thickness, the environment temperature and humidity on the Fabry-Perot spectrum is analyzed. The necessity …

Molecular Docking Reveals Phytoconstituents Of The Methanol Extract From Muntingia Calabura As Promising Α-Glucosidase Inhibitors, Nurlena Andalia, Muhammad N. Salim, Nurdin Saidi, Muhammad Ridhwan, Muhammad Iqhrammullah, Ummu Balqis

Karbala International Journal of Modern Science

Inhibition of α-glucosidase has been used as a management of type 2 diabetes mellitus, where studies are focused on finding more efficacious and safe drugs. Herein, the research aimed to unveil the potential of phytoconstituents contained in methanol extract of Muntingia calabura leaves in inhibiting α-glucosidase through molecular docking simulation. From a systematic search (Scopus), we found 5 eligible articles and identified 28 phytocompounds. Fisetin, pinostrobin, and rhamnetin identified in M. calabura extract were predicted to have good bioavailability. Finally, fisetin was revealed as the most potential α-glucosidase inhibitor candidate with a binding affinity of -7.5 kcal/mol.

The Benefits Of Growth-Promoting Implants For Beef Cattle, Caleb C. Reichhardt, Reganne K. Briggs, Laura Motsinger, Kara Thornton-Kurth, Matthew D. Garcia

All Current Publications

Growth-promoting implants have been used in the cattle industry for decades. Their benefits allow cattle producers to become more sustainable by decreasing the amount of resources used. Resources such as water and land are decreased when using growth-promoting implants in beef cattle.

A Genomic Investigation Of Divergence Between Tuna Species, Pavel V. Dimens

Dissertations

Effective management and conservation of marine pelagic fishes is heavily dependent on a robust understanding of their population structure, their evolutionary history, and the delineation of appropriate management units. The Yellowfin tuna (Thunnus albacares) and the Blackfin tuna (Thunnus atlanticus) are two exploited epipelagic marine species with overlapping ranges in the tropical and sub-tropical Atlantic Ocean. This work analyzed genome-wide genetic variation of both species in the Atlantic basin to investigate the occurrence of population subdivision and adaptive variation. A de novo assembly of the Blackfin tuna genome was generated using Illumina paired-end sequencing data and …

Acceptance Finds A Way: How To Teach And Use Evolution's Explanatory Power, Daniel George Ferguson

Theses and Dissertations

The theory of evolution is the central combing theory that brings together all the tenets of biology that bring about a solid understanding of life. It is also one of the most controversial scientific theories of all time and is widely rejected by about 40% of the general public in the United States. One of the biggest reasons for low evolution acceptance is the perceived conflict between evolution and religious beliefs. Educators and researchers have been working hard to improve how we teach evolution in the classroom; some methods, such as focusing on evolution knowledge, have shown to be mixed. …

A Checklist Of Parasites Of Peromyscus Maniculatus In North America, John Ubelaker, Gábor R. Rácz

MANTER: Journal of Parasite Biodiversity

This document represents a summary of parasites, in the broadest sense of the term, reported from Peromyscus maniculatus from throughout its range in North America. The document provides data from work ranging from paleontological findings to relatively current reports of parasites and parasitism from P. maniculatus and covers viruses, bacteria sensu lato, protists, helminths, and ectoparasites.

Assessing The Indigenous Arbuscular Mycorrhizal Fungi (Amf) Community Associated With Sea Oats Along The Georgia Coast At Jekyll And Tybee Islands, Kylie Stover

Master of Science in Integrative Biology Theses

Coastal sand dunes are fragile ecosystems that serve as natural defenses to protect the adjacent mainland by absorbing the impacts and energy from severe storms. Different efforts have been taken to restore coastal sand dunes, focusing on foredunes. However, there are many strategies involved with coastal restoration and one superior technique has not been found to be the best. Arbuscular mycorrhizal fungi (AMF) supply a range of limiting nutrients (N, P, Fe, and Zn) to the host plant while improving dune stability. This study aimed to assess and compare the diversity of the indigenous AMF community associated with sea oats …

Muscle And Adipose Tissue Segmentations At The Third Cervical Vertebral Level In Patients With Head And Neck Cancer, Kareem A Wahid, Brennan Olson, Rishab Jain, Aaron J Grossberg, Dina El-Habashy, Vivian Salama, Abdallah S R Mohamed, Renjie He, Joel Jaskari, Jaakko Sahlsten, Kimmo Kaski, Clifton D Fuller, Mohamed A Naser

Faculty, Staff and Student Publications

The accurate determination of sarcopenia is critical for disease management in patients with head and neck cancer (HNC). Quantitative determination of sarcopenia is currently dependent on manually-generated segmentations of skeletal muscle derived from computed tomography (CT) cross-sectional imaging. This has prompted the increasing utilization of machine learning models for automated sarcopenia determination. However, extant datasets currently do not provide the necessary manually-generated skeletal muscle segmentations at the C3 vertebral level needed for building these models. In this data descriptor, a set of 394 HNC patients were selected from The Cancer Imaging Archive, and their skeletal muscle and adipose tissue was …

Legacies Align With Colby’S Acquisition Of Allen And Benner Islands, Bob Keyes

Colby Magazine

The College creates a 500-acre island campus in Muscongus Bay

Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part Xxviii. Scorpions Of Djibouti, František Kovařík, Graeme Lowe

Euscorpius

All scorpion species known from Djibouti are listed, with color photographs and maps of their distribution. Buthus awashensis Kovařík, 2011 known from Ethiopia and Somaliland is reported for the first time from Djibouti. The diagnosis of Orthochirus afar Kovařík & Lowe, 2016 is revised; O. borrii Rossi, 2017 is determined to be a junior synonym of O. afar Kovařík & Lowe, 2016 syn. n.; O. aristidis (Simon, 1882) syn. res. is returned to synonymy with O. olivaceus Karsch, 1881; and O. arenicola Lourenço & Ythier, 2021, is relegated to the status of nomen dubium. Hemiscorpius lipsae sp. n. …

Quantification And Machine Learning Based N2o-N And Co2-C Emissions Predictions From A Decomposing Rye Cover Crop, Deepak R. Joshi, David E. Clay, Sharon A. Clay, Janet Moriles Miller, Aaron L.M. Daigh, Graig Reicks, Shania Westhoff

Agronomy, Horticulture and Plant Science Faculty Publications

Cover crops improve soil health and reduce the risk of soil erosion. However, their impact on the carbon dioxide equivalence (CO2e) is unknown. Therefore, objective of this two-year study was to quantify the effect of cover crop-induced differences in soil moisture, temperature, organic C, and microorganisms on CO2e and to develop machine learning algorithms that predict daily N2O-N and CO2-C emissions. The prediction models tested were multiple linear regression (MLR), partial least square regression (PLSR), support vector machine (SVM), random forest (RF), and artificial neural network (ANN). Models’ performance was accessed using R2 , RMSE and MAE. Rye (secale cereale) …

A Natural Deep Eutectic Solvent - Protonated L-Proline-Xylitol - Based Stationary Phase For Gas Chromatography, Malwina Momotko, Justyna Łuczak, Andrzej Przyjazny, Grzegorz Boczkaj

Natural Sciences Publications

The paper presents a new kind of stationary phase for gas chromatography based on deep eutectic solvents (DES) in the form of a mixture of L-proline (protonated with hydrochloric acid) as a hydrogen bond acceptor (HBA) and xylitol as a hydrogen bond donor (HBD) in a molar ratio of HBA:HBD 5:1. DES immobilized on a silanized chromatographic support was tested by gas chromatography (GC) in order to determine its resolving power for volatile organic compounds. Studies have demonstrated the suitability of this type of DES as a stationary phase for GC. The Rohrschneider-McReynolds constants were determined for the synthesized DES, …

Perturbation Modeling For Molecular Design Of Protein Tyrosine Kinase Inhibitors Using Unsupervised Machine Learning, Keerthi Krishnan

Computational and Data Sciences (MS) Theses

The field of computational drug discovery and development has grown, with the aid of new computational tools for novel molecule discovery. In specific, generative deep learning models have excelled as tools to aid in navigating the large space of known molecules and in the creation of new molecules. These models are fed various representations of molecules as inputs and learn to perform a variety of things, such as the optimization of these molecules towards a targeted property. Ultimately, these generative learning models allow us to build bridges between chemical and continuous spaces to understand the compromise between invoking small incremental …

18s-Nemabase: Curated 18s Rrna Database Of Nematode Sequences, Kaitlin Gattoni, Eli M. S. Gendron, Rebeca Sandoval- Ruiz, Abigail Borgemeier, J. Parr Mcqueen, Rachel M. Shepherd, Dieter Slos, Tom Powers, Dorota L. Porazinska

Department of Plant Pathology: Faculty Publications

Nematodes are the most abundant and diverse animals on the planet but lack representation in biodiversity research. This presents a problem for studying nematode diversity, particularly when molecular tools (i.e., barcoding and metabarcoding) rely on well-populated and curated reference databases, which are absent for nematodes. To improve molecular identification and the assessment of nematode diversity, we created and curated an 18S rRNA database specific to nematodes (18S-NemaBase) using sequences sourced from the most recent publicly available 18S rRNA SILVA v138 database. As part of the curation process, taxonomic strings were standardized to contain a fixed number of taxonomic ranks relevant …

Dual Mechanisms Implemented By Lin-28 For Positive Regulation Of Hbl-1 Are Necessary For Proper Development Of Distinct Tissues In Caenorhabditis Elegans, Madeleine Minutillo

Graduate School of Biomedical Sciences Theses and Dissertations

In Caenorhabditis elegans, the heterochronic pathway is comprised of a hierarchy of genes that control the proper timing of developmental events. hbl-1 (Hunchback Like-1) encodes an Ikaros family zinc-finger transcription factor that promotes the L2 stage cell fate events of the hypodermis. The downregulation ofhbl-1 is a crucial step for the transition from the L2 to the L3 stage. There are two known processes through which negative regulation of hbl-1 occurs: suppression of hbl-1 expression by 3 let-7 miRNAs through the hbl-1 3’UTR and inhibition of HBL-1 activity by LIN-46. The mechanisms by which hbl-1 is positively regulated have not …