Life Sciences Commons^™

The Synapse: Issue 2022

The Synapse: Intercollegiate science magazine

No abstract provided.

Acing Coping Fromw Ace: How Individuals And Communities Can Alleviate The Effects Of Childhood Trauma, Kathy Nguyen

The Synapse: Intercollegiate science magazine

No abstract provided.

The Self-Disorder Model Of Schizophrenia, Sophie Nelson

The Synapse: Intercollegiate science magazine

No abstract provided.

The Hidden Sadness Of Pregnancy: Postpartum Depression And The Effects Of Preventative Medicine, Daniel Etcheberrigaray

The Synapse: Intercollegiate science magazine

No abstract provided.

Featured Artist, Claire Wong

The Synapse: Intercollegiate science magazine

No abstract provided.

Diseases Hidden In Ice: Ancient Bacteria In Permafrost Could Spread Ancient Diseases, Jessica John

The Synapse: Intercollegiate science magazine

No abstract provided.

A Wonderful Fusion: A Mother, A Son, Gravitational Waves, And Our Native People, Abby Tejera

The Synapse: Intercollegiate science magazine

No abstract provided.

Comparison Of Spine–Pelvis Kinematics Variability During Sit-To-Stand And Stand-To-Sit In People With & Without Chronic Low Back Pain: A Vector Coding And Statistical Parametric Mapping Approach, Narges Jangjoo, Elham Alijanpour, Saeid Khodabakhsh, Seyed Sadredin Shojaedin, Roozbeh Naemi

Rehabilitation Sciences Faculty Publications

There is evidence in the literature to suggest that low back pain may change spine–pelvis coordination during activities of daily living. This study aimed to compare the variability of the spine– pelvis coordination during sit-to-stand in people with and without LBP. Ten healthy individuals with a history of LBP and ten individuals without history of LBP participated in this study. Three-dimensional kinematic data of the upper trunk (UT), lower trunk (LT), lower back (LB), and pelvis segments during sit-to-stand and stand-to-sit were recorded using a multi-segmental spine and pelvis models using a motion capture system. The coordination patterns and the …

Advances In 3d Culture Systems For Therapeutic Discovery And Development In Brain Cancer, Janith Wanigasekara, Patrick J. Cullen, Paula Bourke, Brijesh Tiwari, James F. Curtin

Articles

This review focuses on recent advances in 3D culture systems that promise more accurate therapeutic models of the glioblastoma multiforme (GBM) tumor microenvironment (TME), such as the unique anatomical, cellular, and molecular features evident in human GBM. The key components of a GBM TME are outlined, including microbiomes, vasculature, extracellular matrix (ECM), infiltrating parenchymal and peripheral immune cells and molecules, and chemical gradients. 3D culture systems are evaluated against 2D culture systems and in vivo animal models. The main 3D culture techniques available are compared, with an emphasis on identifying key gaps in knowledge for the development of suitable platforms …

Influence Of Si In Maize Plants In Kenyan Populations Of Spodoptera Frugiperda (Lepidoptera: Noctuidae), Ovide Nuambote-Yobila, Boaz Musyoka, Elijah Njuguna, Anani Yaovi Bruce, Fathia Khamis, Sevgan Subramanian, Frédéric Marion-Poll, Paul André Calatayud

All Peer-Reviewed Publications

The fall armyworm (FAW), Spodoptera frugiperda (Lepidoptera: Noctuidae), native to the Americas, was confirmed in West and Central Africa in 2016 and reported in almost all countries of sub-Saharan Africa in 2017, becoming thereafter one of the major constraints on the production of maize, the main staple food crop in the region. Cereals depend on silicon (Si)-based defences to fight off herbivores. Both FAW strains, namely rice and corn strains, have been found to be present in Kenya. The present study tested the influence of Si on larval survival and relative growth rate according to the FAW strain, using potted …

Striving To Be Resilient: The Role Of Crop-Poultry Integrated System As A Climate Change Adaptation Strategy In Semiarid Eastern Kenya, Kelvin Mulungu, Daniel Kangogo

All Peer-Reviewed Publications

Climate change continues to pose significant challenges to food security and livelihoods of smallholder farmers specifically in semi-arid regions. One approach that holds prospects for climate risk management is climate-smart agriculture (CSA). CSA has concentrated on crop practices with little attention to livestock especially indigenous (village) chickens as a potential practice that can be combined with crop agriculture. This study considers the adoption of three CSA practices: improved maize seeds (IS), soil management (SM), indigenous chicken (IC) enterprise and their various combinations. Using survey data collected from 300 farming households in semiarid Kenya, we estimate the impact of integrated crop-poultry …

The Role Of Nitrogen Fixation And Crop N Dynamics On Performance And Legacy Effects Of Maize-Grain Legumes Intercrops On Smallholder Farms In Tanzania, E. Mugi-Ngenga, L. Bastiaans, S. Zingore, N. P.R. Anten, K. E. Giller

All Peer-Reviewed Publications

Maize-grain legume intercrops form an important component of the cropping systems of smallholder farmers in many parts of sub-Saharan Africa. However, the effects of cropping system and fertilizer use on nitrogen fixation and nitrogen uptake of component crops in maize-legume intercrops are not well understood. Our study addressed the questions: (i) What is the capacity of pigeonpea and lablab to fix atmospheric nitrogen (N2) in sole crop and when intercropped with maize on smallholder farms across different agro-ecological conditions?; (ii) How does productivity and N-uptake by sole and intercropped maize and legumes respond to N and P fertilizer?; and (iii) …

Regulation Of Tissue Mechanics And Adherens Junctions By Small Gtpase Rhoa During Drosophila Embryogenesis, Hanqing Guo

Dartmouth College Ph.D Dissertations

Actomyosin contractility plays an important role at both the cell and tissue level during developments. In this study, we developed an optogenetic tool that can acutely inhibit actomyosin contractility by targeting its main activator Rho1. This optogenetic tool can achieve myosin inhibition within one minute and thus enable further dissection of actomyosin function in development. In my first two projects, I used Drosophila mesoderm invagination (also known as ventral furrow formation) as a model to study epithelial folding, a fundamental mechanism for constructing complex 3D tissues. Apical constriction mediated by actomyosin contractility is a common mechanism for epithelial folding. However, …

Development Of A Targeted Mass Spectrometry Method For The Detection And Quantification Of Peanut Protein In Incurred Food Matrices, Sara Schlange

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The unintentional presence of peanut in food products through allergen cross-contact is a considerable safety concern for peanut-allergic individuals. The food industry monitors for this contamination using immunoassays; however, these detection methods demonstrate issues with recovery and accurate quantification of allergenic protein when analyzing processed, complex food matrices. Of particular concern is the deficit in immunoassay-based detection and quantification of peanut in cookie and dark chocolate matrices, as the unintentional presence of peanut has been observed in these food products. A liquid chromatography with tandem mass spectrometry (LC-MS/MS) method for the detection and quantification of peanut protein in cookie and …

Covid-19, Nutrition, And Gender: An Evidence-Informed Approach To Gender-Responsive Policies And Programs, Anna Kalbarczyk, Noora-Lisa Aberman, Bregje S M Van Asperen, Rosemary Morgan, Zulfiqar Ahmed Bhutta, Bianca Carducci, Rebecca Heidkamp, Saskia Osendarp, Neha Kumar, Anna Lartey

Department of Paediatrics and Child Health

In addition to the direct health impacts of COVID-19, government and household mitigation measures have triggered negative indirect economic, educational, and food and health system impacts, hitting low-and middle-income countries the hardest and disproportionately affecting women and girls. We conducted a gender focused analysis on five critical and interwoven crises that have emerged because of the COVID-19 crisis and exacerbated malnutrition and food insecurity. These include restricted mobility and isolation; reduced income; food insecurity; reduced access to essential health and nutrition services; and school closures. Our approach included a theoretical gender analysis, targeted review of the literature, and a visual …

Population Density And Reproductive Seasonality Of Tryonia Cheatumi (Gastropoda: Cochliopidae), The Phantom Tryonia, Kathryn E. Perez, Nina Noreika, Chad Norris, Marty Kelly, Melissa Lopez, Christina Ortega, Salma Ruiz Sandoval, Samantha Gonzalez, Weston Nowlin

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

We studied population density, population size, and reproductive seasonality of the Phantom Tryonia, Tryonia cheatumi (Pilsbry, 1935). This endangered freshwater snail is found only in the San Solomon Spring system, a cienega, or karst-based, arid-land freshwater spring system, in western Texas, USA. We sampled populations at seven locations in the system seasonally over a 2-yr period. San Solomon Spring, the system's largest spring and modified into a swimming pool, had the largest population of T. cheatumi, with an estimated 49 million individuals and a mean density as high as 23,626 ± 39,030 (individuals/m2 ± SD). There were seasonal differences …

Neurodevelopment And Recovery From Wasting, Harriet M. Babikako, Celine Bourdon, Emmie Mbale, Peace Aber, Annet Birabwa, Josephine Chimoyo, Wieger Voskuijl, Zaubina Kazi, John Mukisa, Ali Faisal Saleem

Department of Paediatrics and Child Health

Background and objectives: Acute illness with malnutrition is a common indication for hospitalization among children in low- and middle-income countries. We investigated the association between wasting recovery trajectories and neurodevelopmental outcomes in young children 6 months after hospitalization for an acute illness.
Methods: Children aged 2 to 23 months were enrolled in a prospective observational cohort of the Childhood Acute Illness & Nutrition Network, in Uganda, Malawi, and Pakistan between January 2017 and January 2019. We grouped children on the basis of their wasting recovery trajectories using change in mid-upper arm circumference for age z-score. Neurodevelopment was assessed with the …

Alleviating Hidden Hunger: An Infallible Bridge To Improved Health And Nutrition, Jai K. Das, Zahra Ali Padhani

Department of Paediatrics and Child Health

No abstract provided.

Catalytic Reduction Of Dyes And Antibacterial Activity Of Agnps@Zn@Alginate Composite Aerogel Beads, Fadila Benali, Bouhadjar Boukoussa, Nour El Houda Benkhedouda, Amina Cheddad, Ismail Issam, Jibran Iqbal, Mohammed Hachemaoui, Mohamed Abboud, Adel Mokhtar

All Works

This work focuses on the preparation of aerogel composite beads based on Zn(II)-crosslinked alginate and loaded with different percentages of AgNPs using a simple approach. The obtained samples were evaluated in two different applications: the first application consists in their use as catalysts for the reduction of MB, MO, OG and CR dyes in a simple and binary system under the presence of NaBH4. For this, several parameters affecting the catalytic behavior of these catalysts have been investigated and discussed such as the catalyst mass, AgNPs content, dye nature, and the selectivity of the catalyst in a binary system. The …

Wagin Townsite Borefield: Review Of Aquifer Performance, Rockwater

Natural resources commissioned reports

The Wagin Borefield was established by the Department of Agriculture and Food, Western Australia in 2000-2007 to control groundwater levels in the town that had risen to critical levels as a result of increased recharge and runoff following the clearing of native vegetation for urban development and agriculture. Similar investigations were conducted as part of the Rural Towns Program and Rural Towns-Liquid Assets projects in 41 other wheatbelt towns, but none, except perhaps from Merredin, have been as comprehensively implemented, operated and monitored as Wagin.

The Wagin Borefield comprises 8 production bores, of which only 3 have been operated. To …

Maternal Effects On Growth Parameters Of Chloris Gayana Under Co2 Enrichment, Ahmed Adnan Mohammed Mashli

Theses

Rhodes grass, Chloris gayana, is commonly used forage plant for grazers, livestock, and cattle. It significantly improves soil fertility and its overall structure by preventing nematode flourishment in soil. It is also used as a cover crop to upgrade soil health by reducing soil erosion and increasing water availability. The present study assessed the effects of CO₂ on the growth, development and maternal effects of C. gayana. The experimental setup was made in such a way that the potential impacts of CO₂ can be measured on the eco-physiological growth of C. gayana by studying successive generations. Generation 1 …

Targeted Temperature Management Using Esophageal Cooling, Cedar Morrow Anderson, Christopher Joseph, Rick Fisher, Donald Berry, J Brad Diestelhorst, Marvin Wayne

Faculty, Staff and Student Publications

Although specific temperature targets are debated, targeted temperature management (TTM) is a common treatment for postcardiac arrest patients. However, consistently implementing a TTM protocol is challenging, especially in a community hospital. Often, the protocols described in the literature include labor- and cost-intensive methods that are not feasible or sustainable in many health care settings. Esophageal temperature management (ETM) is a TTM method that can be easily utilized alone or combined with surface methods. We sought to evaluate ETM in a cohort of patients treated with TTM after cardiac arrest. Chart reviews were conducted of all patients treated with ETM after …

Development And Validation Of A Population-Based Anatomical Colorectal Model For Radiation Dosimetry In Late Effects Studies Of Survivors Of Childhood Cancer, Constance A Owens, Bastien Rigaud, Ethan B Ludmir, Aashish C Gupta, Suman Shrestha, Susan A Smith, Stephen F Kry, Choonsik Lee, Tara O Henderson, Gregory T Armstrong, Kristy K Brock, Rebecca M Howell

Faculty, Staff and Student Publications

Purpose: The purposes of this study were to develop and integrate a colorectal model that incorporates anatomical variations of pediatric patients into the age-scalable MD Anderson Late Effects (MDA-LE) computational phantom, and validate the model for pediatric radiation therapy (RT) dose reconstructions.

Methods: Colorectal contours were manually derived from whole-body non-contrast computed tomography (CT) scans of 114 pediatric patients (age range: 2.1-21.6 years, 74 males, 40 females). One contour was used for an anatomical template, 103 for training and 10 for testing. Training contours were used to create a colorectal principal component analysis (PCA)-based statistical shape model (SSM) to extract …

Advances In Understanding Cancer-Associated Neurogenesis And Its Implications On The Neuroimmune Axis In Cancer, Ismail Yaman, Didem Ağaç Çobanoğlu, Tongxin Xie, Yi Ye, Moran Amit

Faculty, Staff and Student Publications

Nerves and immunologic mediators play pivotal roles in body homeostasis by interacting with each other through diverse mechanisms. The spread of nerves in the tumor microenvironment increases tumor cell proliferation and disease progression, and this correlates with poor patient outcomes. The effects of sympathetic and parasympathetic nerves on cancer regulation are being investigated. Recent findings demonstrate the possibility of developing therapeutic strategies that target the tumor microenvironment and its components such as immune cells, neurotransmitters, and extracellular vesicles. Therefore, examining and understanding the mechanisms and pathways associated with the sympathetic and parasympathetic nervous systems, neurotransmitters, cancer-derived mediators and their interactions …

Protein Profiling By Reverse Phase Protein Array (Rppa) In Classical Hairy Cell Leukemia (Hcl) And Hcl-Variant, Fieke W Hoff, Ti'ara L Griffen, Yihua Qiu, Steven M Kornblau

Faculty, Staff and Student Publications

Classical hairy cell leukemia (HCL-c) and HCL variant (HCL-v) are recognized as separate entities with HCL-v having significantly shorter overall survival. Proteomic studies, shown to be prognostic in various forms of leukemia, have not been performed in HCL. We performed reverse phase protein array-based protein profiling with 384 antibodies in HCL-c (

Lessons From The Failure To Complete A Trial Of Denosumab In Women With A Pathogenic Brca1/2 Variant Scheduling Risk-Reducing Salpingo-Oophorectomy, Meghna S Trivedi, Nadir Arber, Eitan Friedman, Judy E Garber, Kevin Holcomb, Jason D Wright, Lana A Vornik, Saba Abutaseh, Tawana Castile, Edward R Sauter, Eileen Dimond, Brandy M Heckman-Stoddard, Margaret House, Goli Samimi, Powel H Brown, Katherine D Crew

Faculty, Staff and Student Publications

Female carriers of pathogenic/likely pathogenic (P/LP) BRCA1/2 variants are at increased risk of developing breast and ovarian cancer. Currently, the only effective strategy for ovarian cancer risk reduction is risk-reducing bilateral salpingo-oophorectomy (RR-BSO), which carries adverse effects related to early menopause. There is ongoing investigation of inhibition of the RANK ligand (RANKL) with denosumab as a means of chemoprevention for breast cancer in carriers of BRCA1 P/LP variants. Through the NCI Division of Cancer Prevention (DCP) Early Phase Clinical Trials Prevention Consortia, a presurgical pilot study of denosumab was developed in premenopausal carriers of P/LP BRCA1/2 variants scheduled for RR-BSO …

Clinical Outcomes And Impact Of Therapeutic Intervention In Patients With Acute Myeloid Leukemia Who Experience Measurable Residual Disease (Mrd) Recurrence Following Mrd-Negative Remission, Nicholas J Short, Walid Macaron, Tapan Kadia, Courtney Dinardo, Ghayas C Issa, Sa Wang, Daniel Nguyen, Aram Bidikian, Keyur P Patel, Sanam Loghavi, Marina Konopleva, Musa Yilmaz, Elias Jabbour, Abhishek Maiti, Hussein A Abbas, Elizabeth Shpall, Uday Popat, Gheath Al-Atrash, Sherry Pierce, Hagop M Kantarjian, Farhad Ravandi

Faculty, Staff and Student Publications

Recurrence of MRD in AML is associated with imminent relapse unless intervened upon. Change in chemotherapy regimen and/or immediate transplant improve outcomes.

Antibody Therapeutics For Epithelial Ovarian Cancer, Mason Ruiz, Ningyan Zhang, Anil K Sood, Zhiqiang An

Faculty, Staff and Student Publications

INTRODUCTION: High-grade serous ovarian carcinoma (HGSC) is an aggressive subtype of epithelial ovarian carcinoma (EOC) and remains the most lethal gynecologic cancer. A lack of effective and tolerable therapeutic options and nonspecific symptoms at presentation with advanced stage of disease are among the challenges in the management of the disease.

AREAS COVERED: An overview of ovarian cancer, followed by a discussion of the current therapeutic regimes and challenges that arise during and after the treatment of EOC. We discuss different formats of antibody therapeutics and their usage in targeting validated targets implicated in ovarian cancer, as well as three emerging …

Identification Of Novel Susceptibility Methylation Loci For Pancreatic Cancer In A Two-Phase Epigenome-Wide Association Study, Ziqiao Wang, Yue Lu, Myriam Fornage, Li Jiao, Jianjun Shen, Peng Wei

Faculty, Staff and Student Publications

The role of DNA methylation and its interplay with gene expression in the susceptibility to pancreatic cancer (PanC) remains largely unexplored. To fill in this gap, we conducted an integrative two-phase epigenome-wide association study (EWAS) of PanC using genomic DNA from 44 cases and 556 controls (20 local controls and 536 public controls in the Framingham Heart Study) in phase 1 and 23 cases and 22 controls in phase 2. We validated the findings using pre-diagnostic blood samples from 13 cases and 26 controls in the Women's Health Initiative (WHI) Study. We further examined gene expression in peripheral leukocytes of …

Image Analysis Reveals Differences In Tumor Multinucleations In Black And White Patients With Human Papillomavirus-Associated Oropharyngeal Squamous Cell Carcinoma, Can F Koyuncu, Reetoja Nag, Cheng Lu, Germán Corredor, Vidya S Viswanathan, Pingfu Fu, Quintin Pan, Zelin Zhang, Jun Xu, Deborah J Chute, Wade L Thorstad, Farhoud Faraji, Justin A Bishop, Mitra Mehrad, Patricia D Castro, Andrew G Sikora, Lester D R Thompson, Rebecca D Chernock, Krystle A Lang Kuhs, Jay K Wasman, Jingqin R Luo, David J Adelstein, Shlomo A Koyfman, James S Lewis, Anant Madabhushi

Faculty, Staff and Student Publications

BACKGROUND: Understanding biological differences between different racial groups of human papillomavirus (HPV)-associated oropharyngeal squamous cell carcinoma (OPSCC) patients, who have differences in terms of incidence, survival, and tumor morphology, can facilitate accurate prognostic biomarkers, which can help develop personalized treatment strategies.

METHODS: This study evaluated whether there were morphologic differences between HPV-associated tumors from Black and White patients in terms of multinucleation index (MuNI), an image analysis-derived metric that measures density of multinucleated tumor cells within epithelial regions on hematoxylin-eosin images and previously has been prognostic in HPV-associated OPSCC patients. In this study, the authors specifically evaluated whether the same …