Life Sciences Commons^™

Immunological Conversion Of Solid Tumours Using A Bispecific Nanobioconjugate For Cancer Immunotherapy, Yifei Lu, Kristin Huntoon, Daeyong Lee, Yifan Wang, Jonghoon Ha, Xuefeng Li, Shiyan Dong, Thomas D Gallup, Minjeong Kang, Hai Zhao, Yi An, Zhaogang Yang, Jing Li, Betty Y S Kim, Wen Jiang

Faculty, Staff and Student Publications

Solid tumours display a limited response to immunotherapies. By contrast, haematological malignancies exhibit significantly higher response rates to immunotherapies as compared with solid tumours. Among several microenvironmental and biological disparities, the differential expression of unique immune regulatory molecules contributes significantly to the interaction of blood cancer cells with immune cells. The self-ligand receptor of the signalling lymphocytic activation molecule family member 7 (SLAMF7), a molecule that is critical in promoting the body's innate immune cells to detect and engulf cancer cells, is expressed nearly exclusively on the cell surface of haematologic tumours, but not on solid ones. Here we show …

Cruise, A Tool For The Detection Of Iterons In Circular Rep-Encoding Single-Stranded Dna Viruses, Adam Jones, George W. Kasun, Joel Stover, Kenneth M. Stedman, Ignacio De La Higuera

Biology Faculty Publications and Presentations

Iterons are short, repeated DNA sequences that are important for the replication of circular single-stranded DNA viruses. No tools that can reliably predict iterons are currently available. The CRUcivirus Iteron SEarch (CRUISE) tool is a computational tool that identifies iteron candidates near stem-loop structures in viral genomes.

Micrornas Contribute To The Host Response To Coxiella Burnetii, Madhur Sachan, Katelynn Brann, Daniel E. Voth, Rahul Raghavan

Biology Faculty Publications and Presentations

MicroRNAs (miRNAs), a class of small non-coding RNAs, are critical to gene regulation in eukaryotes. They are involved in modulating a variety of physiological processes, including the host response to intracellular infections. Little is known about miRNA functions during infection by Coxiella burnetii, the causative agent of human Q fever. This bacterial pathogen establishes a large replicative vacuole within macrophages by manipulating host processes such as apoptosis and autophagy. We investigated miRNA expression in C. burnetii-infected macrophages and identified several miRNAs that were down- or up-regulated during infection. We further explored the functions of miR-143-3p, an miRNA whose …

Global Patterns Of Diversity And Metabolism Of Microbial Communities In Deep‑Sea Hydrothermal Vent Deposits, Zhichao Zhou, Emily St. John, Karthik Anantharaman, Anna-Louise Reysenbach

Biology Faculty Publications and Presentations

When deep-sea hydrothermal fluids mix with cold oxygenated fluids, minerals precipitate out of solution and form hydrothermal deposits. These actively venting deep-sea hydrothermal deposits support a rich diversity of thermophilic microorganisms which are involved in a range of carbon, sulfur, nitrogen, and hydrogen metabolisms. Global patterns of thermophilic microbial diversity in deep-sea hydrothermal ecosystems have illustrated the strong connectivity between geological processes and microbial colonization, but little is known about the genomic diversity and physiological potential of these novel taxa. Here we explore this genomic diversity in 42 metagenomes from four deep-sea hydrothermal vent fields and a deep-sea volcano collected …

Riqueza, Abundancia Relativa Y Actividad De Los Mamíferos De Una Reserva En Restauración En Costa Rica, Pablo Pacheco, Lucia López, Alison Vega Cambronero, José Manuel Mora

Biology Faculty Publications and Presentations

“Richness, relative abundance and activity of medium and large mammals of a reserve under restoration in Costa Rica”. Introduction: Private protected areas are a valuable complement to national systems of protected areas. The Sierra Zapote Reserve in Abangares, Costa Rica, established in 2000, protects 70 ha of advanced secondary forest, regenerating secondary forest and primary riparian forest. It is expected to favor faunal communities, like medium and large mammals, which are among the species most threatened by habitat loss and fragmentation; nevertheless; there is a lack of recent faunal assessments at Sierra Zapote. Objective: To assess the richness, relative abundance …

Intraoperative Localization And Preservation Of Reading In Ventral Occipitotemporal Cortex, Samden D Lhatoo, Nitin Tandon

Faculty, Staff and Student Publications

OBJECTIVE: Resective surgery in language-dominant ventral occipitotemporal cortex (vOTC) carries the risk of causing impairment to reading. Because it is not on the lateral surface, it is not easily accessible for intraoperative mapping, and extensive stimulation mapping can be time-consuming. Here the authors assess the feasibility of using task-based electrocorticography (ECoG) recordings intraoperatively to help guide stimulation mapping of reading in vOTC.

METHODS: In 11 patients undergoing extraoperative, intracranial seizure mapping, the authors recorded induced broadband gamma activation (70-150 Hz) during a visual category localizer. In 2 additional patients, whose pathologies necessitated resections in language-dominant vOTC, task-based functional mapping was …

Distribution And Export Of Particulate Organic Carbon In East Antarctic Coastal Polynyas, Lavenia Ratnarajah, Viena Puigcorbé, Sébastien Moreau, Montserrat Roca-Martí, Julie Janssens, Matthew Corkill, Luis Duprat, Cristina Genovese, Jan Lieser, Pere Masqué, Delphine Lannuzel

Research outputs 2022 to 2026

Polynyas represent regions of enhanced primary production because of the low, or absent, sea-ice cover coupled with the proximity of nutrient sources. However, studies throughout the Southern Ocean suggest elevated primary production does not necessarily result in increased carbon export. Three coastal polynyas in East Antarctica and an off-shelf region were visited during the austral summer from December 2016 to January 2017 to examine the vertical distribution and concentration of particulate organic carbon (POC). Carbon export was also examined using thorium-234 (²³⁴Th) as a proxy at two of the polynyas. Our results show that concentrations and integrated POC …

Integrative Physiology-Coupled Pilot-Centered Flight Simulation, Shawn C. Harrison

Electrical & Computer Engineering Theses & Dissertations

Maintaining the pilot’s physiological performance envelope within the limits of human capabilities may be crucial for avoiding hazardous physiological episodes in fighter aircraft that compromise safety. The main physiological episode of interest is impaired pilot respiration, better known as hypoxia caused by a high fraction of inspired oxygen (FiO₂) at high altitudes and variation in accelerative gravitational forces (g-forces). Integrated into fighter aircraft is an Onboard Oxygen Generating System (OBOGS) developed to mitigate the necessity of gaseous and liquid oxygen cannisters [1]. OBOGS act as a life support in hypoxic environments by providing oxygen-rich air, thereby oxygenating the …

Development And Validation Of A Three-Dimensional Optical Imaging System For Chest Wall Deformity Measurement, Nahom Kidane

Electrical & Computer Engineering Theses & Dissertations

Congenital chest wall deformities (CWD) are malformations of the thoracic cage that become more pronounced during early adolescence. Pectus excavatum (PE) is the most common CWD, characterized by an inward depression of the sternum and adjacent costal cartilage. A cross-sectional computed tomography (CT) image is mainly used to calculate the chest thoracic indices. Physicians use the indices to quantify PE deformity, prescribe surgical or non-surgical therapies, and evaluate treatment outcomes. However, the use of CT is increasingly causing physicians to be concerned about the radiation doses administered to young patients. Furthermore, radiographic indices are an unsafe and expensive method of …

Ncrna-Protein Interaction Prediction Using Language-Based Features, Krishna Shah

LSU New Orleans Theses and Dissertations

Noncoding RNAs (ncRNAs) play a significant role in several fundamental biological processes by binding to RNA-binding proteins (RBPs); hence, it is necessary to study ncRNA-protein interaction (RPI). Several classic and deep-learning machine learning models have been pro-posed to predict RPI. These models first need to collect features of RNA and protein, such as physicochemical properties, secondary and tertiary structure, et cetera, before feeding them into the model. More recently, after the advancement of high throughput sequenc-ing and the improvement in Natural Language Processing (NLP), transformer models like BERT-RBP and Evolutionary Scaling Model (ESM) can be trained to automatically extract feature …

Environmental Sensitivity Of Maternal And Offspring Phenotype In The Green Anole (Anolis Carolinensis) Lizard, Jamie Marks

LSU New Orleans Theses and Dissertations

Animals dynamically invest their acquired energetic resources into fitness-related traits, and life-history trade-offs occur when limited resources are invested in a given trait at the expense of another. The phenotypic effects of life history trade-offs are well documented, but the mechanisms facilitating these trade-offs are poorly understood. One such mechanism is the insulin/insulin-like signaling (IIS) network, and specifically its two primary hormones: insulin-like growth factor 1 (IGF1) and insulin-like growth factor 2 (IGF2). IGF1 is well-characterized but IGF2 is severely understudied, though it is present in nearly all amniotes and sometimes expressed at higher levels than IGF1 in adulthood. I …

The Role Of Akirin/Nurd Interactions During Heart Development, Mia Jones

Symposium of Student Scholars

Congenital heart defects are often identified during pregnancy or infancy and are the most common birth defect presented in humans, affecting blood circulation resultant from small holes in a blood chamber to deformity-inducing missing structures. Recent advancements in medicine have allowed those affected to live healthier, longer lives. Gene combinations and chromosomal changes play pivotal roles in congenital heart defects, but the specific genes involved remain unknown. The Nowak Lab has discovered several novel regulatory proteins that are critical for embryonic heart development and is studying them for a potential link to congenital heart defects.

During embryogenesis, the heart of …

Evaluation Of Differences In Testosterone Concentration Among Species, Sexes, And Reproductive Tactics In Two-Lined Salamanders, Zaynab Massenburg

Symposium of Student Scholars

Fall 2022 symposium abstract:

Evaluation of differences in testosterone concentration among species, sexes, and reproductive tactics in two-lined salamanders

Zaynab Massenburg(1), Michelle Ross(1)

[[email protected], [email protected]]

(1) Kennesaw State University

Inhabiting streams in the Appalachian Mountains in northern Georgia are two sympatric and closely related species of plethodontid salamanders—Brown-backed Salamanders (Eurycea aquatica) and Blue Ridge Two-lined Salamanders (Eurycea cf. wilderae). Male Eurycea cf. wilderae exhibit a morphological polymorphism corresponding to alternative reproductive tactics. “Searching” males display brighter coloration, the presence of cirri and a mental glad, and mate-searching behavior, while “guarding” males display hypertrophied jaw musculature, lack cirri and a mental …

Analyzing The Past Five Years Of Equinox Week* Programs Focused On Sustainable Development Goals Within A Collection Of Local And Global Initiatives To Support A Proposal For The Publication Of A Comprehensive Book, Abdoulaye Idrissa

Symposium of Student Scholars

Many undergraduate students are not familiar with the research process involved in a book publication proposal. Through this multidisciplinary collaborative research, the faculty intends to minimize this gap by engaging the students in such a process from the early phase of proposal preparation. The student will research and review the past five years of EQUINOX Week* programs focused on Sustainable Development Goals within a collection of local and global initiatives to support a proposal for the EQUINOX proceeding publication.

With an extensive set of qualitative and quantitative data gathered over a span of 5 years. The student will be …

Exploring Stress Mindset And Perceived Stress Between College Student-Athletes And Non-Athletes, Creighton Avery, Amber M. Shipherd, Sarah Gomez, Kelly B. Renner

International Journal of Exercise Science

International Journal of Exercise Science 15(5): 1554-1562, 2022. One’s beliefs about the nature of stress (e.g., stress mindset) play a large role in the extent to which one experiences the detrimental or beneficial outcomes of stress. Stress mindset has been explored in college students, but there is limited research on stress mindsets in student-athletes. Sport can serve as a buffer to the negative impacts of stress for some student-athletes; however, pressures associated with sport participation increase stress in other student-athletes. Therefore, the purpose was to examine potential differences in stress mindset and perceived stress between non-athletes and college student-athletes. We …

Studying Changes And Addressing The Effects Of The Covid-19 Pandemic On Restaurants, Nael Mohamed Nabil Alsarrag

BAU Journal - Creative Sustainable Development

Several everyday activities were majorly affected by the COVID-19 pandemic, adapting these activities to become safe for people to perform and become "covid-friendly" required many studies. Dining out in restaurants was one of the major activities that were affected by this pandemic. Permanently or partially closed, restaurants adapted quickly to sidewalk pickups, and excessive delivery demand, and accordingly, their menus and even the staffing were shortened. Several months later, the foodservice industry was one of the first to move a step forward against coronavirus and positively adapt by coming up with creative and innovative ways to be able to re-open …

Architectural Representations Of Human Rights, El-Bastawissi Y. Ibtihal, Youssef Maged

BAU Journal - Creative Sustainable Development

The United Nations defines the Human Rights as the rights of all human beings, regardless of race, gender, language, religion, nationality, or any other status. These rights include all claims to live freely, to educate and work in equality, and to inhabit humanistic urban and architectural spaces. Throughout the history of architecture, civilisations have generated different perspectives towards respecting the human rights. Temples of Ancient Egyptian Architecture crushed the human scale to introduce religious experiences to their visitors. Tibetan temples over mountains enforced people to make anti-humanistic journeys to reach them. After thousands of years, the mega-scale palaces and cathedrals …

Mora De Castilla: Cadena De Valor Para Contribuir A La Competitividad De La Provincia Del Sumapaz En Cundinamarca (Colombia, Nelson Enrique Fonseca Carreño

Ciencias Administrativas, Económicas y Contables

La cadena de valor es un instrumento utilizado en las empresas que consiste en analizar las actividades presentes en el ciclo productivo de un producto, con el propósito de identificar fuentes de ventaja competitiva. Bajo esta premisa, esta investigación pretende diagnosticar, caracterizar y diseñar la cadena de valor de la mora de Castilla (Rubus claucus) en la provincia de Sumapaz, Cundinamarca, a través de metodologías de diagnóstico. Se tuvo en cuenta el Modelo de desarrollo agroempresarial de la Cámara de Comercio de Bogotá (CCB), el cual identifica, caracteriza y define las necesidades de todos los agronegocios involucrados en la cadena …

Motociclistas Y Accidentalidad. Una Mirada Desde La Perspectiva Cultural, Juan Manuel Andrade Navia, Miguel Ángel Mahecha Bermúdez, Dagoberto Páramo Morales, Elías Ramírez Plazas

Ciencias Administrativas, Económicas y Contables

Las principales causas de accidentes de tránsito en el 2020 estaban asociadas al comportamiento humano de los actores en la vía, siendo las principales: conducir con exceso de velocidad (40,1%); no respetar las normas de tránsito (28,9 %); conducir en estado de embriaguez (9,7 %); y la violación de las normas de tránsito por los peatones (9,2 %). La ANSV en 2016 recordó un dato preocupante: el 53 % de las personas fallecidas eran motociclistas y el 55 % de los lesionados se encuentran entre 20 y 34 años, es decir, en la edad más productiva para la economía nacional. …

Arch Rock (Width In Millimeters), Peter G. Butterfield, Ryan W. Mcewan

Data Files: White Oaks in Vinton Furnace Experimental Forest

Data in this collection regards white oak trees (Quercus alba) in Vinton Furnace Experimental Forest, Vinton County, Ohio. Affiliated images are available at http://ecommons.udayton.edu/mcewanlab_6_images.

File type: .csv

About the data:

• Column A: Year
• Column B and onward: Measurements of tree rings in millimeters; sample title appears in row 1
• Measurements taken using a Velmex Unislide and the Tellervo software application.

Cartilla Pedagógica De Primera Infancia Y Recreación, Maximiliano Quintero Reina, Carlos Alberto Romero Cuestas

Ciencias del Deporte y la Educación Física

La Cartilla Pedagógica de Primera Infancia y Recreación Tomo 1, surge como producto del proyecto de investigación “Aplicación móvil para estimulación psicomotriz, reducción de hábitos de sedentarismo en la primera infancia, municipios de Fusagasugá Colombia, Muzambinho Brasil” el cual es diseñado a partir de la realidad observada en la atención de los niños y niñas de los Hogares Comunitarios de Bienestar Tradicionales que operan en Fusagasugá.

Lo anterior es posible desde la interacción con las madres comunitarias del municipio, el aporte de los estudiantes de la licenciatura en educación básica con énfasis en educación física, recreación y deportes de la …

A Common Mechanism Links Epstein‐Barr Virus Infections And Autoimmune Diseases, Luwen Zhang

Nebraska Center for Virology: Faculty Publications

Epstein‐Barr virus (EBV) infection is associated with a variety of the autoimmune diseases. There is apparently no unified model for the role of EBV in autoimmune diseases. In this article, the development of autoimmune diseases is proposed as a simple two‐step process: specific autoimmune initiators may cause irreversible changes to genetic materials that increase autoimmune risks, and autoimmune promoters promote autoimmune disease formation once cells are susceptible to autoimmunity. EBV has several types of latencies including type III latency with higher proliferation potential. EBV could serve as autoimmune initiators for some autoimmune diseases. At the same time, EBV may play …

Wics Conference 2022: Driving Research, Teaching, And Extension Impact, Daren Redfearn, Daran Rudnick

Water and Integrated Cropping Systems Conferences

The Water and Integrated Cropping Systems (WICS) Hub was established to facilitate and provide collaborative opportunities for IANR faculty to leverage their individual and collective knowledge, talents, and interests to drive impact in Research and Discovery, Teaching and Learning, Extension and Outreach. This past year we focused on building connections as well as identifying and prioritizing big challenges and opportunities facing Nebraskans. The faculty identified and organized around the following themes, Digital/Precision Agriculture, Soil Health, Integrated Cropping Systems, Water Quality, and Water Quantity. The Theme Groups are faculty led and multi-disciplinary with representation across IANR Departments and Faculty appointments. We …

Sequencing And Assembling Bear Genomes: The Bare Necessities., Courtney Willey, Ron Korstanje

Faculty Research 2022

Unique genetic adaptations are present in bears of every species across the world. From (nearly) shutting down important organs during hibernation to preventing harm from lifestyles that could easily cause metabolic diseases in humans, bears may hold the answer to various human ailments. However, only a few of these unique traits are currently being investigated at the molecular level, partly because of the lack of necessary tools. One of these tools is well-annotated genome assemblies from the different, extant bear species. These reference genomes are needed to allow us to identify differences in genetic variants, isoforms, gene expression, and genomic …

Evaluation Of The Effects Of Pine-Sourced Biochar On Cattle Performance And Methane And Carbon Dioxide Production From Growing And Finishing Steers, J. L. Sperber, B. C. Troyer, Galen E. Erickson, Andrea K. Watson

Department of Animal Science: Faculty Publications

A feedlot growing (77-d) and finishing (111-d) experiment was conducted to evaluate the effects of feeding biochar on steer performance, methane and carbon dioxide emissions, and carcass characteristics. Two treatments were evaluated, a control diet without biochar and the same diet with biochar included at 0.8% of dietary DM (growing) or 1.0% of dietary DM (finishing). The growing diet consisted of 40% corn silage, 40% wheat straw, 15% modified distillers grains plus solubles, and 5% supplement, with 0.8% biochar replacing fine ground corn in supplement. The finishing diet consisted of 55% high-moisture corn (HMC), 35% Sweet Bran, 5% wheat straw, …

Analyzing Interactions Of Calmodulin With Hiv-1 Matrix Protein, Andrea Sandoval, D. Mau, N. Karimi, K. Sakamaki, C. Owens, Jerry Larue

Student Scholar Symposium Abstracts and Posters

Human immunodeficiency virus (HIV) attacks the immune system and if left untreated, could cause acquired immunodeficiency syndrome (AIDS). The HIV matrix protein (HIV-MA) is involved in replication and regulation of the HIV virus. Calmodulin (CaM), a calcium-binding protein found in all eukaryotes, has a potential role in the viral replication of HIV-MA which plays a key role in the replication of HIV. In order to investigate the interactions between calmodulin and the HIV-MA, a series of titrations with CaM are performed using circular dichroism. Circular dichroism (CD) uses circularly polarized light to observe the secondary structure of a molecule. The …

The Effects Of Deleting Lrb E3 Ligase Region 2 On Red Light Responses In Arabidopsis Thaliana, Sabina Liskey

Masters Theses

The ability of plants to absorb light through photoreceptors is essential for successful plant development. Phytochromes are important plant photoreceptors that detect and absorb red and far-red light and must function properly for plant survival. The Light Response BTB proteins (LRB) play an important role in a plant’s response to red light by degrading phytochrome B (PhyB) via the ubiquitin proteasome system (UPS). Although there has been a successful investigation into understanding the function of the LRBs, the function of a few regions within LRB proteins remains unknown, including a portion located on the N-terminal end of the protein, termed …

Reference Genome Coverage Based Approach For Whole Shotgun Metagenomic Analysis, Daniel Asare Acheampong

Theses and Dissertations

Advancement in metagenomic sequencing technologies have led to a tremendous improvement in public health through the identification of microbial organisms in their natural environment and the role they play. Developments in second and third generation sequencing technologies have contributed immensely to the increase in prokaryotic and eukaryotic reference genomes. Alignment of metagenomic reads to all these reference genomes in the quest to identify the microbial organism present in the sample could be computationally expensive and time consuming, thus the need for a more quick and accurate taxonomic classifiers that can aid in the fast identification of these organisms. Construction of …

Importance Of Good Communications For Generational Ag Business Transfers, Allan Vyhnalek

Cornhusker Economics

Adapted from Right Risk, volume 10, Issue 10, October 2022.

Effective communication within a farm or ranch family, especially when multiple generations are operating and managing the business, is the underpinning of all other decisions made in a family business. It is critical that farm and ranch families identify areas of contention and develop communication skills that will allow them to negotiate satisfying outcomes. This may involve basic skills training, including communication, problem solving, and decision making.

Coordinates Of Each Sample, Peter G. Butterfield, Ryan W. Mcewan

Data Files: White Oaks in Vinton Furnace Experimental Forest

Data in this collection regards white oak trees (Quercus alba) in Vinton Furnace Experimental Forest, Vinton County, Ohio. Affiliated images are available at http://ecommons.udayton.edu/mcewanlab_6_images.

File type: .csv

About the data:

• Column A: Year
• Column B and onward: Measurements of tree rings in millimeters; sample title appears in row 1
• Measurements taken using a Velmex Unislide and the Tellervo software application.