Life Sciences Commons^™

Mahi Mahi (Coryphaena Hippurus) Neurocranium, Logan Exton, David William Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 13.335 cm total length (TL) Mahi Mahi (Coryphaena hippurus), collected from Fort Lauderdale on 04/11/2022 by Logan Exton

Natural Coevolution Of Tumor And Immunoenvironment In Glioblastoma., Lingxiang Wu, Wei Wu, Junxia Zhang, Zheng Zhao, Liangyu Li, Mengyan Zhu, Min Wu, Fan Wu, Fengqi Zhou, Yuxin Du, Rui-Chao Chai, Wei Zhang, Xiaoguang Qiu, Quanzhong Liu, Ziyu Wang, Jie Li, Kening Li, Apeng Chen, Yinan Jiang, Xiangwei Xiao, Han Zou, Rashmi Srivastava, Tingting Zhang, Yun Cai, Yuan Liang, Bin Huang, Ruohan Zhang, Fan Lin, Lang Hu, Xiuxing Wang, Xu Qian, Sali Lv, Baoli Hu, Siyuan Zheng, Zhibin Hu, Hongbing Shen, Yongping You, Roel G W Verhaak, Tao Jiang, Qianghu Wang

Faculty Research 2022

Isocitrate dehydrogenase (IDH) wild-type glioblastoma (GBM) has a dismal prognosis. A better understanding of tumor evolution holds the key to developing more effective treatment. Here we study GBM's natural evolutionary trajectory by using rare multifocal samples. We sequenced 61,062 single cells from eight multifocal IDH wild-type primary GBMs and defined a natural evolution signature (NES) of the tumor. We show that the NES significantly associates with the activation of transcription factors that regulate brain development, including MYBL2 and FOSL2. Hypoxia is involved in inducing NES transition potentially via activation of the HIF1A-FOSL2 axis. High-NES tumor cells could recruit and polarize …

Little Tunny, Euthynnus Alletteratus, Neurocranium, Andrew C. Kuntz, Kylie Bosket, Amy Hirons

Hirons Field Techniques

Neurocranium from Little Tunny, Euthynnus alletteratus. Sample belongs to David Kerstetter.

Distinct Tumor Necrosis Factor Alpha Receptors Dictate Stem Cell Fitness Versus Lineage Output In Dnmt3a-Mutant Clonal Hematopoiesis., Jennifer M. Sanmiguel, Elizabeth Eudy, Matthew A. Loberg, Kira Young, Jayna J. Mistry, Kristina D. Mujica, Logan S. Schwartz, Timothy M. Stearns, Grant A Challen, Jennifer J. Trowbridge

Faculty Research 2022

Clonal hematopoiesis resulting from the enhanced fitness of mutant hematopoietic stem cells (HSC) associates with both favorable and unfavorable health outcomes related to the types of mature mutant blood cells produced, but how this lineage output is regulated is unclear. Using a mouse model of a clonal hematopoiesis-associated mutation, DNMT3AR882/+ (Dnmt3aR878H/+), we found that aging-induced TNFα signaling promoted the selective advantage of mutant HSCs and stimulated the production of mutant B lymphoid cells. The genetic loss of the TNFα receptor TNFR1 ablated the selective advantage of mutant HSCs without altering their lineage output, whereas the loss of TNFR2 resulted in …

Taxonomic Assessment Of Two Wild House Mouse Subspecies Using Whole-Genome Sequencing., Raman Akinyanju Lawal, Verity L Mathis, Mary Barter, Jeremy R. Charette, Alexis Garretson, Beth L Dumont

Faculty Research 2022

The house mouse species complex (Mus musculus) is comprised of three primary subspecies. A large number of secondary subspecies have also been suggested on the basis of divergent morphology and molecular variation at limited numbers of markers. While the phylogenetic relationships among the primary M. musculus subspecies are well-defined, relationships among secondary subspecies and between secondary and primary subspecies remain less clear. Here, we integrate de novo genome sequencing of museum-stored specimens of house mice from one secondary subspecies (M. m. bactrianus) and publicly available genome sequences of house mice previously characterized as M. m. helgolandicus, with whole genome sequences …

On The Firefly (Coleoptera: Lampyridae) Species Of Carl Linnaeus, Oliver Keller

Insecta Mundi

The firefly species described by Carl Linnaeus in 1758 and 1767 (Coleoptera: Lampyridae) were checked to determine the actual dates of publication. Nine out of twelve species were originally described in 1758 and not in 1767 as published in the majority of firefly literature. Lampyris hespera Linnaeus, 1767 as a junior synonym of Aspisoma lampyris (Linnaeus, 1758) is established.

Se revisaron las especies de luciérnagas descritas por Carl Linnaeus in 1758 y 1767 (Coleoptera: Lampyridae) para la determinación de fechas de publicación. Nueve de las doce especies fueron originalmente descritas en 1758 y no en 1767 como aparece publicado en …

New Distributional Records For Mexican Cleridae (Coleoptera) With The Description Of Three New Species, Jacques Rifkind

Insecta Mundi

New state records for 32 species of Mexican Cleridae (Coleoptera) are presented. In addition, 10 species of Cleridae are reported for Mexico for the first time (new country records). Cymatodera bezarki new species and Enoclerus sepultura new species are described from Chiapas, Mexico. Enoclerus primulus new species is described from Chiapas, Mexico and El Salvador.

Approximately 550 species of Cleridae are known from Mexico. These are divided among approximately 63 gen­era, of which the most speciose are Cymatodera Gray (ca. 110 species), Enoclerus Gahan (ca. 105 species) and Phyllobaenus Dejean (ca. 40 species). Faunistic studies are limited to Vaurie’s (1952) …

Vitamin D3 Status And The Cardiovascular Response To Head Down Flexion In Healthy Adults, Justin Pascual

Theses - ALL

Objectives: The primary aim of this study was to elucidate relationships linking vitamin Dconsumption and the vestibulo-sympathetic reflex (VSR) by exploring the associations between self-reported vitamin D consumption and the cardiovascular responses to head-down flexion (HDF), a maneuver known to activate the vestibulo-sympathetic response. Background: During orthostasis, the body attempts to maintain cerebral blood flow, thereby avoiding syncope. Orthostatic intolerance, the inability to withstand postural changes, occurs when cardiac output is not maintained during orthostasis and is highlighted by symptoms including lightheadedness, impaired cognition, loss of balance, low blood pressure, and syncope. The cardiovascular and vestibular systems work in tandem …

Antimicrobial Efficacy Of A Citric Acid/Hydrochloric Acid Blend, Peroxyacetic Acid, And Sulfuric Acid Against Salmonella On Inoculated Non-Conventional Raw Chicken Products, Emma Nakimera

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The utilization of non-conventional chicken parts as human food varies widely across countries. The high prevalence of Salmonella, especially in the giblets, poses a high risk to public health. Poultry processors have implemented multiple hurdle technology to reduce this gram-negative pathogen in chicken parts. This study was conducted to evaluate the antimicrobial efficacy of a commercial blend of citric acid/ hydrochloric acid (CP), peroxyacetic acid (PAA), and sulfuric acid (SA) in reducing Salmonella inoculated on two chicken giblets: livers and hearts. Chicken hearts and livers were inoculated (6 log CFU/ml of rinsate) by individually immersing them in a cocktail …

Toro (Priacanthus Arenatus) Neurocranium, Nicole Mozer, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 7.8 cm

Toro - Priacanthus arenatus

Collected from Kerstetter Fisheries & Avian Ecology Lab on 9/21/2022 by Nicole Mozer & David Kerstetter

2022 - The Third Annual Fall Symposium Of Student Scholars

Symposium of Student Scholars Program Books

The full program book from the Fall 2022 Symposium of Student Scholars, held on November 17, 2022. Includes abstracts from the presentations and posters.

Crustacean Assemblage Structure Over The Charlie-Gibbs Fracture Zone Of The Mid-Atlantic Ridge Collected During The 2009 Henry B. Bigelow Expedition, Kathryn Medina

All HCAS Student Capstones, Theses, and Dissertations

The Charlie Gibbs Fracture Zone (CGFZ) consists of two nearly parallel fracture transform faults that intersect the Mid-Atlantic Ridge (MAR) axis. This area has high primary productivity and biomass levels due to the topography and water. A predominant hydrographic feature of the MAR is the Sub-Polar Front (SPF) which runs along the southern edge of the CGFZ and is known as a biogeographical boundary for multiple species. As part of The Census of Marine Life project Patterns and Processes of the Ecosystem of the northern Mid-Atlantic (MAR-ECO), this study analyzed the abundance and distribution patterns of the CGFZ crustacean community …

Scamp Grouper, (Mycteroperca Phenax) Neurocranium, Liam L. Wilcox, David William Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Neurocranium from 5.40 cm; total length unknown. Scamp Grouper, (Mycteroperca phenax)

Specimen received from Kerstetter's lab

Wrack Lines Volume 22, Number 2, Fall-Winter 2022-2023, Nancy C. Balcom, Juliana Barrett, Judy Benson, Ben Crnic, Sto Len

Wrack Lines

With the theme, "Looking Ahead: People and Projects Shaping the Future," the Fall-Winter 2022-2023 leads with the first in what will be a series of articles about offshore wind development impacting Connecticut. That is followed by the inspiring story of how a dying forest was replanted for climate resilience. Next, a profile of longtime marine educator Tim Visel tells about his lasting impact on Connecticut schools and students. Lastly, the complex challenge of dealing with Contaminants of Emerging Concern is examined, with descriptions of how Sea Grant is involved and the particularly troublesome group of substances called PFAS.

The Future Of Microbiome Research, Anna Vietmeier

D.U.Quark

No abstract provided.

Descriptive Dna Barcoding Of Argas (Persicargas) Arboreus And Argas (Persicargas) Persicus Ticks (Ixodida: Argasidae) Infesting Birds In Egypt, Enas H. Ghallab, Ayat Yousery, Mona G. Shaalan

Harold W. Manter Laboratory of Parasitology: Library Materials

Argas ticks are primary parasites of birds with veterinary importance. Nevertheless, these ticks have received little attention regarding molecular identification studies. DNA barcoding is a powerful technique for identifying tick species besides traditional morphological identification. The present work is a first effort to divulge DNA sequences of Argas (Persicargas) arboreus from Egypt and worldwide. We used cytochrome c oxidase subunit I (COI) from A. arboreus infesting herons, and from the fowl tick Argas (Persicargas) persicus. Our results pointed out another success for the Folmer primers that are widely used in DNA barcoding, permitting the discrimination …

Upper Temperature Limit Of Larval Pacifc Lamprey Entosphenus Tridentatus: Implications For Conservation In A Warming Climate, Timothy A. Whitesel, Christina T. Uh

Biology Faculty Publications and Presentations

Climate models suggest that by 2100, maximum temperatures where many larval Pacific lamprey, Entosphenus tridentatus, rear now may approach 27–31 °C. Little information exists on whether larval Pacific lamprey can tolerate these temperatures. We used acclimated chronic exposure (ACE) and direct acute exposure (DAE) experiments to determine the water temperature that is lethal to larval Pacific lamprey and whether sublethal water temperatures influence larval burrowing behavior. After 30 days in ACE experiments, all larvae survived in temperatures averaging ≤ 27.7 °C, no larvae survived in temperatures averaging ≥ 30.7 °C and the ultimate upper incipient lethal temperature (UILT) was …

Sitting Time And Insulin Resistance In 6,931 United States Adults: The Role Of Abdominal Adiposity, Kayla Marie Parker

Theses and Dissertations

This cross-sectional investigation of 6,931 U.S. adults examined the relationship between sitting time and insulin resistance. A primary objective was to evaluate how this relationship was mediated by the following variables: age, sex, race, year of assessment, cigarette smoking, physical activity, body mass index (BMI), and waist circumference. Self-reported sitting time, measured in minutes per day, was the exposure variable. Insulin resistance, indexed by the homeostatic model assessment of insulin resistance (HOMA-IR), was the outcome variable. Data were used from the 2011-2018 National Health and Nutrition Examination Survey (NHANES). Results showed a strong, positive association between sitting time and insulin …

Treatment Of Epilepsy Using A Targeted P38Γ Kinase Gene Therapy, Nicolle Morey, Magdalena Przybyla, Julia Van Der Hoven, Yazi D Ke, Fabien Delerue, Lars M Ittner

Faculty, Staff and Student Publications

Hyperphosphorylated microtubule-associated protein tau has been implicated in dementia, epilepsy, and other neurological disorders. In contrast, site-specific phosphorylation of tau at threonine 205 (T205) by the kinase p38γ was shown to disengage tau from toxic pathways, serving a neuroprotective function in Alzheimer's disease. Using a viral-mediated gene delivery approach in different mouse models of epilepsy, we show that p38γ activity-enhancing treatment reduces seizure susceptibility, restores neuronal firing patterns, reduces behavioral deficits, and ameliorates epilepsy-induced deaths. Furthermore, we show that p38γ-mediated phosphorylation of tau at T205 is essential for this protection in epilepsy, as a lack of this critical interaction reinstates …

Coronary Artery Calcium Score On Standard Of Care Oncologic Ct Scans For The Prediction Of Adverse Cardiovascular Events In Patients With Non-Small Cell Lung Cancer Treated With Concurrent Chemoradiotherapy, Efstratios Koutroumpakis, Ting Xu, Juan Lopez-Mattei, Tinsu Pan, Yang Lu, Radhe Mohan, Qing H Meng, Ruitao Lin, Tianlin Xu, Anita Deswal, Zhongxing Liao

Faculty, Staff and Student Publications

INTRODUCTION: Chemoradiotherapy (CRT) has been associated with increased incidence of cardiovascular (CV) adverse events (CVAE). Coronary artery calcium scoring (CAC) has shown to predict coronary events beyond the traditional CV risk factors. This study examines whether CAC, measured on standard of care, non-contrast chest CT (NCCT) imaging, predicts the development of CVAE in patients with non-small cell lung cancer (NSCLC) treated with CRT.

METHODS: Patients with NSCLC treated with CRT at MD Anderson Cancer Center from 7/2009 until 4/2014 and who had at least one NCCT scan within 6 months from their first CRT were identified. CAC scoring was performed …

A Time And Place For Inhibiting Autophagy, Boyi Gan

Faculty, Staff and Student Publications

Autophagy is an attractive therapeutic target in cancer. Successful autophagy-focused clinical intervention will require a detailed understanding of when and where autophagy is important during tumorigenesis. In this issue of Cancer Research, Khayati and colleagues use state-of-the-art genetically engineered mouse models to demonstrate that transient systemic inhibition of autophagy can irreversibly impair the growth of established lung tumors with a good tolerability in normal tissues, suggesting a therapeutic strategy for cancer treatment.

Sustained Aurora Kinase B Expression Confers Resistance To Pi3k Inhibition In Head And Neck Squamous Cell Carcinoma, Pooja A Shah, Vaishnavi Sambandam, Anne M Fernandez, Hongyun Zhao, Tuhina Mazumdar, Qi Wang, Soma Ghosh, Mitchell J Frederick, Jing Wang, Faye M Johnson

Faculty, Staff and Student Publications

UNLABELLED: Tumor suppressor mutations in head and neck squamous cell carcinoma (HNSCC) dominate the genomic landscape, hindering the development of effective targeted therapies. Truncating and missense mutations in NOTCH1 are frequent in HNSCC, and inhibition of PI3K can selectively target NOTCH1 mutant (NOTCH1MUT) HNSCC cells. In this study, we identify several proteins that are differentially regulated in HNSCC cells after PI3K inhibition based on NOTCH1MUT status. Expression of Aurora kinase B (Aurora B), AKT, and PDK1 following PI3K inhibition was significantly lower in NOTCH1MUT cell lines than in wild-type NOTCH1 (NOTCH1WT) cells or NOTCH1MUT cells with acquired resistance to PI3K …

Improving Adjacency List Storage Methods For Polypeptide Similarity Analysis, Arianna Swensen

Honors Theses

Protein design is a complex biomolecular and computational problem. Working on increasingly large protein folding problems requires an improvement in current analysis methods available. This work first discusses various methods of protein design, including de novo protein design, which is the primary focus of this thesis. Then, a new approach utilizing a B+ tree to effectively store and query a graph of keys and vertices is proposed in order to store the number of times two polypeptides are considered to be similar. This approach is found to have a reduction in time complexity from current mapping methods and thus provides …

Rad51-Mediated Interhomolog Recombination During Budding Yeast Meiosis Is Promoted By The Meiotic Recombination Checkpoint And The Conserved Pif1 Helicase, Andrew Ziesel, Qixuan Weng, Jasvinder S. Ahuja, Abhishek Bhattacharya, Raunak Dutta, Evan Cheng, G. Valentin Borner Ph.D., Michael Lichten, Nancy M. Hollingsworth

Biological, Geological, and Environmental Faculty Publications

During meiosis, recombination between homologous chromosomes (homologs) generates crossovers that promote proper segregation at the first meiotic division. Recombination is initiated by Spo11-catalyzed DNA double strand breaks (DSBs). 5' end resection of the DSBs creates 3' single strand tails that two recombinases, Rad51 and Dmc1, bind to form presynaptic filaments that search for homology, mediate strand invasion and generate displacement loops (D-loops). D-loop processing then forms crossover and noncrossover recombinants. Meiotic recombination occurs in two temporally distinct phases. During Phase 1, Rad51 is inhibited and Dmc1 mediates the interhomolog recombination that promotes homolog synapsis. In Phase 2, Rad51 becomes active …

Unmanned Aerial Vehicle Based Tree Canopy Characteristics Measurement For Precision Spray Applications, Md Sultan Mahmud, Long He, Paul Heinemann, Daeun Choi, Heping Zhu

Agricultural and Environmental Sciences Faculty Research

The critical components for applying the correct amount of agrochemicals are fruit tree characteristics such as canopy height, canopy volume, and canopy coverage. An unmanned aerial vehicle (UAV)-based tree canopy characteristics measurement system was developed using image processing approaches. The UAV captured images using a high-resolution red-green-blue (RGB) camera. A digital surface model (DSM) and a digital terrain model (DTM) were generated from the captured images. A tree canopy height map was generated from the subtraction of DSM and DTM. A total of 24 apple trees were randomly targeted to measure the canopy characteristics. Region of interest (ROI) was generated …

(R1980) Effect Of Climate Change On Brain Tumor, Pardeep Kumar, Sarita Jha, Rajiv Aggarwal, Govind Kumar Jha

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, we introduce a new dynamical model addressing the variation in climate condition due the presence of microorganisms. We also introduce a new dynamical model of cancer growth which includes three interactive cell populations with drug free environment, namely tumor cells, healthy host cells, and immune effector cells. In this, we considered the super growth of tumor cells. For the choice of certain parameters, both of the systems exhibit chaotic behavior. The aim of this work is to design the controller to control the chaos and to provide sufficient conditions which achieve synchronization of two non-identical systems, which …

Abundance And Territory Location Data Of Forest Songbirds To Determine Effects Of Pipeline Collocation As A Mitigation Strategy, Lillie Langlois

All Data Sets

These data were collected for the purpose of determining potential ecological costs associated with a mitigation strategy used in shale gas development in the Appalachian basin. Collocation is the practice of siting new shale gas pipelines adjacent to existing surface disturbance such as forest roads to reduce habitat fragmentation and loss of core forest. These data result from spot mapping for species of songbird at paired forest road and shale gas corridors (expanded access roads collocated with pipelines) between May and July 2013 in north-central Pennsylvania, USA. The data file contains nine sheets that report data from different pieces of …

A Case Of Transverse Myelitis Secondary To Covid-19 Infection, Rahul Borra, Neal T. Patel, Raheel Shaikh, Mayur S. Parmar, Sujatha Borra

HPD Articles

Infection with COVID-19 (SARS-CoV-2) is associated with a variety of generalized and specific symptoms, including neurological complications of both the peripheral and central nervous systems. In this case report, we present the case of a previously healthy 55-year-old woman who was diagnosed with transverse myelitis following a previous infection with COVID-19. MRI showed progressive demyelination of the cervical and thoracic spinal cord, and cerebrospinal fluid (CSF) showed increased levels of protein and red blood cells and no markers of infection, including negative polymerase chain reaction (PCR) for COVID-19 antibodies. The patient was treated with a course of methylprednisolone, multiple treatments …

The Casnr L.I.N.K.S. Newsletter: Learning Innovation Network For K-12 Schools, Edition 11, December 2022, Bailey Feit, Tammy Mittelstet

CASNR L.I.N.K.S. Newsletter

The purpose of this L.I.N.K.S. newsletter is to provide a monthly update of opportunities and resources for K-12 schools to connect with the University of Nebraska's CASNR Food, Energy, Water, and Societal Systems (FEWS²) programs and partners.

This edition includes:

Teachers' corner, K-12 resources

Links to partners' newsletters

Top 5 success stories

FEWSS 2022 highlighted impact

Looking toward 2023

CASNR focus areas

Send your students to campus!

Scholarship opportunities

(R2020) Dynamical Study And Optimal Harvesting Of A Two-Species Amensalism Model Incorporating Nonlinear Harvesting, Manoj Kumar Singh, Poonam .

Applications and Applied Mathematics: An International Journal (AAM)

This study proposes a two-species amensalism model with a cover to protect the first species from the second species, with the assumption that the growth of the second species is governed by nonlinear harvesting. Analytical and numerical analyses have both been done on this suggested ecological model. Boundedness and positivity of the solutions of the model are examined. The existence of feasible equilibrium points and their local stability have been discussed. In addition, the parametric conditions under which the proposed system is globally stable have been determined. It has also been shown, using the Sotomayor theorem, that under certain parametric …