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Full-Text Articles in Life Sciences

ประสิทธิภาพของยีน Tef ในการจัดจำแนกเชื้อ Aspergillus ที่เพาะได้จากผู้ป่วยไทย, ประภาพร คชพงษ์ Jan 2023

ประสิทธิภาพของยีน Tef ในการจัดจำแนกเชื้อ Aspergillus ที่เพาะได้จากผู้ป่วยไทย, ประภาพร คชพงษ์

Chulalongkorn University Theses and Dissertations (Chula ETD)

Aspergillosis เป็นโรคติดเชื้ออันตรายถึงแก่ชีวิต มีสาเหตุมาจากเชื้อราในจีนัส Aspergillus การวินิจฉัยโรคในปัจจุบัน การเพาะแยกเชื้อและจัดกลุ่มตามลักษณะทางสัณฐานวิทยายังคงเป็นวิธีมาตรฐาน การตรวจหา galactomannan มักใช้ตรวจวินิจฉัยโรคในผู้ป่วยกลุ่มเสี่ยงเท่านั้น ในขณะที่เทคนิคทางอณูชีววิทยาอาศัยข้อมูลสารพันธุกรรมของ “its region” ในการจำแนกกลุ่มเชื้อระดับสปีชีส์ แต่อย่างไรก็ตามข้อมูลดังกล่าวถูกพิสูจน์ว่าสามารถจำแนกกลุ่มเชื้อราก่อโรคในคนในระดับสปีชีส์ได้ต่ำ ในด้านการรักษาสปีชีส์ของเชื้อ Aspergillus มักไม่ถูกนำมาพิจารณาร่วมเพื่อการเลือกกลุ่มยาแม้ว่ายังคงมีผู้ป่วยบางรายที่ตอบสนองต่อการรักษาไม่ดีเนื่องจากเชื้อสาเหตุดื้อต่อยาต้านเชื้อรา ด้วยเหตุดังกล่าวเพื่อศึกษาความสัมพันธ์ระหว่างสปีชีส์และรูปแบบความไวรับต่อยา การค้นหายีนที่สามารถจำแนกเชื้อ Aspergillus ในระดับสปีชีส์ได้อย่างแม่นยำจึงเป็นสิ่งจำเป็นยีน “tef-1α” เป็นสารพันธุกรรมที่ได้รับการพิสูจน์แล้วว่ามีคุณสมบัติสามารถจำแนกเชื้อราเส้นสายในระดับสปีชีส์ได้สูง ในงานวิจัยนี้ ผู้วิจัยได้เปรียบเทียบผลการจำแนกกลุ่มเชื้อ Aspergillus ที่แยกได้จากผู้ป่วยจำนวน 227 ตัวอย่าง โดยใช้ข้อมูลสารพันธุกรรม “its region” และ“tef-1α” จากผลการศึกษาพบว่าสารพันธุกรรมจากยีน“tef-1α” (D=0.8461) มีความสามารถในการจำแนกเชื้อในระดับสปีส์สูงกว่าบริเวณ “its” (D=0.796) โดยเฉพาะอย่างยิ่งใน section Fumigati ข้อมูลสารพันธุกรรมจาก “its region” สามารถแบ่งเชื้อกลุ่มดังกล่าวออกได้เพียง 1 สปีชีส์ คือ A. fumigatus ในขณะที่ยีน“tef-1α” สามารถแบ่งออกเป็น A. fumigatus และอีก 2 สปีชีส์ คือ A. lentulus และ A. udagawa ซึ่งเป็นเชื้อที่ดื้อต่อยา amphotericin B โดยกำเนิด โดยสรุป ผลจากงานวิจัยนี้ชี้ให้เห็นว่าการจำแนกสปีชีส์ของเชื้อ Aspergillus โดยใช้ยีนทุติยภูมิ “tef-1α” สามารถบ่งชี้กลุ่มยาที่เหมาะสมต่อการรักษาได้


Functional Characterization Of Pacific White Shrimp Litopenaeus Vannamei Heat Shock Protein 90 In Response To White Spot Syndrome Virus Infection, Warumporn Yingsunthonwattana Jan 2023

Functional Characterization Of Pacific White Shrimp Litopenaeus Vannamei Heat Shock Protein 90 In Response To White Spot Syndrome Virus Infection, Warumporn Yingsunthonwattana

Chulalongkorn University Theses and Dissertations (Chula ETD)

Heat shock proteins (HSPs) are host chaperones that can be used by viruses to facilitate various steps of viral infections. In this study, we found that Litopenaeus vannamei heat shock protein 90 (LvHSP90) is a viral-responsive protein, due to a significant transcriptional and translational upregulation following white spot syndrome virus (WSSV) infection. Suppression of LvHSP90 significantly reduced WSSV infection which was corresponded with significantly decreased expressions of viral genes, including the immediate-early genes and viral DNA polymerase. Conversely, injecting shrimp with WSSV that had been co-incubated with a recombinant LvHSP90 (rLvHSP90) promoted WSSV infection as evidenced by an increased cumulative …


Co-Expression Network Analysis Of Transcript Levels Under Salt-Stress Condition Of Thai Rice With Time-Series Data And Weighted Graph, Pajaree Sonsungsan Jan 2023

Co-Expression Network Analysis Of Transcript Levels Under Salt-Stress Condition Of Thai Rice With Time-Series Data And Weighted Graph, Pajaree Sonsungsan

Chulalongkorn University Theses and Dissertations (Chula ETD)

Rice (Oryza sativa) is a plant that is sensitive to salinity, which affects the growth of rice, leading to reduced rice production. The development of salt-tolerant rice varieties through the study of genes that can withstand salinity has long been an important task. Nevertheless, the mechanisms underlying salinity tolerance in rice remain complex. Hence, the study of mechanisms and genes related to salinity tolerance remains a crucial and demanding field in current research. This research presents a strategy for the analysis of gene expression data, employing Weighted Gene Co-expression Network Analysis (WGCNA) to pinpoint genes responsible for conferring salinity tolerance …


Biomarker Identification Of Pancreatic Ductal Adenocarcinoma Metastasis By Systems Biology Approach, Tanakamol Mahawan Jan 2023

Biomarker Identification Of Pancreatic Ductal Adenocarcinoma Metastasis By Systems Biology Approach, Tanakamol Mahawan

Chulalongkorn University Theses and Dissertations (Chula ETD)

Systems biology synergises biology with computational sciences, offering a holistic perspective and cutting-edge tools like machine learning (ML) to reveal disease biomarkers. ML can identify key molecular signals from omics data for biomarker candidate discovery. Effective ML demands practices avoiding data leakage and enhancing reproducibility. This study aimed to build a robust pipeline for biomarker candidates discovery using ML and applied it to pancreatic ductal adenocarcinoma (PDAC). PDAC is an aggressive pancreatic cancer with a poor prognosis. Over 80% of patients are diagnosed at late metastatic stages with no standard markers known for rapid and cost-effective metastasis diagnosis. Biomarkers for …


Bezlotoxumab Binding Specificity To Toxin B Of Clostridium Difficile, Kun Karnchanapandh Jan 2023

Bezlotoxumab Binding Specificity To Toxin B Of Clostridium Difficile, Kun Karnchanapandh

Chulalongkorn University Theses and Dissertations (Chula ETD)

Clostridioides difficile infection (CDI) is one of the significant global health issues. Toxin B is the main target protein preventing CDI recurrence. Clinical research has shown that bezlotoxumab (Bez), a monoclonal antibody designed to prevent CDI recurrences, is less effective against the B2 strain compared to the B1 strain, resulting in a high recurrence rate. Bez functions by binding to the epitope 1 and 2 regions in the combined repetitive oligopeptide (CROP) domain. Some binding residues are distinctively different between B1 and B2 strains. In this work, our goal was to understand and compare the interaction of toxins B1 and …


การเปลี่ยนแปลงของ Vglut1 ในสมองส่วนฮิปโปแคมปัส และเซลล์ประสาทโดปามีนในสมองส่วนซับสแตนเชีย ไนกรา ของหนูเมาส์สายพันธุ์ Balb/C ที่เหนี่ยวนำให้เกิดโรคลูปัสโดยพริสเทน, ทิพย์ภากร อินทรคช Jan 2023

การเปลี่ยนแปลงของ Vglut1 ในสมองส่วนฮิปโปแคมปัส และเซลล์ประสาทโดปามีนในสมองส่วนซับสแตนเชีย ไนกรา ของหนูเมาส์สายพันธุ์ Balb/C ที่เหนี่ยวนำให้เกิดโรคลูปัสโดยพริสเทน, ทิพย์ภากร อินทรคช

Chulalongkorn University Theses and Dissertations (Chula ETD)

การศึกษาวิจัยในครั้งนี้มีวัตถุประสงค์เพื่อศึกษาการแสดงออกของ VGLUT1 ในสมองส่วนฮิปโปแคมปัส ที่ส่งผลต่อพฤติกรรมการรู้คิดบกพร่อง และศึกษาการสูญเสียของเซลล์ประสาทโดปามีนในสมองส่วนซับสแตนเชีย ไนกรา ที่ส่งผลต่อพฤติกรรมการเคลื่อนไหวบกพร่องในหนูเมาส์ที่ถูกเหนี่ยวนำให้เกิดโรคลูปัสโดยพริสเทน โดยการทดลองในครั้งนี้ศึกษาในหนูเมาส์ BALB/cAJcl เพศเมีย จำนวน 30 ตัว โดยแบ่ง เป็น 2 กลุ่ม ได้แก่ หนูเมาส์กลุ่ม sham และหนูเมาส์กลุ่ม pristane-induced lupus หนูที่เมาส์กลุ่ม sham จะได้รับการฉีด saline ขนาด 0.5 มิลลิลิตร และหนูเมาส์กลุ่ม pristane-induced lupus ที่ได้รับการฉีด pristane ขนาด 0.5 มิลลิลิตร ผ่านทางช่องในวันที่ 1 เช่นเดียวกัน โดยในทุก ๆ 1 เดือน หนูเมาส์ทั้ง 2 กลุ่ม ถูกชั่งน้ำหนักและเก็บเลือด หลังจากนั้นในเดือนที่ 4 หนูเมาส์ทั้ง 2 กลุ่ม จะได้รับการทดสอบพฤติกรรม ได้แก่ open field test, novel object recognition test, และ pole test หลังจากทดสอบพฤติกรรมหนูเมาส์ทั้ง 2 กลุ่ม ถูกผ่าตัดเก็บชิ้นเนื้อสมองไปย้อม microglia และ astrocytes ในสมองส่วนฮิปโปแคมปัส และในสมองส่วนซับสแตนเชีย ไนกรา ย้อม VGLUT1 ในสมองส่วนฮิปโปแคมปัส และย้อม Tyrosine Hydroxylase (TH) ในสมองส่วนซับสแตนเชีย ไนกรา ด้วยวิธี immunohistochemistry ผลการทดลองพบว่าหนูเมาส์กลุ่ม pristane-induced lupus มีการเพิ่มขึ้นของ anti-dsDNA antibody ในซีรั่ม และมีม้ามโต ซึ่งคล้ายกับการเกิดโรคลูปัสในมนุษย์ นอกจากนี้ยังพบว่าหนูเมาส์กลุ่ม pristane-induced lupus มีการเพิ่มขึ้นของ …


Antioxidant And Anticancer Activities Of Mushroom Phellinus Linteus And Khaao-Yen-Nuea Smilax Sp. Extract Mixture, Alvi Jauharotus Syukriya Jan 2023

Antioxidant And Anticancer Activities Of Mushroom Phellinus Linteus And Khaao-Yen-Nuea Smilax Sp. Extract Mixture, Alvi Jauharotus Syukriya

Chulalongkorn University Theses and Dissertations (Chula ETD)

Recently, a number of alternative source including the bioactive compounds from plant and fungi are necessary to explore as therapeutic against cancer. This study aims to investigated the antioxidant and anticancer activities of Smilax sp. and Phellinus linteus (P. linteus) crude extract individually, also their mixture ratio variation including combination 1 (Smilax sp. 50%: P. linteus 50%), combination 2 (Smilax sp. 25%: P. linteus 75%), and combination 3 (Smilax sp. 75%: P. linteus 25%). The individually extract and its mixtures were investigated the physiochemical characterization such as total phenolic content and total polysaccharide compound. Furthermore, the antioxidant activities of extracted …


Microencapsulation Of Lactobacillus Plantarum Mb001 And Its Probiotic Effect On Growth Performance And Gut Integrity Of Broile Rs, Sasi Vimon Jan 2023

Microencapsulation Of Lactobacillus Plantarum Mb001 And Its Probiotic Effect On Growth Performance And Gut Integrity Of Broile Rs, Sasi Vimon

Chulalongkorn University Theses and Dissertations (Chula ETD)

The objectives of this work were 1) to study the preparation and characterization of LPMB001/AG-AL, 2) todetermine the characteristics, stability and viability of LPMB001/AG-AL against simulated gastrointestinal tract, high temperature and storage conditions and 3) To evaluate the supplementation of LPMB001/AG-AL on growth performance,ileal digestibility, intestinal morphology and microbiome in broiler chickens. The present work declared microcapsule networks based on polymer matrices (sodium alginate, AL and agar, AG) and charges under ionic crosslink aw emulsion to encapsulate probiotics for extensive stability in adverse conditions. The microcapsule was studied on physicochemicalcharacteristics, swelling efficiency as well as release pertormance and viability under …


Screening Of Lactate Utilizing Bacteria And Their Beneficial Properties To Improve Energy Balance, Production And Ruminal Fermentation In Crossbred Dairy Goats, Saranporn Poothong Jan 2023

Screening Of Lactate Utilizing Bacteria And Their Beneficial Properties To Improve Energy Balance, Production And Ruminal Fermentation In Crossbred Dairy Goats, Saranporn Poothong

Chulalongkorn University Theses and Dissertations (Chula ETD)

Sixty-three strains were isolated from ruminal fluid of crossbred dairy goats. Based on phenotype and 16S rRNA gene, sixteenbacterial groups were identified and two novel species of Selenomonas were purposed in this study. The strain mPRGC5 was purposed as Selenomonas runimis and the strain mPRGC8 was named Selenomonas caprae. The antimicrobial activity of all the strains was determined.Ligilactobacillus salivarius MP3 showed antibacterial activity against Cutibacterium acnes subsp. acnes DSM 1897' and Kocuria thizophila Mill. The antimicrobial substance was genomically identified as enterolysin A. Furtherniore, L. salivarius MP3 presented probiotic properties and the potential antimicrobial activity against pathogens. The fourteen strains …


Investigating Of Candidate Genes Affecting Milk Production In Dairy Cattle Using Systematic Review And Whole Genome Sequencing Database, Xiaoxian Su Jan 2023

Investigating Of Candidate Genes Affecting Milk Production In Dairy Cattle Using Systematic Review And Whole Genome Sequencing Database, Xiaoxian Su

Chulalongkorn University Theses and Dissertations (Chula ETD)

Milk production traits in dairy cattle, such as milk yield, fat content, and protein levels, are pivotal to the economic success of the dairy industry. These traits not only determine the quality and quantity of milk produced but also directly impact the profitability of dairy operations. Consequently, a deep understanding of the genetic architecture underlying these traits is essential for the development of effective breeding programs aimed at enhancing milk production and quality. The purpose of this study is to identify potential candidate genes related to milk production in Thai dairy cattle through systematic review of genome wide association study …


Prioritization Of Candidate Genes For Mastitis Resistance Trait In Genome-Wide Association Studies (Gwas) Utilizing Multiple Methodologies In Thai Dairy Cattle, Nhu Le Uyen Vo Jan 2023

Prioritization Of Candidate Genes For Mastitis Resistance Trait In Genome-Wide Association Studies (Gwas) Utilizing Multiple Methodologies In Thai Dairy Cattle, Nhu Le Uyen Vo

Chulalongkorn University Theses and Dissertations (Chula ETD)

Mastitis affects milk yield in dairy cattle worldwide, leading to economic losses. Recognized as a polygenic trait, mastitis resistance is influenced by genetic, environmental, and physiological factors. This study aimed to enhance the genetic architecture and selection of the candidate for mastitis resistance traits in Thai dairy cattle by several methods. The study consisted of two parts. In Part 1, the study is divided into 1A) collecting genes from a systematic review of published GWAS, 1B) Analyzing the gene list with the Thai dairy cattle whole genome sequencing database, and 1C) Performing pathway enrichment analysis to identify candidate genes. Further …


Figure Set Update: An Inquiry-Based Module Aligned With The 4dee Framework For Teaching About Functional Responses And Biological Control, Rosny Jean, Linda Auker, Suann Yang, Jeremy Hsu Jan 2023

Figure Set Update: An Inquiry-Based Module Aligned With The 4dee Framework For Teaching About Functional Responses And Biological Control, Rosny Jean, Linda Auker, Suann Yang, Jeremy Hsu

Open Educational Resources

THE ISSUE

Biological control agents are used in a wide range of contexts to limit damage from pests. However, the broader ecological consequences of such agents often are unclear before ecological risk assessments are performed. This Figure Set guides students to think through potential consequences of using biological control agents, and then uses a specific study to challenge students to interpret results from laboratory and caged field experiments. This Figure Set also introduces the concept of functional responses to students.

FOUR DIMENSIONAL ECOLOGY EDUCATION (4DEE) FRAMEWORK

  • Core Ecological Concepts:
    • Organisms
      • Resources and regulators
    • Communities
      • Predation
  • Ecology Practices:
    • Quantitative reasoning and …


Correction To: Genetic Characterization And Expression Analysis Of Wheat (Triticum Aestivum) Line 07or1074 Exhibiting Very Low Polyphenol Oxidase (Ppo) Activity, S. M. Hystad, J. M. Martin, R. A. Graybosch, M. J. Giroux Jan 2023

Correction To: Genetic Characterization And Expression Analysis Of Wheat (Triticum Aestivum) Line 07or1074 Exhibiting Very Low Polyphenol Oxidase (Ppo) Activity, S. M. Hystad, J. M. Martin, R. A. Graybosch, M. J. Giroux

Department of Agronomy and Horticulture: Faculty Publications

The above mentioned article was published in 2015 with an error in the naming of one of the allele sequences for the PPO gene on the D genome. The PPO-D1f allele was incorrectly named as it is identical to the PPO-D1c allele previously published in GenBank by the authors on March 11th, 2014. An alignment between the previously published PPOD1c allele and a resequencing of the parental line 07OR1074 shows that the PPO-D1f allele is identical to the PPO-D1c allele. The allele in the paper referred to as PPO-D1f should be treated as PPO-D1c and can be accessed at NCBI …


The Biggest Grower: A Youth Gardening Competition For Growing Specialty Crops And Urban Farmers, Stacy A. Adams, Terri James Jan 2023

The Biggest Grower: A Youth Gardening Competition For Growing Specialty Crops And Urban Farmers, Stacy A. Adams, Terri James

Department of Agronomy and Horticulture: Faculty Publications

Youth today have tendencies for unhealthy lifestyles, being sedentary, consuming high fat diets low in fruits and vegetables, all contributing to child obesity, Type 2 diabetes, hypertension, and precedence for life-long health concerns. For rural and economically disadvantaged urban households, poor diet is directly attributed to the inaccessibility of fresh produce, affordability and understanding of preparation of various specialty crops. Through a grant from the NE Specialty Crop Block Funding Program, The Biggest Grower Competition (BGC) was developed as a summer extension education program for youth in 8th through 12th grade. Project goals included; provide educational materials on …


The Use Of Diatoms (Amphora Sp.) As Immunostimulant In Pacific White Shrimp (Litopenaeus Vannamei) Diet, Ekthida Thongdet Jan 2023

The Use Of Diatoms (Amphora Sp.) As Immunostimulant In Pacific White Shrimp (Litopenaeus Vannamei) Diet, Ekthida Thongdet

Chulalongkorn University Theses and Dissertations (Chula ETD)

Amphora sp. is one of the interesting microalgae due to its rapid growth, high lipid content, ranging from 40-60% of dry biomass, suitability as live food for commercial aquatic animal larvae such as shrimp and abalone. The objective of this study is to evaluate the potential of Amphora sp. isolated from four different locations in the Gulf of Thailand: Sichang Island (ASC), Samae Sarn Island (ASS), Pranburi (APB), and Laem Yai (ALY) as immunostimulant in Pacific white shrimp (Litopenaeus vannamei) diet. Four Amphora sp. isolations were cultured and compared productivity. The results showed that ASC and ALY had higher productivity, …


Green Synthesis Of Lead Oxide Nanoparticles For Photo-Electrocatalytic And Antimicrobial Applications, Zia Ul Haq Khan, Noor Shad Gul, Faisal Mehmood, Sana Sabahat, Nawshad Muhammad, Abdur Rahim, Jibran Iqbal, Syed Khasim, Mohamed Abdel Salam, Taj Malook Khan, Jianbo Wu Jan 2023

Green Synthesis Of Lead Oxide Nanoparticles For Photo-Electrocatalytic And Antimicrobial Applications, Zia Ul Haq Khan, Noor Shad Gul, Faisal Mehmood, Sana Sabahat, Nawshad Muhammad, Abdur Rahim, Jibran Iqbal, Syed Khasim, Mohamed Abdel Salam, Taj Malook Khan, Jianbo Wu

All Works

Synthesis of nanoparticles (NPs) for many different uses requires the development of environmentally friendly synthesis protocols. In this article, we present a simple and environmentally friendly method to synthesize lead oxide (PbO) NPs from the plant material of the Mangifera indica. Analytical techniques such as spectroscopy, X-ray diffraction, and microscopy were used to characterize the synthesized PbO NPs, and their photo-electrocatalytic and antifungal properties were also evaluated. H2O2 was used to investigate the efficacy of removing methylene blue dye. At a range of pH values, H2O2 was used to study the role of hydroxyl radicals in the breakdown of methylene …


Indigenously Produced Biochar Retains Fertility In Sandy Soil Through Unique Microbial Diversity Sustenance: A Step Toward The Circular Economy, Munawwar Ali Khan, Alsayeda Zahra Salman, Shams Tabrez Khan Jan 2023

Indigenously Produced Biochar Retains Fertility In Sandy Soil Through Unique Microbial Diversity Sustenance: A Step Toward The Circular Economy, Munawwar Ali Khan, Alsayeda Zahra Salman, Shams Tabrez Khan

All Works

Introduction: Agricultural productivity in the arid hot desert climate of UAE is limited by the unavailability of water, high temperature, and salt stresses. Growing enough food under abiotic stresses and decreasing reliance on imports in an era of global warming are a challenge. Biochar with high water and nutrient retention capacity and acid neutralization activity is an attractive soil conditioner. This study investigates the microbial community in the arid soil of Dubai under shade house conditions irrigated with saline water and the shift in the microbial community, following 1 year of amendment with indigenously prepared biochar from date palm waste. …


Association Of The Gut Microbiota With Clinical Variables In Obese And Lean Emirati Subjects, Manal Ali Ahmad, Mirey Karavetian, Carole Ayoub Moubareck, Gabi Wazz, Tarek Mahdy, Koen Venema Jan 2023

Association Of The Gut Microbiota With Clinical Variables In Obese And Lean Emirati Subjects, Manal Ali Ahmad, Mirey Karavetian, Carole Ayoub Moubareck, Gabi Wazz, Tarek Mahdy, Koen Venema

All Works

Background: Growing evidence supports the role of gut microbiota in obesity, yet exact associations remain largely unknown. Specifically, very little is known about this association in the Emirati population. Methods: We explored differences in gut microbiota composition, particularly the Firmicutes/Bacteroidetes (F/B) ratio, between 43 obese and 31 lean adult Emirate counterparts, and its association with obesity markers, by using V3-V4 regions of 16 S ribosomal RNA gene sequencing data. Furthermore, we collected anthropometric and biochemical data. Results: The two major phyla in obese and lean groups were Firmicutes and Bacteroidetes. We observed a significantly lower alpha diversity (Shannon index) in …


Design Of Block Copolymer With Tunable Hydrophobic/Hydrophilic/Fluorophilic Interactions, Tatiane De Fatima Dutra Jan 2023

Design Of Block Copolymer With Tunable Hydrophobic/Hydrophilic/Fluorophilic Interactions, Tatiane De Fatima Dutra

Theses, Dissertations and Culminating Projects

Block copolymers (BCP) with balanced interactions and their resultant bulk-phase self-assembly have become increasingly important in advancing nanotechnology, separation, and energy applications. However, a few reports have addressed the synthesis challenge and bulk-phase self-assembly of such triblock copolymers. This thesis presents a facile route for preparing triblock copolymer via controlled radical and organocatalytic ring-opening polymerization that allows precise control over the incorporation of individual moieties in resultant polymer, responsible for balanced hydrophilic, hydrophobic/lipophilic, and fluorophilic interactions. Synthesized polymer with suggested self-assembled 2D lamellar nanostructure exhibits high-temperature stability. The long-term goal of this work is to selectively use this polymer class …


A Computational Study Of The Copper-Catalyzed Trifluoromethylation Of Boronic Acids, Kevin Nyhuis Jan 2023

A Computational Study Of The Copper-Catalyzed Trifluoromethylation Of Boronic Acids, Kevin Nyhuis

Theses, Dissertations and Culminating Projects

This work is a computational study of a reaction mechanism for the trifluoromethylation of boronic acids. Three steps of the proposed reaction mechanism are studied, •CF3 addition to a copper catalyst center, base promoted transmetalation between copper and aryl boronic acid, and bond forming reductive elimination in which the CF3 and aryl substituent form a bond. Limited information is known about this mechanism. This study uses computational methods to attempt to elucidate the mechanism and provide the groundwork for potential improvement. Quantum chemical methods in conjunction with tight-binding based conformational sampling methods are used to investigate the possible …


Investigating The Roles Of Active Site Residues K59, K119 And E168 In M. Tuberculosis Indole-3-Glycerol Phosphate Synthase, Maryum M. Bhatti Jan 2023

Investigating The Roles Of Active Site Residues K59, K119 And E168 In M. Tuberculosis Indole-3-Glycerol Phosphate Synthase, Maryum M. Bhatti

Theses, Dissertations and Culminating Projects

Tuberculosis (TB) is a disease that is caused by a bacteria called Mycobacterium tuberculosis and primarily attacks the lungs but can spread to other areas of the body as well. TB can develop resistance to drugs that may be used to cure the disease. Multidrug resistant TB is especially a growing issue as it does not respond to the two most powerful anti-TB drugs, isoniazid and rifampicin. For this reason, finding new ways to target TB are critically needed. One possible way to do this is to target the enzymes in the tryptophan biosynthetic pathway of M. tuberculosis. Studies have …


Social Cognitive Processes Explain Bias In Juror Decisions, Jaime J. Castrellon, Shabnam Hakimi, Jacob M. Parelman, Lun Yin, Jonathan R. Law, Jesse A.G. Skene, David A. Ball, Artemis Malekpour, Donald H. Beskind, Neil Vidmar, John M. Pearson, J. H. Pate Skene, R. Mckell Carter Jan 2023

Social Cognitive Processes Explain Bias In Juror Decisions, Jaime J. Castrellon, Shabnam Hakimi, Jacob M. Parelman, Lun Yin, Jonathan R. Law, Jesse A.G. Skene, David A. Ball, Artemis Malekpour, Donald H. Beskind, Neil Vidmar, John M. Pearson, J. H. Pate Skene, R. Mckell Carter

Faculty Scholarship

Jury decisions are among the most consequential social decisions in which bias plays a notable role. While courts take measures to reduce the influence of non-evidentiary factors, jurors may still incorporate biases into their decisions. One common bias, crime-type bias, is the extent to which the perceived strength of a prosecutor’s case depends on the severity of the crime. Moral judgment, affect and social cognition have been proposed as core processes underlying this and other biases. Behavioral evidence alone has been insufficient to distinguish these explanations. To identify the mechanism underlying crime-type bias, we collected functional magnetic resonance imaging patterns …


Minding Rights: Mapping Ethical And Legal Foundations Of ‘Neurorights’, Sjors Ligthart, Marcello Ienca, Gerben Meynen, Fruzsina Molnar-Gabor, Roberto Andorno, Christoph Bublitz, Paul Catley, Lisa Claydon, Thomas Douglas, Nita A. Farahany, Joseph J. Fins, Sara Goering, Pim Haselager, Fabrice Jotterand, Andrea Lavazza, Allan Mccay, Abel Wajnerman Paz, Stephen Rainey, Jesper Ryberg, Philipp Kellmeyer Jan 2023

Minding Rights: Mapping Ethical And Legal Foundations Of ‘Neurorights’, Sjors Ligthart, Marcello Ienca, Gerben Meynen, Fruzsina Molnar-Gabor, Roberto Andorno, Christoph Bublitz, Paul Catley, Lisa Claydon, Thomas Douglas, Nita A. Farahany, Joseph J. Fins, Sara Goering, Pim Haselager, Fabrice Jotterand, Andrea Lavazza, Allan Mccay, Abel Wajnerman Paz, Stephen Rainey, Jesper Ryberg, Philipp Kellmeyer

Faculty Scholarship

The rise of neurotechnologies, especially in combination with artificial intelligence (AI)-based methods for brain data analytics, has given rise to concerns around the protection of mental privacy, mental integrity and cognitive liberty – often framed as “neurorights” in ethical, legal, and policy discussions. Several states are now looking at including neurorights into their constitutional legal frameworks, and international institutions and organizations, such as UNESCO and the Council of Europe, are taking an active interest in developing international policy and governance guidelines on this issue. However, in many discussions of neurorights the philosophical assumptions, ethical frames of reference and legal interpretation …


Transboundary Marine Species At Risk & Their Recovery In A Changing Climate: Workshop Report, Jonathan J. Choi, Olga Koubrak, Jess Kuesel, Michelle B. Nowlin, Stephen E. Roady, Susan J. Rolston, David L. Vanderzwaag Jan 2023

Transboundary Marine Species At Risk & Their Recovery In A Changing Climate: Workshop Report, Jonathan J. Choi, Olga Koubrak, Jess Kuesel, Michelle B. Nowlin, Stephen E. Roady, Susan J. Rolston, David L. Vanderzwaag

Faculty Scholarship

No abstract provided.


Analysis For Prioritizing Risk Status And Sustainable Utilization Of Cattle, Sheep, And Goat Breeds In Türkiye, Mesut Yildirir, Seyrani̇ Koncagül, Yasemi̇n Öner, Ayşe Oya Akin Jan 2023

Analysis For Prioritizing Risk Status And Sustainable Utilization Of Cattle, Sheep, And Goat Breeds In Türkiye, Mesut Yildirir, Seyrani̇ Koncagül, Yasemi̇n Öner, Ayşe Oya Akin

Turkish Journal of Veterinary & Animal Sciences

Animal Genetic Resources (AnGR) are a warranty for future unknown conditions and needs. Due to this fact, sustainable use and conservation of AnGR have special importance, and to achieve reliable programs for these goals, the risk status of AnGR should be estimated accurately. The aim of this study was to estimate the risk status for three widely used domesticated livestock species of cattle, sheep, and goat in animal production: 6 cattle, 33 sheep, and 15 goat breeds were included in the analysis. Extinction probability (z) was taken as a criterion for the risk status of each breed. Data collection based …


Effect Of Lipid-Enriched Diet Associated With Bovine Recombinant Somatotropin On Superovulation Response And Embryo Recovery In Heifers, Richelle Matos Oliveira, Anselmo Domingos Ferreira Santos, Francisco Palma Rennó, Camilla Mendonça Silva Jan 2023

Effect Of Lipid-Enriched Diet Associated With Bovine Recombinant Somatotropin On Superovulation Response And Embryo Recovery In Heifers, Richelle Matos Oliveira, Anselmo Domingos Ferreira Santos, Francisco Palma Rennó, Camilla Mendonça Silva

Turkish Journal of Veterinary & Animal Sciences

The current study aimed to evaluate the effects of soybean oil supplementation associated with the administration of bovine recombinant somatotropin (rBST) on the population of ovarian follicles, standardization of both the superovulation response and embryo recovery in heifers. We used 40 Holstein heifers submitted to a 2 × 2 factorial, forming the experimental groups: DC-SL (control diet plus saline solution application); OL-SL (diet with soybean oil plus saline application); DC-rBST (control diet plus application of 320 mg rBST) and OL-rBST (diet with soybean oil plus the application of 320 mg rBST). The animals received two applications of 500 mg of …


Phenotypic And Genotypic Characterization Of Antimicrobial Resistance In Commonly Isolated Salmonella Serovars From Chickens, Seyyi̇de Sariçam İnce, Mehmet Akan Jan 2023

Phenotypic And Genotypic Characterization Of Antimicrobial Resistance In Commonly Isolated Salmonella Serovars From Chickens, Seyyi̇de Sariçam İnce, Mehmet Akan

Turkish Journal of Veterinary & Animal Sciences

Salmonellosis caused by Salmonella agents is the second most common zoonotic infection in humans. In recent years, Salmonella's increasing antimicrobial resistance (AMR) has been a concern. The major transmission route of Salmonella is consumption of contaminated poultry products. Therefore, monitoring of antimicrobial resistance in chicken-originated Salmonella is critically important. This study investigated AMR in four commonly isolated Salmonella serovars from chickens, namely Salmonella Enteritidis (S. Enteritidis), Salmonella Infantis (S. Infantis), Salmonella Kentucky (S. Kentucky), and Salmonella Typhimurium (S. Typhimurium). A total of 133 isolates were examined by phenotypic and genotypic AMR characterization. Resistance to 14 different antimicrobials and eight …


Are The Mandible Shapes Of Common (Paradoxurus Hermaphroditus) And Golden (Paradoxurus Zeylonensis) Palm Civets Different? A Pilot Study, İftar Gürbüz, Yasi̇n Demi̇raslan, Channa Rajapaksha, Devaka K. Weerakoon, Saminda Fernando Jan 2023

Are The Mandible Shapes Of Common (Paradoxurus Hermaphroditus) And Golden (Paradoxurus Zeylonensis) Palm Civets Different? A Pilot Study, İftar Gürbüz, Yasi̇n Demi̇raslan, Channa Rajapaksha, Devaka K. Weerakoon, Saminda Fernando

Turkish Journal of Veterinary & Animal Sciences

In this study adult common and golden palm civet mandibles were analysed by geometric morphometric method. For this purpose, the materials were photographed in accordance with the procedure and analysed using computer programs. No allometric component was detected in the comparison of the mandibles. The first principal component defined 28.657% of the total shape variation in the mandibles of the two groups that were analysed with a total of 19 landmarks. The samples were largely separated from each other in the principal component analysis. The shape differences were mostly in the caudal of the mandible. Also, in the common palm …


Occurrence Of Staphylococcus Aureus In Milk And Antibacterial Properties Of Some Herbal Extracts On Milk And Hospital-Acquired Strains, Reza Ebrahimi Hariry, Gülçi̇n Akca, Ayhan Fi̇lazi̇ Jan 2023

Occurrence Of Staphylococcus Aureus In Milk And Antibacterial Properties Of Some Herbal Extracts On Milk And Hospital-Acquired Strains, Reza Ebrahimi Hariry, Gülçi̇n Akca, Ayhan Fi̇lazi̇

Turkish Journal of Veterinary & Animal Sciences

Staphylococcus aureus is a remarkable infectious agent, and with the development of antibiotic resistance by S. aureus, finding new, effective, and safe alternative therapeutic options in animals and humans is crucially demanded. In this study, the occurrence of S. aureus was explored by collecting nonmastitis bovine milk samples first, and then the effects of herbal extracts on methicillinresistant S. aureus (MRSA) strains isolated from cow's milk and humans in the hospitals were investigated. The occurrences of S. aureus in bovine raw milk samples were 13.4%. All raw milk S. aureus isolates were fully susceptible to cefoxitin, ceftiofur, penicillin G, …


Efficacy Of Acacia Nilotica Bark Extract As An Alternative To Antibiotics In Broilers Challenged With Escherishia Coli From 15 To 28 Days, Muhammad Umer Zahid, Anjum Khalique, Shafqat Nawaz Qaisrani, Muhammad Ashraf, Ali Ahmad Sheikh, Muhammad Umar Yaqoob Jan 2023

Efficacy Of Acacia Nilotica Bark Extract As An Alternative To Antibiotics In Broilers Challenged With Escherishia Coli From 15 To 28 Days, Muhammad Umer Zahid, Anjum Khalique, Shafqat Nawaz Qaisrani, Muhammad Ashraf, Ali Ahmad Sheikh, Muhammad Umar Yaqoob

Turkish Journal of Veterinary & Animal Sciences

The present experiment was conducted to compare the effect of Acacia nilotica bark extract and antibiotic on different biological parameters in broilers challenged with E. coli. Five hundred 2-week-old broiler chicks were divided into five treatments (Cont, NC, PC, AN-BE3, and AN-BE5) with ten replicates per treatment (10 chicks per replicate), and the experiment was extended over 2 weeks. All chicks, except that of Cont were challenged with E. coli (10$^{7}$ CFU/bird). Cont: basal diet only; NC: challenged with E. coli; PC: NC + Zinc Bacitracin 50 mg/kg diet; AN-BE3: NC + A. nilotica bark extract supplementation 0.3%; …