Life Sciences Commons^™

Profiling The Cell Wall Polysaccharides Of Hemp (Cannabis Sativa L.) Inflorescence And Hempseed And Exploring Their Application As Ruminant Feed Ingredients, Miranda Agbana

Theses and Dissertations--Animal and Food Sciences

Hemp (Cannabis sativa L.) is used in the United States as a source of CBD oil, fiber, and grain. While hempseeds are consumed whole or as dehulled hemp hearts, hempseed oil is also a desirable seed oil in human nutrition. The process of collecting hempseed oil leaves behind hempseed cakes that are abundant in protein and fiber. Feeding of hempseed cakes to animals, including ruminants, has only initially been explored. Extraction of CBD from hemp inflorescences generates organic waste that may find a second purpose as a fiber feed for cattle. Little is known about the exact fiber composition …

Ultrasound-Based Structural And Functional Modifications Of Oat Protein: Complementary Effects Of High Pressure, Cysteine, And Flavonoids, Runnan Li

Theses and Dissertations--Animal and Food Sciences

Oat (Avena sativa L.), a specialty cereal grain belonging to the Poaceae family, is relatively abundant in nutritious protein (12–20%) and dietary fiber (β-glucan). The balanced hydrophilic/hydrophobic amino acid profile in oat protein relative to other plant sources provides numerous possibilities for formulating oat protein isolate (OPI) into a wide range of food products. Yet, there has been limited research on OPI and the application of this valuable protein source is hampered by its low solubility at neutral and mildly acidic conditions. This dissertation research aimed to elucidate the efficacy of high-intensity ultrasound (HIU) for structural modification of OPI …

Precision Livestock Farming And Personality As Tools To Understand Dairy Calf Individual Variation In Performance, Behavior, And Response To Stress, Megan Marie Woodrum Setser

Theses and Dissertations--Animal and Food Sciences

Individual differences impact animal responses to their environments and can be observed with animal personality (stable behavioral differences with populations) and food neophobia (avoidance of unfamiliar feeds). These individual differences can influence cattle performance and welfare. Precision technologies, such as automatic feeding systems (AFS) and accelerometers continuously measure feeding behaviors and activity and may allow us to relate individual differences to behaviors in the home environment. Therefore, the first objective was to determine if food neophobia was associated with feeding behaviors measured by AFS. Food neophobia was associated with rewarded visits to the AFS, but to no other feeding behaviors. …

New Frontiers In The Application Of Stable Isotopes To Ecological And Ecophysiological Research, Keith Alan Hobson (Editor), John P. Whiteman (Editor), Seth Newsome (Editor)

Biological Sciences Faculty Books

This Research Topic aims to present cutting-edge applications of stable isotope methods to animal and plant ecology and ecophysiology.

Remote Working And Online Education Among Neurodiverse Individuals, Kendall Smith

Emerging Writers

Many jobs and schools closed in response to the Covid-19 pandemic, and a vast majority of students and employees found it difficult to resume their education and careers online; however, those on the neurodiverse spectrum found it much harder. Upon first glance, it was easy to see how frustrating and stressful online schooling was for special needs students. Many had difficulty concentrating during virtual lectures or lacked motivation to stay on task. Likewise, many neurodiverse employees found that at-home distractions were far worse than in-office ones, and the loneliness from staying home all day was jarring. But after pulling research …

Telomeres: A Tool To Assess The Impacts Of Mining Contaminants On Riparian Songbirds, Lillian Krach, Bridger Creel, Megan Fylling, Zac Cheviron, Creagh Breuner

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Mining has left massive environmental and physical scars across the landscape. Aquatic and riparian landscapes in particular have been significantly impacted by traditional mining practices. Waste products left over from hard-rock mining leech heavy metals onto the landscape and these metals spread from headwater streams to major waterways (Lottermoser 2010). Heavy metals have been shown to cause physiological stress and challenges to organisms depending on the metal and the concentration (Baos et al. 2019, Boyd & Rajakaruna 2013). While some mining-impaired areas have undergone restoration efforts, is it enough? Typical restoration methods replace the contaminated floodplain, but not the riverbed …

Predators In Paradise: Ecotourism And Predator-Prey Dynamics In Monteverde, Costa Rica, Andrew Cremeans

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The use of camera trap surveys is increasingly common to investigate recurring diel activity of mammals. Investigation into the temporal overlap of mammals can provide unique insights into predator-prey dynamics. Understanding this relationship is essential to effectively manage and conserve both species. Extensive research across the tropics has found that daily activities of mammals were shaped by thermoregulation and trophic location in food webs. Although broad scale studies of daily patterns of mammals have enhanced our understanding of these constraints, many study sites included were remote protected areas under strict conservation measures. Such protected areas often had full complements of …

Understanding The Drivers Of Body Condition In Female Elk: Implications For Nutritional Ecology On Changing Landscapes, Nicole P. Bealer

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Ungulate body condition is often understood to reflect the nutritional resources on the landscape but is ultimately influenced by more than forage because body condition integrates both energetic costs and benefits. Factors driving variation in female body condition can be classified in both individual vs. environmental and bottom-up vs. top-down frameworks. My research evaluates how individual vs. environmental and bottom-up vs. top-down frameworks explain variation in ingesta-free body fat (IFBF) in female elk (Cervus canadensis). I used seven years (2015-2021) of IFBF data from monitored and recaptured female elk (n = 139) in the Ya Ha Tinda (YHT) population in …

A Comparison Of Divergence In Non-Introgressing Genes Across A Chickadee Hybrid Zone, Eliana K. Lowe

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Hybridization between species plays a very important role in the overall evolutionary history of many taxa. The study of hybrid zones can also provide insight into how species are responding to environmental factors such as climate change and changes in species interactions. The hybrid zone between the northern black-capped chickadee (Poecile atricapillus) and the southern Carolina chickadee (Poecile carolinensis) provides an insight into how hybridization is affecting two distinct species. Black-capped and Carolina hybrids have reduced fitness in the wild. Hybrids tend to have higher basal metabolic rates, less muscle growth, and less neuron growth to …

Determining Species-Specific False-Positive Rates Using Visual And Auditory Cues: A Case Study With Sagebrush Steppe Songbirds, Amelia K. Evavold

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Errors in wildlife field data threaten to bias resulting abundance and occupancy estimates if not properly accounted for or minimized. Methods to account for false-positive errors in wildlife data have not been as thoroughly developed as those for false-negative errors despite false-positives being present across diverse wildlife taxa and study systems. The calibration method to account for false-positives involves assessing the field detection method to determine how often false-positive errors occur in the field data. Rates can then be incorporated into estimations based on the field data to improve estimation accuracy. This study presents an application of the calibration approach …

Campylobacter Vaccination Reduces Diarrheal Disease And Infant Growth Stunting Among Rhesus Macaques, Sara M. Hendrickson, Archana Thomas, Hans-Peter Raué, Kamm Prongay, Andrew J. Haertel, Nicholas S. Rhoades, Jacob F. Slifka, Lina Gao, Benjamin K. Quintel, Ian J. Amanna, Ilhem Messaoudi, Mark K. Slifka

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Campylobacter-associated enteric disease is estimated to be responsible for more than 160 million cases of gastroenteritis each year and is linked to growth stunting of infants living under conditions of poor sanitation and hygiene. Here, we examine naturally occurring Campylobacter-associated diarrhea among rhesus macaques as a model to determine if vaccination could reduce severe diarrheal disease and infant growth stunting. Compared to unvaccinated controls, there are no Campylobacter diarrhea-associated deaths observed among vaccinated infant macaques and all-cause diarrhea-associated infant mortality is decreased by 76% (P = 0.03). By 9 months of age, there is a 1.3 cm increase in dorsal …

Chronic Alcohol Consumption Dysregulates Innate Immune Response To Sars-Cov-2 In The Lung, Sloan A. Lewis, Isaac R. Cinco, Brianna M. Doratt, Madison B. Blanton, Cherise Hoagland, Natali Newman, Michael Davies, Kathleen A. Grant, Ilhem Messaoudi

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Background Alcohol consumption is widespread with over half of the individuals over 18 years of age in the U.S. reporting alcohol use in the last 30 days. Moreover, 9 million Americans engaged in binge or chronic heavy drinking (CHD) in 2019. CHD negatively impacts pathogen clearance and tissue repair, including in the respiratory tract, thereby increasing susceptibility to infection. Although, it has been hypothesized that chronic alcohol consumption negatively impacts COVID-19 outcomes; the interplay between chronic alcohol use and SARS-CoV-2 infection outcomes has yet to be elucidated.

Methods In this study we employed luminex, scRNA sequencing, and flow cytometry to …

Monoclonal Antibody Therapy Of Breastfeeding Patient Infected With Sars-Cov-2: A Case Report, Nicole E. Marshall, Madison B. Blanton, Brianna M. Doratt, Delphine C. Malherbe, Monica Rincon, Ilhem Messaoudi

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Introduction: Although safety data demonstrated the efficacy and effectiveness of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccination for all individuals over 6 months of age, including pregnant and breastfeeding individuals, optimal treatment courses for symptomatic pregnant and lactating individuals infected with SARS-CoV-2 remain to be defined. Case Description: A coronavirus disease 2019 (COVID-19)-vaccinated breastfeeding woman received anti-SARS-CoV-2 monoclonal antibody treatment casirivimab–imdevimab 5 days after diagnosis of a symptomatic breakthrough SARS-CoV-2 infection. Results and Conclusions: The patient did not present with obvious defects in innate or adaptive cellular subsets, but compared with controls had minimal maternal antibody response to recommended …

Mild/Asymptomatic Covid-19 In Unvaccinated Pregnant Mothers Impairs Neonatal Immune Responses, Brianna M. Doratt, Suhas Sureshchandra, Heather E. True, Monica Rincon, Nicole E. Marshall, Ilhem Messaoudi

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Maternal SARS-CoV-2 infection triggers placental inflammation and alters cord blood immune cell composition. However, most studies focus on outcomes of severe maternal infection. Therefore, we analyzed cord blood and chorionic villi from newborns of unvaccinated mothers who experienced mild/asymptomatic SARS-CoV-2 infection during pregnancy. We investigated immune cell rewiring using flow cytometry, single-cell RNA sequencing, and functional readouts using ex vivo stimulation with TLR agonists and pathogens. Maternal infection was associated with increased frequency of memory T and B cells and nonclassical monocytes in cord blood. Ex vivo T and B cell responses to stimulation were attenuated, suggesting a tolerogenic state. …

Integrated Single Cell Analysis Shows Chronic Alcohol Drinking Disrupts Monocyte Differentiation In The Bone Marrow, Sloan A. Lewis, Brianna M. Doratt, Qi Qiao, Madison B. Blanton, Kathleen A. Grant, Ilhem Messaoudi

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Chronic heavy alcohol drinking (CHD) rewires monocytes and macrophages toward heightened inflammatory states with compromised antimicrobial defenses that persist after 1-month abstinence. To determine whether these changes are mediated through alterations in the bone marrow niche, we profiled monocytes and hematopoietic stem cell progenitors (HSCPs) from CHD rhesus macaques using a combination of functional assays and single cell genomics. CHD resulted in transcriptional profiles consistent with increased activation and inflammation within bone marrow resident monocytes and macrophages. Furthermore, CHD resulted in transcriptional signatures associated with increased oxidative and cellular stress in HSCP. Differentiation of HSCP in vitro revealed skewing toward …

Multimodal Profiling Of Term Human Decidua Demonstrates Immune Adaptations With Pregravid Obesity, Suhas Sureshchandra, Brianna M. Doratt, Heather E. True, Norma Mendoza, Monica Rincon, Nicole E. Marshall, Ilhem Messaoudi

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Leukocyte diversity of the first-trimester maternal-fetal interface has been extensively described; however, the immunological landscape of the term decidua remains poorly understood. We therefore profiled human leukocytes from term decidua collected via scheduled cesarean delivery. Relative to the first trimester, our analyses show a shift from NK cells and macrophages to T cells and enhanced immune activation. Although circulating and decidual T cells are phenotypically distinct, they demonstrate significant clonotype sharing. We also report significant diversity within decidual macrophages, the frequency of which positively correlates with pregravid maternal body mass index. Interestingly, the ability of decidual macrophages to respond to …

Characterizing The Developmental Role Of Autism-Risk Gene Adnp In A Zebrafish Model For Autism, Vaishnavi Balaji

Master's Theses

Autism spectrum disorder is a complex neurodevelopmental disorder characterized by impaired social

skills, restricted/ repetitive behaviors, and developmental delay. The disease has a genetic component,

and mutations in the adnp gene have been found in 0.17% of non-inherited genetic cases of the disorder. The exact molecular mechanism by which adnp is involved in the development of autism is not known. This study aimed to use zebrafish to determine the phenotypic effects of adnp mutations using two adnp paralogs- adnpA and adnpB to understand the underlying mechanism. Novel zygotic adnp double heterozygous mutants (A+/- B+/-) were previously generated using …

Vitamin D Receptor Mediates Liver Ischemia And Reperfusion Injury By Autophagy-Regulated M2 Macrophage Polarization, Mingming Fang, Chen Zhong

Turkish Journal of Biology

Liver ischemia and reperfusion (IR) injury is the major complication of liver-related operations. Macrophage polarization has an essential effect on the mechanism of liver IR injury. Vitamin D receptor (VDR) has been found to regulate macrophage polarization and alleviate IR injury. Nevertheless, the correlation between VDR and macrophage polarization in liver IR injury has not been clearly elucidated. VDR knockout mice and wild-type littermates underwent partial liver ischemia for 90 min and reperfusion for 6 h. RAW264.7 cells were also used to verify the influence of VDR on macrophage polarization in vitro. VDR activation could promote M2 macrophage polarization and …

Antiadipogenic And Antiobesogenic Effects Of Pterostilbene In 3t3-L1 Preadipocyte Models, Bi̇rgül Gülnar, İpek Canatar, Si̇bel Özdaş

Turkish Journal of Biology

Since obesity causes at least 2.8 million death each year and is a major risk factor for many diseases, it is critical to evaluate alternative treatment approaches. In this context, studies on the research of natural product-based therapeutics in the fight against obesity are increasing. In this study, it was aimed to evaluate the antiadipogenic and antiobesogenic efficacy of pterostilbene a natural phenolic compound in 3T3-L1 cells. The mature 3T3-L1 adipocytes were exposed to pterostilbene at different concentrations and half-maximum inhibitory concentrations (IC50) were determined by MTT assay. Oil-Red-O staining was applied to determine lipid accumulation. Phase contrast microscopy, Giemsa, …

Distributional Ecology Of Noccaea Vesicaria In Relation To The Anatolian Diagonal, İlayda Dumlupinar, Hakan Gür, Bariş Özüdoğru

Turkish Journal of Botany

Anatolia is located at the intersection of three of the world's 36 biodiversity hotspots (the Caucasus, Irano-Anatolian, and Mediterranean Basin biodiversity hotspots) and has about 10,000 plant species, over 3000 of which are endemic. Among the many reasons for the astonishing biodiversity of Anatolia, one that stands out is the Anatolian Diagonal. Although the Anatolian Diagonal has long been recognized as a biogeographical boundary between Central and Eastern Anatolia, its exact functioning is still not well understood. Thus, in this study, our aims were 1) to assess the environmental barrier function of the Anatolian Diagonal for a plant species, Noccaea …

Haplotype Diversity And Molecular Phylogeny Of Wild Crambe L. (Brassicaceae) Taxa Of Turkey, Burcu Tarikahya Hacioğlu, Kurtuluş Özgi̇şi̇

Turkish Journal of Botany

Revealing genetic diversity is both essential for plant systematics and also provides important information for agricultural sciences. Crambe hispanica var. abyssinica is an oil seed crop. Wild plants related to crops (Crop Wild Relatives) are important resources for the genetic improvement of cultivated species. In order to reveal the genetic diversity of wild Crambe taxa of Turkey, we used ITS and trnL-F markers to create the haplotype networks and phylogeny reconstruction. Thirty-nine accessions belonging to 8 Crambe taxa were used as the material of our study: Crambe orientalis var. orientalis with 18 accessions, Crambe orientalis var. sulphurea with 3 accessions, …

Seed Morphology Of Some Taxa Of The Genus Euphorbia L. (Euphorbiaceae) In Turkey And Its Taxonomic Significance, Murat Kurşat, Bi̇rol Başer, Fahretti̇n Özbey, İrfan Emre

Turkish Journal of Botany

The morphological characteristics of seeds are not affected by environmental factors and can be used to identify the Euphorbia taxa. The present study aims to determine the morphological characteristics of seeds in 27 taxa of Euphorbia using scanning electron microscopy (SEM) and light microscope (LM). Findings revealed that the seeds of Euphorbia show variation in size, color, and seed surface ornamentations among different species. The seeds vary also in shape from ovoid, ellipsoidal, globose, quadrangular, compressed, to compressed-ellipsoidal with two exceptions in E. petiolata (oblong--quadrangular truncate), E. macrocarpa (subglobose), and E. szovitsii var. kharputensis(ellipsoidal quadrangular truncate). Furthermore, it was …

Optimizing Crispr/Cas9 Transfection Protocol To Generate A Tet-On Inducible Sk-Mel 24 Cell Lines To Better Study Icer, Abdulkader Hallak

Theses, Dissertations and Culminating Projects

Inducible cAMP Early Repressor (ICER) is a dominant transcription repressor of the cAMP Responsive Element Modulator (CREM) and cAMP Responsive Element Protein (CREB) family of transcription factors. ICER isoforms are differently expressed in various cell types and are involved in essential functions including hormonal regulation, circadian rhythm, spermatogenesis, and immune response. In the context of cancer, ICER is proposed as a tumor suppressor in leukemia, prostate, pituitary cancers, and melanoma. In melanoma, ICER is targeted for degradation during tumorigenesis and highly upregulated during regression, further highlighting its potency as a tumor suppressor. Inside the nucleus, ICER targets oncogenes and key …

Secondary Analysis Of Chip-Seq Dataset And Genomic Interactions Of Icer, Karem Rivera

Theses, Dissertations and Culminating Projects

The Inducible cyclic AMP (cAMP) Early Repressor (ICER) is an endogenous transcriptional repressor of the cAMP-mediated signaling gene transcription pathway and belongs to the CRE-binding protein (CREB)/CRE modulator (CREM) gene family. ICER is associated to many functions and biological processes in the immune system, brain, regulation of spermatogenesis, circadian control of transcription, apoptosis and metabolic functions, and of particular interest, has been shown to act like a tumor suppressor. Recent findings from our laboratory suggest that ICER might have a role in DNA repair, but further experiments need to be performed. In this research, we aimed to elucidate the function …

Prairie Strips: The Luze Farm, Tallgrass Prairie Center, University Of Northern Iowa

Tallgrass Prairie Publications and Reports

Report on the implementation of prairie plants in contour farming on a farm in Tama County, Iowa.

Statistical Analyses To Identify Genetic Variants Associated With Neuropathological And Mri-Based Endophenotypes Of Alzheimer’S Disease, Lincoln M. P. Shade

Theses and Dissertations--Epidemiology and Biostatistics

Aged individuals often accumulate multiple brain pathologies that contribute individually and synergistically to cognitive decline and dementia. Alzheimer’s disease (AD) is the most commonly diagnosed form of dementia, constituting over 50% of dementia diagnoses, and poses an enormous burden on human health and well-being. In the United States alone, over six million individuals are living with AD, and the disease imposes financial costs of treatment and care of over $300 billion annually. The most common form of AD, late-onset AD (LOAD), presents in individuals aged 65 years and older and is highly heritable, with twin and family studies estimating its …

Assessing The Relationship Between Binding Kinetics And Subcellular Protection Of Ribosomes By Single-Domain Antibodies, Mara Bureau

Legacy Theses & Dissertations (2009 - 2024)

Assessing the ability of VHHs to protect ribosomes from the depurination activity of Ricin toxin’s(RT) enzymatic subunit, RTA, can provide insights regarding binding placement, epitopes of interest and role of affinity in neutralization is critical for the development of anti-toxin countermeasures. Determining the level of correlation between binding strength, binding location and elicited protection can be useful for future and ongoing research. Ricin is easily manufactured and considered one of the most toxic biological agents known. Without an approved vaccine, continued research to design and optimize therapeutic countermeasures is essential. Over the past decade single-domain antibodies (VHHs) have been recognized …

Hibernation Behavior And Winter Feeding Of Northern Myotis In Coastal Populations After White-Nose Syndrome Invasion, Casey Jo Pendergast

Legacy Theses & Dissertations (2009 - 2024)

The northern myotis (Myotis septentrionalis) is a bat species suffering massive population declines due to the effects of white nose syndrome, a severe and pervasive disease threatening extinction across the species range. A remnant population of northern myotis capable of persisting despite infection with the disease has been identified across three coastal islands: Long Island, NY; Martha’s Vineyard, MA; and Nantucket, MA. This study looked to uncover the mechanisms for survival by characterizing activity of northern myotis and potential prey species throughout the hibernation season. Bat activity was monitored during the 2017/18, 2018/19, and 2019/20 winter seasons at known foraging …

Lead And Cadmium Exposure Alters Respiration And Shell Bioadhesive Matrix In A Single-Chambered, Agglutinated Foraminiferan Protist: Implications For Marine Biomonitoring, Amanda L. Andreas

Legacy Theses & Dissertations (2009 - 2024)

Heavy metal exposure from anthropogenic pollutants negatively affects many marine organisms, including foraminiferan protists. Foraminifera are often used as bioindicators in benthic environments due to their sensitivity to environmental stress. Primary research has commonly focused on how heavy metals affect foraminiferal assemblages, distribution, ultrastructure, and shell morphology. Multi-chambered calcareous and agglutinated forams are the primary focus of such ecotoxicological studies; however, less is known about how heavy metals affect the physiology and shell microarchitecture of monothalamid agglutinated species. The research reported here represents an interdisciplinary environmental toxicology approach to study the exposure effects of heavy metal toxicants, lead (Pb) and …

Olfaction And Puberty : The Study Of The Development And Migration Of The Gnrh-1ns And Their Migratory Partners The Olfactory Unsheathing Cells, Ed Zandro Moina Taroc

Legacy Theses & Dissertations (2009 - 2024)

Sexual development and puberty are two key developmental processes that are crucial for the propagation and evolution of species. The hormone Gonadotropin releasing hormone-1 (GnRH-1) is a key hormone in regulating both processes by controlling the hormonal Hypothalamic-Pituitary-Gonadal axis in the release of sex hormones (Testosterone, Estrogen, Progesterone) at the correct developmental time points initiate puberty and progress sexual development. A subset of hypothalamic neurons known as the GnRH-1 neurons (GnRH-1ns) release GnRH-1 in a pulsatile fashion during embryonic and post-natal development to specifically regulate these processes. The GnRH-1ns are an interesting group of neurons because they are formed in …