Life Sciences Commons^™

Effects Of Cyanobacteria Harmful Algal Blooms On The Microbial Community Within Lake Okeechobee, Fl, Usa, Paisley S. Samuel

All HCAS Student Capstones, Theses, and Dissertations

The Lake Okeechobee (Lake O) watershed is a Floridian freshwater ecosystem that has been affected by the increased frequency and intensity of harmful cyanobacterial bloom (cyanoHAB) events occurring over recent decades. Lake O has several ecological and economic purposes such as providing habitats for various organisms and providing drinking water to urban communities surrounding the lake. Toxic cyanoHAB events are posing a threat to the ecosystem and economy of the lake due to the degradation of water quality. This study investigates how the microbial community structure within Lake O is affected by annual cyanobacterial harmful algal blooms over several years …

Impacts Of Irrigation Technology, Irrigation Rate, And Drought-Tolerant Genetics On Silage Corn Production, Tina Sullivan, Matt Yost, Dakota Boren, Earl Creech, Boyd Kitchen, Randall Violett, Burdette Barker

Plants, Soils and Climate Student Research

Many studies have examined individual water-saving management practices for corn (Zea mays L.), but few studies have looked at how combinations of practices might further enhance water optimization. The research objectives of this paper were to evaluate the impact of irrigation technology, irrigation rate, and crop genetics, as well as their interactions, on silage corn yield and forage quality. Trials were conducted in three Utah locations from 2019 through 2021. The results from five site-years indicated that the best water optimization practices varied by site-year. Low-elevation sprinklers commonly applied water more efficiently, with four of the five site-years having …

Does Oxybenzone Affect The Development Of Sea Urchins Up To The Gastrula Stage, And What Do We Do About It?, Claire Crozier

Honors Projects

Understanding the effects of anthropogenic factors, such as oxybenzone, on sea urchins is extremely important to protect the growth of coral reefs- the ocean’s hotspot for biodiversity. Spawning of sea urchins, Lytechinus variegatus, was induced and eggs were fertilized in different concentrations of oxybenzone contaminated water. 48 hours later, data was collected underneath a light microscope. Observations of the data indicate that oxybenzone negatively affects sea urchin development up until the gastrula stage. Using both my data and knowledge from standing literature, I decided to write a policy analysis paper to answer the question “what should we do regarding sunscreen …

Evaluation Of Novel Beverage Formulations For Hydration Enhancement In Humans, Grant M. Tinsley, Madelin R. Siedler, Christian Rodriguez, Patrick Harty, Matthew T. Stratton, Sarah J. White, Dale S. Keith, Jacob J. Green, Jake R. Boykin, Abegale D. Williams, Brielle Dehaven, Alexandra Brojanac, Ethan Tinoco

Faculty Scholarship

This study evaluated the influence of novel beverage formulations on bioimpedance- and urine-based hydration markers. Thirty young healthy adults (n=16 females, n=14 males; age: 23.2±3.7 years; BMI: 24.3±3.3 kg/m2 ) participated in a randomized, double-blind, placebo-controlled, crossover study. Participants completed three conditions with baseline bioimpedance, urine, and body mass assessments, followed by ingestion of one liter of a test beverage over a 30-minute period. The three beverages were: active hydration formulation in still (AFstill) or sparkling (AFspark) water and a still water control. The active formulations were identical in concentrations of alpha-cyclodextrin and complexing agents. Following beverage ingestion, bioimpedance assessments …

Dataset Of Rna-Seq Transcriptome Of The Fetal Liver At Day 83 Of Gestation Associated With Periconceptual Maternal Nutrition In Beef Heifers, Wellison J.S. Diniz, Alison K. Ward, Kacie L. Mccathy, Cierrah J. Kassetas, Friederike Baumgaertner, Lawrence P. Reynolds, Pawel P. Borowicz, Kevin K. Sedivec, James D. Kirsch, Sheri T. Dorsam, Tammi L. Neville, J. Chris Forcherio, Ronald Scott, Joel S. Caton, Carl R. Dahlen

Department of Animal Science: Faculty Publications

Herein, we present a dataset based on the RNA-Seq analysis of liver tissue from bovine female fetuses at day 83 of gestation. The findings were reported in the main article, “Periconceptual maternal nutrition affects fetal liver programming of energy- and lipid-related genes”[1] . These data were generated to investigate the effects of periconceptual maternal vitamin and mineral supplementation and rates of body weight gain on the transcript abundance of genes associated with fetal hepatic metabolism and function. To this end, crossbred Angus beef heifers ( n = 35) were randomly assigned to 1 of 4 treatments in a 2 × …

Epigenetics In Forensic Science, Reagan Faunce

Honors Projects

DNA methylation can be useful for forensic scientists because it can be used to differentiate between the DNA of identical twins, determine the age of a contributor of a DNA sample, and help us understand the actions and tendencies of violent criminals. Research shows that DNA methylation changes over time and can be caused by traumatic events, suggesting that methylation increases with age. Prior studies of DNA methylation at the promoters of the EDARADD, TOM1L1, and NPTX2 genes have been able to predict age within 5.2 years and a study of the ASPA, EDARADD, PDE4C, and ELOVL2 genes predicted age …

Plant Sentience: "Feeling" Or Biological Automatism?, Andrea Mastinu

Animal Sentience

Sentience refers to the ability of an organism to have subjective experiences such as sensations, emotions and awareness. Whereas some animals, including humans, are widely recognized as sentient, the question of whether plants are sentient is still debated among scientists, philosophers, and ethicists. Over the past 20 years, many scientists such as Trewavas, Baluška, Mancuso, Gagliano, and Calvo have reported interesting discussions about memory, behavior, communication, and intelligence in plants. However, the reported conclusions have not convinced the entire scientific community. In this commentary, I would like to focus on two critical aspects related to sentience: cognition and emotion

Plant Sentience: A Hypothesis Based On Shaky Premises, Carel Ten Cate

Animal Sentience

Plants may produce fascinating behavioural phenomena for which the label ‘cognitive process’ may be applicable, at least by some definitions. Segundo-Ortin & Calvo (2023) base their hypothesis that plants might be sentient on the premise of demonstrated presence of cognitive complexity. However, the way phenomena are ascribed, and how the term ‘cognitive’ is used by Segundo-Ortin & Calvo, deviates from the common practice in studies of animal cognition, implying greater complexity than seems justified. It thus provides a questionable basis for attributing sentience to plants.

Functional Domains Of The Hsv-1 Ul37 Protein In Virus Infectivity And Retrograde Transport In Neurons, Carolyn Clark

LSU Doctoral Dissertations

Herpes simplex virus type 1 is large alphaherpesvirus with 20 envelope proteins and 23 tegument proteins. Virus entry is via fusion of the viral envelope with cellular membranes mediated by a complex of viral glycoproteins. Glycoprotein B (gB) is the only fusogenic glycoprotein, while other viral glycoproteins and membrane proteins including gD, gH, gL, gK and UL20 membrane protein modulate gB’s fusogenicity. Previously, Our laboratory developed the HSV-1 (VC2) vaccines strain with partial deletions in the amino termini of gK (ΔgK(31–68)) and the UL20 membrane protein (ΔUL20(4–22)). VC2 enters epithelial cells only via endocytosis followed by release of the capsid …

Increased Breast And Colorectal Cancer Risk In Type 2 Diabetes: Awareness Among Adults With And Without Diabetes And Information Provision On Diabetes Websites, Laura Ashley, Kathryn A Robb, Daryl B O'Connor, Rebecca Platt, Mollie Price, Olivia Robinson, Elizabeth Travis, Lorraine Lipscombe, Ramzi Ajjan, Rebecca Birch

Faculty, Staff and Student Publications

BACKGROUND: People with type 2 diabetes mellitus (T2DM) have a higher risk of developing breast and bowel cancers but are less likely to participate in cancer screening.

PURPOSE: Two interlinked studies examined public awareness of the fact that T2DM increases breast and bowel cancer risk, and provision of this information on diabetes websites.

METHODS: Study-1: phase-1 surveyed awareness of T2DM-increased cancer risk in a nationally-representative British sample aged 50-74 (N = 1,458) and compared respondents with and without T2DM (n = 125 vs. n = 1,305); phase-2 surveyed an additional exclusively T2DM sample (N = 319). Study-2: High-ranking diabetes websites …

High-Risk Wildlife Strike Regions: An In-Depth Visual Representation Of Wildlife Strikes At And Around Part 139 Airports In Florida., Luke P. Ochs, Flavio A. C. Mendonca Ph.D.

Beyond: Undergraduate Research Journal

Wildlife strikes with aircraft have been and continue to be a problem in the aviation industry costing millions of dollars in both damage and delays. This study used the geoprocessing information system ArcGIS to depict wildlife strikes at Florida’s 26 Part 139 Airports from 2012 to 2021. Importing reports from the National Wildlife Strike Database into ArcGIS, this study used symbology and geoprocessing tools to create a color/ size gradient that depicts the risk (number of damaging strikes out of known strikes) at each airport. Using an interactive map with ArcGIS Online viewers can observe then select each airports vector …

Soil Microbial Community Composition Of White Oak Mountain, Tennessee, Matthew Gano, Timothy D. Trott

Research in Biology

Abstract - Soil microbial communities are responsible for nutrient cycling in terrestrial ecosystems and have symbiotic and parasitic relationships with the plant community. However, little is known about the factors that determine the soil microbial community composition. In this study we examined how spring wildflower diversity and geographical factors influence the soil microbial community composition of the second growth oak hickory forests of White Oak Mountain in Southeast Tennessee. The characterization of the soil microbial community was completed with 16S/18S/ITS rDNA amplicon sequencing of total DNA extracted from soil samples that were normalized for each sample plot. Here we characterize …

Examining The Different Soil Horizons Of White Oak Mountain, Tn And Their Effect On The Soil Microbial Community, Ji Won Moon, Timothy D. Trott

Research in Biology

Soil microorganisms participate in the diverse interaction within virtually all ecosystems, consequently affecting the associated human and animal population. Identifying how edaphic variables alter the functional and taxonomic diversity of the soil microbial community requires an examination of total microbial soil diversity and abundance. This research study examined the effect of soil depth and horizon on the soil microbial community composition of White Oak Mountain. The soil microbial community was characterized by 16S/18S/ITS rDNA amplicon sequencing of the DNA extract of six samples from the three major soil types identified: HcE, MoE, and uMvC. OTU clustering analysis and both alpha …

Smokejumper Obituary: Evans, Randall Ova "Randy" (Mccall 1977), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

The Santa Clara, 2023-04-21, Santa Clara University

The Santa Clara

No abstract provided.

Literature Replication: Insect Gut Cell Isolation Protocols, Sophie Pickelner

Honors Theses

A large problem in science is the lack of literature replication, especially for subjects in which there is little published research. Literature replication is an integral part of the scientific method and is important for validating methods and results of published studies. A study from Nature found that out of 1,500 scientists interviewed, over 70% have been unable to reproduce literature studies and over half of them have been unable to reproduce even their own studies (Baker, 2016). This problem is even more pronounced in the field of biology, with 80% of scientists reporting that they are unable to replicate …

Meditation And Action Observation Effect On Putting Performance, Austin Tyler Webb, Tanner Burris, Trafton Houck

Senior Seminar Papers

The understanding of meditation and action observations effect on performance can be extremely beneficial for sporting success. A new method of preparation could be the deciding factor of the next national champion, Master’s winner, or NFL dynasty. Psychological factors have not been thoroughly studied, and any science in this field is still new. Because of the infancy of this field, there are a lot of unknowns about the effectiveness of a physiological routine on performance.

Developmental Exposure To Corn Grown On Lake Erie Dredged Material: A Preliminary Analysis, Kaylyn A. S. Flanigan, Madelyn I. Czuba, Victoria R. Riesgo, Megan A. Rúa, Louise M. Stevenson, Jari Willing

Biological Sciences Faculty Publications

While corn is considered to be a healthy food option, common agricultural practices, such as the application of soil amendments, might be introducing contaminants of concern (COC) into corn plants. The use of dredged material, which contain contaminants such as heavy metals, polychlorinated biphenyls (PCBs) and polycyclic aromatic hydrocarbons (PAHs), as a soil amendment is increasing. Contaminants from these amendments can accumulate in corn kernels harvested from plants grown on these sediments and potentially biomagnify in organisms that consume them. The extent to which secondary exposure to such contaminants in corn affect the mammalian central nervous system has been virtually …

Promoting Engagement Through Socioscientific Inquiry At The Middle School Level, Kaitlyn Kalehuawehe

Undergraduate Theses

Learning science is not just about facts. It is an area that has the potential to expand beyond the classroom. There is a concern for students having negative associations with science, and not seeing the relevance it plays within their lives. The curriculum should reflect science's value within society and its influence on complex issues. Learning science in the context of socioscientific issues (SSI) can promote an understanding that connects science to society and everyday life. The main objective of this thesis is the see how the use of SSI in the middle school classroom can promote student engagement and …

The Bellarmine Bee Bed: Organizing A Native Plant Garden Using Feedback From The Local Community, Kate Moran

Undergraduate Theses

Animal pollinators are the cornerstone of healthy ecosystems. Their survival is essential for the persistence of entire food chains: from the flowers they cross-pollinate directly, to the animals who depend on those plants for nutrition. The establishment of pollinator gardens—particularly ones that consist of native plants—is an effective way to enhance their biodiversity, abundance, and well-being.

The main goal of this thesis is to construct a pollinator garden that maximizes the benefits for animal pollinators using feedback from local gardeners. A survey was used to gather information about the popularity and preferences of 40 flowering plants, and after analyzing the …

A Potential Role Of Gsk-3beta In The Development Of Pain Post-Spinal Cord Injury, Emily Ernst

Undergraduate Theses

Chronic neuropathic pain is a very common consequence following spinal cord injury (SCI) and poses significant clinical challenge. Current treatments are largely ineffective and as a result, patients are often left with debilitating pain at and below the level of the spinal cord injury. After spinal injury, a cascade of events occurs within the nervous system. One important aspect of this cascade for investigation is the anatomical changes that occur post-SCI. There is evidence of maladaptive sprouting/growth in sensory nerve fibers that is thought to play a role in the development and amplification of pain signals. Sprouting of primary afferents …

Migration Of Elk (Cervus Canadensis) And Barriers To Movement, Levi Watkins

Theses and Dissertations

Movement patterns of animals are varied, complex, and can be influenced by environmental and anthropogenic factors. One form of animal movement, migration, is influenced by environmental factors that alter the timing, duration, intensity, and likelihood of migration. Additionally, features of the landscape, both natural and anthropogenic, can alter how animals move through their seasonal and home ranges. Movement patterns can be impeded or prevented by features such as railroads, rivers, and roads. Here we explore characteristics of elk (Cervus canadensis) migration by evaluating the strategies of migration exhibited and the factors that influence migration of elk in central and eastern …

Overcoming Barriers To Native Species Restoration Using Gibberellic Acid And Fungicide Seed Coatings, Amber Jo Johnson

Theses and Dissertations

Many barriers can limit restoration success. In the first chapter of this thesis, the barrier of strong seed dormancy is addressed. While dormancy benefits the species' long-term survival, it can present a challenge within a restoration scenario where rapid establishment is required. Soaking seeds in gibberellic acid (GA3) can overcome dormancy. An easier and potentially more effective method to apply this hormone is to coat seeds with a GA3-impregnated polymer, which provides a slow release of the hormone. Seed dormancy can also be mitigated by creating a favorable microsite with increased soil moisture. We compared the emergence and establishment of …

Fuel Your Fitness, Payton Carpenter

Senior Seminar Papers

Caffeinated beverages are incredibly popular for improving mental acuity and exercise performance, and their ergogenic effects have been thoroughly studied. For our research project, we wanted to study the effects of caffeine, specifically caffeinated energy drinks, on muscular endurance. There are hundreds of energy drinks on the market with varying ingredients in addition to caffeine that claim to have substantial physiological benefits, so when choosing energy drinks for the study, we chose Alani Nu and Celsius because of the similarities in marketing strategies, ingredients, and serving size. We asked this questions: is there a significant difference in muscular endurance when …

Volatile Organic Compound Identification Using Metal Oxide Sensors And Machine Learning, Hunter Tiner

Theses and Dissertations

Volatile Organic Compounds (VOCs) are emitted gases that include many chemicals that can be created by biological processes or the byproduct of industrial processes, and can be present in a variety of pollutants. VOCs can cause a variety of ailments in humans and animals, and are expressed in plants as a way of signaling damage or the presence of pests. In this Thesis, an Internet of Things (IOT) E-nose device is outfitted with a gas array of eight Metal Oxide Semiconductor (MOS) type gas sensors, which are sensitive to a broad range of VOCs, yet lack selectivity and are unable …

Anti-Microbial Peptide Screen For Crop Protection, Sydney Chen

Honors Theses

Vestaron currently uses an established and reliable peptide discovery and development research platform, particularly for the development of insecticidal peptides. The platform centers around a proprietary yeast expression system for peptide production (“Vestaron’s yeast expression system"). Vestaron aims to expand their portfolio and provide clean solutions in crop protection using peptide technologies to protect plants not only from insect pests but also microbial pests including phytopathogenic fungi and bacteria. Antimicrobial peptides (AMPs) have been studied extensively. However, it is questionable whether Vestaron’s yeast expression system can express AMPs heterologously. In this study, thirteen promising antimicrobial peptides were selected from literature …

Long Term Monitoring Of Grand Ravines Park Restoration: An Authentic Research Opportunity For Jenison High School Students And Beyond, Karina C. White

Masters Projects

Access to authentic research is limited at the 7-12 science education level. At the same time, many local restoration projects would benefit from, but don’t have access to a long-term system of monitoring. This project seeks to unite those two needs by developing a protocol for 7-12 classrooms to be able to participate in authentic research through long-term monitoring of a local restoration project. The protocol developed in this project was used by Jenison High School students at Grand Ravines Park. Grand Ravines Park is a recently acquired Ottawa County park with a history of anthropogenic disturbances. Shortly after the …

Characterizing Movement Patterns Of Nomadic Pastoralists And Their Exposure To Rift Valley Fever In Kenya, G. Mosomtai, J. L. Kasiiti, R. M. Murithi, P. Sandström, T. Landmann, O. W. Lwande, O. A. Hassan, C. Ahlm, R. Sang, M. Evander, Z. Szantoi, G. Ottavianelli

All Peer-Reviewed Publications

The role of animal movement in spreading infectious diseases is highly recognized by various legislations and institutions such as the World Organisation for Animal Health and the International Animal Health Code. The increased interactions at the nexus of human-animal-ecosystem interface have seen an unprecedented introduction and reintroduction of new zoonotic diseases with high socio-economic impacts such as the COVID-19 pandemic. Rift Valley fever (RVF) is a zoonotic disease that affects both humans and animals and is transmitted by Aedes mosquitoes or through contact with the body fluids of infected animals. This study seeks to characterize movement patterns of pastoralist and …

Comparative Study Of Adenosine Analogs As Inhibitors Of Protein Arginine Methyltransferases And A Clostridioides Difficile- Specific Dna Adenine Methyltransferase, Jujun Zhou, Youchao Deng, Iredia D Iyamu, John R Horton, Dan Yu, Taraneh Hajian, Masoud Vedadi, Dante Rotili, Antonello Mai, Robert M Blumenthal, Xing Zhang, Rong Huang, Xiaodong Cheng

Faculty, Staff and Student Publications

S-Adenosyl-l-methionine (SAM) analogs are adaptable tools for studying and therapeutically inhibiting SAM-dependent methyltransferases (MTases). Some MTases play significant roles in host–pathogen interactions, one of which is Clostridioides difficile-specific DNA adenine MTase (CamA). CamA is needed for efficient sporulation and alters persistence in the colon. To discover potent and selective CamA inhibitors, we explored modifications of the solvent-exposed edge of the SAM adenosine moiety. Starting from the two parental compounds (6e and 7), we designed an adenosine analog (11a) carrying a 3-phenylpropyl moiety at the adenine N6-amino group, and a 3-(cyclohexylmethyl guanidine)-ethyl moiety at the …

Cross-Dataset Single-Cell Analysis Identifies Temporal Alterations In Cell Populations Of Primary Pancreatic Tumor And Liver Metastasis, Daowei Yang, Rohan Moniruzzaman, Hua Wang, Huamin Wang, Yang Chen

Faculty, Staff and Student Publications

Pancreatic ductal adenocarcinoma (PDAC) has a unique tumor microenvironment composed of various cell populations such as cancer cells, cancer-associated fibroblasts (CAFs), immune cells, and endothelial cells. Recently, single-cell RNA-sequencing analysis (scRNA-seq) has systemically revealed the genomic profiles of these cell populations in PDAC. However, the direct comparison of cell population composition and genomic profile between primary tumors (at both early- and late-stage) and metastatic tumors of PDAC is still lacking. In this study, we combined and analyzed recent scRNA-seq datasets of transgenic KPC mouse models with autochthonous PDAC and matched liver metastasis, revealing the unique tumor ecosystem and cell composition …